Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06960

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06959 and MPMX19_06960 are separated by 48 nucleotidesMPMX19_06960 and MPMX19_06961 are separated by 45 nucleotides MPMX19_06959: MPMX19_06959 - hypothetical protein, at 235,096 to 236,325 _06959 MPMX19_06960: MPMX19_06960 - Urocanate reductase, at 236,374 to 237,855 _06960 MPMX19_06961: MPMX19_06961 - Acetyl-CoA:oxalate CoA-transferase, at 237,901 to 239,151 _06961 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1at 235.382 kb on + strand, within MPMX19_06959at 235.383 kb on - strand, within MPMX19_06959at 235.383 kb on - strand, within MPMX19_06959at 235.397 kb on + strand, within MPMX19_06959at 235.397 kb on + strand, within MPMX19_06959at 235.398 kb on - strand, within MPMX19_06959at 235.472 kb on + strand, within MPMX19_06959at 235.472 kb on + strand, within MPMX19_06959at 235.472 kb on + strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.473 kb on - strand, within MPMX19_06959at 235.787 kb on + strand, within MPMX19_06959at 235.788 kb on - strand, within MPMX19_06959at 235.788 kb on - strand, within MPMX19_06959at 235.788 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.806 kb on - strand, within MPMX19_06959at 235.862 kb on + strand, within MPMX19_06959at 235.862 kb on + strand, within MPMX19_06959at 235.862 kb on + strand, within MPMX19_06959at 235.863 kb on - strand, within MPMX19_06959at 235.863 kb on - strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.871 kb on + strand, within MPMX19_06959at 235.872 kb on - strand, within MPMX19_06959at 235.872 kb on - strand, within MPMX19_06959at 236.036 kb on + strand, within MPMX19_06959at 236.036 kb on + strand, within MPMX19_06959at 236.037 kb on - strand, within MPMX19_06959at 236.237 kb on + strandat 236.237 kb on + strandat 236.338 kb on - strandat 236.343 kb on + strandat 236.344 kb on - strandat 236.365 kb on + strandat 236.365 kb on + strandat 236.365 kb on + strandat 236.366 kb on - strandat 236.366 kb on - strandat 236.366 kb on - strandat 236.366 kb on - strandat 236.366 kb on - strandat 236.458 kb on - strandat 236.459 kb on + strandat 236.459 kb on + strandat 236.459 kb on + strandat 236.459 kb on + strandat 236.459 kb on + strandat 236.460 kb on - strandat 236.460 kb on - strandat 236.460 kb on - strandat 236.460 kb on - strandat 236.460 kb on - strandat 236.460 kb on - strandat 236.471 kb on + strandat 236.498 kb on + strandat 236.498 kb on + strandat 236.499 kb on - strandat 236.726 kb on + strand, within MPMX19_06960at 236.727 kb on - strand, within MPMX19_06960at 236.727 kb on - strand, within MPMX19_06960at 236.876 kb on + strand, within MPMX19_06960at 236.876 kb on + strand, within MPMX19_06960at 236.876 kb on + strand, within MPMX19_06960at 236.876 kb on + strand, within MPMX19_06960at 236.876 kb on + strand, within MPMX19_06960at 236.876 kb on + strand, within MPMX19_06960at 236.877 kb on - strand, within MPMX19_06960at 236.877 kb on - strand, within MPMX19_06960at 236.877 kb on - strand, within MPMX19_06960at 236.877 kb on - strand, within MPMX19_06960at 236.877 kb on - strand, within MPMX19_06960at 236.877 kb on - strand, within MPMX19_06960at 236.877 kb on - strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.924 kb on + strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.925 kb on - strand, within MPMX19_06960at 236.994 kb on - strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.056 kb on + strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.057 kb on - strand, within MPMX19_06960at 237.125 kb on + strand, within MPMX19_06960at 237.125 kb on + strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.126 kb on - strand, within MPMX19_06960at 237.129 kb on - strand, within MPMX19_06960at 237.176 kb on + strand, within MPMX19_06960at 237.176 kb on + strand, within MPMX19_06960at 237.176 kb on + strand, within MPMX19_06960at 237.177 kb on - strand, within MPMX19_06960at 237.177 kb on - strand, within MPMX19_06960at 237.177 kb on - strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.437 kb on + strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.438 kb on - strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.554 kb on + strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.555 kb on - strand, within MPMX19_06960at 237.572 kb on + strand, within MPMX19_06960at 237.572 kb on + strand, within MPMX19_06960at 237.572 kb on + strand, within MPMX19_06960at 237.573 kb on - strand, within MPMX19_06960at 237.573 kb on - strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.681 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.683 kb on + strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 237.684 kb on - strand, within MPMX19_06960at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.433 kb on + strand, within MPMX19_06961at 238.434 kb on - strand, within MPMX19_06961at 238.497 kb on - strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.682 kb on + strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.683 kb on - strand, within MPMX19_06961at 238.736 kb on + strand, within MPMX19_06961at 238.769 kb on + strand, within MPMX19_06961at 238.769 kb on + strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961at 238.770 kb on - strand, within MPMX19_06961

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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235,382 + MPMX19_06959 0.23 -0.3
235,383 - MPMX19_06959 0.23 -0.2
235,383 - MPMX19_06959 0.23 +0.1
235,397 + MPMX19_06959 0.24 -2.3
235,397 + MPMX19_06959 0.24 -1.3
235,398 - MPMX19_06959 0.25 -0.3
235,472 + MPMX19_06959 0.31 +1.1
235,472 + MPMX19_06959 0.31 +0.7
235,472 + MPMX19_06959 0.31 -0.7
235,473 - MPMX19_06959 0.31 +0.2
235,473 - MPMX19_06959 0.31 -0.8
235,473 - MPMX19_06959 0.31 -1.7
235,473 - MPMX19_06959 0.31 -0.3
235,787 + MPMX19_06959 0.56 -0.2
235,788 - MPMX19_06959 0.56 -0.7
235,788 - MPMX19_06959 0.56 +0.3
235,788 - MPMX19_06959 0.56 -0.4
235,806 - MPMX19_06959 0.58 -0.8
235,806 - MPMX19_06959 0.58 +1.4
235,806 - MPMX19_06959 0.58 +0.1
235,806 - MPMX19_06959 0.58 -0.6
235,806 - MPMX19_06959 0.58 -0.5
235,862 + MPMX19_06959 0.62 -1.4
235,862 + MPMX19_06959 0.62 -0.7
235,862 + MPMX19_06959 0.62 +1.0
235,863 - MPMX19_06959 0.62 +0.5
235,863 - MPMX19_06959 0.62 -0.3
235,871 + MPMX19_06959 0.63 +0.1
235,871 + MPMX19_06959 0.63 -1.7
235,871 + MPMX19_06959 0.63 -0.4
235,871 + MPMX19_06959 0.63 +0.2
235,871 + MPMX19_06959 0.63 -0.7
235,872 - MPMX19_06959 0.63 -0.7
235,872 - MPMX19_06959 0.63 -1.8
236,036 + MPMX19_06959 0.76 +1.7
236,036 + MPMX19_06959 0.76 +0.2
236,037 - MPMX19_06959 0.77 -1.3
236,237 + -1.8
236,237 + +1.0
236,338 - -0.4
236,343 + -0.8
236,344 - +0.1
236,365 + -0.0
236,365 + -1.5
236,365 + +1.2
236,366 - +1.1
236,366 - -1.4
236,366 - -0.4
236,366 - +0.5
236,366 - -1.1
236,458 - -0.1
236,459 + -2.0
236,459 + +1.2
236,459 + +1.0
236,459 + +0.3
236,459 + -0.0
236,460 - +0.9
236,460 - -0.7
236,460 - -0.5
236,460 - +1.0
236,460 - -1.2
236,460 - +1.0
236,471 + +1.7
236,498 + -0.8
236,498 + -0.6
236,499 - -1.3
236,726 + MPMX19_06960 0.24 +1.1
236,727 - MPMX19_06960 0.24 -0.6
236,727 - MPMX19_06960 0.24 +1.3
236,876 + MPMX19_06960 0.34 -0.5
236,876 + MPMX19_06960 0.34 -0.3
236,876 + MPMX19_06960 0.34 +0.7
236,876 + MPMX19_06960 0.34 -0.3
236,876 + MPMX19_06960 0.34 +0.7
236,876 + MPMX19_06960 0.34 +0.8
236,877 - MPMX19_06960 0.34 -0.7
236,877 - MPMX19_06960 0.34 -0.5
236,877 - MPMX19_06960 0.34 +0.9
236,877 - MPMX19_06960 0.34 -1.2
236,877 - MPMX19_06960 0.34 -1.7
236,877 - MPMX19_06960 0.34 -0.1
236,877 - MPMX19_06960 0.34 -0.6
236,924 + MPMX19_06960 0.37 +0.3
236,924 + MPMX19_06960 0.37 -0.5
236,924 + MPMX19_06960 0.37 -0.0
236,924 + MPMX19_06960 0.37 -1.0
236,924 + MPMX19_06960 0.37 +1.6
236,924 + MPMX19_06960 0.37 -0.4
236,924 + MPMX19_06960 0.37 -0.3
236,925 - MPMX19_06960 0.37 +0.8
236,925 - MPMX19_06960 0.37 -1.4
236,925 - MPMX19_06960 0.37 +0.3
236,925 - MPMX19_06960 0.37 -1.0
236,925 - MPMX19_06960 0.37 +0.6
236,925 - MPMX19_06960 0.37 +1.1
236,925 - MPMX19_06960 0.37 -1.5
236,925 - MPMX19_06960 0.37 +0.1
236,925 - MPMX19_06960 0.37 +0.3
236,925 - MPMX19_06960 0.37 -1.9
236,925 - MPMX19_06960 0.37 -0.9
236,925 - MPMX19_06960 0.37 +0.5
236,994 - MPMX19_06960 0.42 -0.2
237,056 + MPMX19_06960 0.46 -0.2
237,056 + MPMX19_06960 0.46 -1.8
237,056 + MPMX19_06960 0.46 -2.2
237,056 + MPMX19_06960 0.46 +0.7
237,056 + MPMX19_06960 0.46 +0.2
237,056 + MPMX19_06960 0.46 -1.2
237,056 + MPMX19_06960 0.46 -0.6
237,056 + MPMX19_06960 0.46 -1.1
237,056 + MPMX19_06960 0.46 -2.6
237,056 + MPMX19_06960 0.46 +0.1
237,056 + MPMX19_06960 0.46 -0.9
237,056 + MPMX19_06960 0.46 +0.1
237,057 - MPMX19_06960 0.46 +1.1
237,057 - MPMX19_06960 0.46 +0.3
237,057 - MPMX19_06960 0.46 -1.1
237,057 - MPMX19_06960 0.46 -1.9
237,057 - MPMX19_06960 0.46 +0.3
237,057 - MPMX19_06960 0.46 +1.2
237,057 - MPMX19_06960 0.46 -0.7
237,057 - MPMX19_06960 0.46 -1.3
237,057 - MPMX19_06960 0.46 +0.7
237,057 - MPMX19_06960 0.46 +0.2
237,125 + MPMX19_06960 0.51 -0.6
237,125 + MPMX19_06960 0.51 -0.2
237,126 - MPMX19_06960 0.51 -0.8
237,126 - MPMX19_06960 0.51 -0.4
237,126 - MPMX19_06960 0.51 -0.6
237,126 - MPMX19_06960 0.51 -0.2
237,126 - MPMX19_06960 0.51 -0.5
237,126 - MPMX19_06960 0.51 -1.8
237,126 - MPMX19_06960 0.51 +0.8
237,126 - MPMX19_06960 0.51 +0.1
237,126 - MPMX19_06960 0.51 -0.7
237,126 - MPMX19_06960 0.51 -0.4
237,129 - MPMX19_06960 0.51 -0.5
237,176 + MPMX19_06960 0.54 -0.8
237,176 + MPMX19_06960 0.54 -1.7
237,176 + MPMX19_06960 0.54 -1.5
237,177 - MPMX19_06960 0.54 -1.3
237,177 - MPMX19_06960 0.54 +1.7
237,177 - MPMX19_06960 0.54 +1.3
237,437 + MPMX19_06960 0.72 -0.2
237,437 + MPMX19_06960 0.72 -0.2
237,437 + MPMX19_06960 0.72 +0.2
237,437 + MPMX19_06960 0.72 +0.5
237,437 + MPMX19_06960 0.72 +0.3
237,437 + MPMX19_06960 0.72 -0.9
237,438 - MPMX19_06960 0.72 -2.0
237,438 - MPMX19_06960 0.72 -0.1
237,438 - MPMX19_06960 0.72 -2.3
237,438 - MPMX19_06960 0.72 -0.3
237,438 - MPMX19_06960 0.72 -0.5
237,438 - MPMX19_06960 0.72 +0.4
237,554 + MPMX19_06960 0.80 -0.9
237,554 + MPMX19_06960 0.80 -1.1
237,554 + MPMX19_06960 0.80 -0.8
237,554 + MPMX19_06960 0.80 -0.6
237,555 - MPMX19_06960 0.80 +1.4
237,555 - MPMX19_06960 0.80 -0.8
237,555 - MPMX19_06960 0.80 -0.3
237,555 - MPMX19_06960 0.80 -1.0
237,555 - MPMX19_06960 0.80 +0.7
237,555 - MPMX19_06960 0.80 +0.2
237,555 - MPMX19_06960 0.80 +0.1
237,572 + MPMX19_06960 0.81 -1.9
237,572 + MPMX19_06960 0.81 +0.1
237,572 + MPMX19_06960 0.81 -0.3
237,573 - MPMX19_06960 0.81 -0.1
237,573 - MPMX19_06960 0.81 -1.0
237,681 + MPMX19_06960 0.88 -0.5
237,681 + MPMX19_06960 0.88 +1.7
237,681 + MPMX19_06960 0.88 +0.5
237,681 + MPMX19_06960 0.88 -0.5
237,683 + MPMX19_06960 0.88 -1.7
237,683 + MPMX19_06960 0.88 -0.7
237,683 + MPMX19_06960 0.88 +0.7
237,683 + MPMX19_06960 0.88 +0.3
237,683 + MPMX19_06960 0.88 +0.3
237,683 + MPMX19_06960 0.88 +0.8
237,684 - MPMX19_06960 0.88 +1.1
237,684 - MPMX19_06960 0.88 -1.2
237,684 - MPMX19_06960 0.88 -1.1
237,684 - MPMX19_06960 0.88 -0.6
237,684 - MPMX19_06960 0.88 +1.3
237,684 - MPMX19_06960 0.88 +0.7
237,684 - MPMX19_06960 0.88 -0.3
237,684 - MPMX19_06960 0.88 +0.7
237,684 - MPMX19_06960 0.88 -0.0
237,684 - MPMX19_06960 0.88 -0.1
237,684 - MPMX19_06960 0.88 -1.7
237,684 - MPMX19_06960 0.88 +0.2
237,684 - MPMX19_06960 0.88 -0.8
238,433 + MPMX19_06961 0.43 -0.2
238,433 + MPMX19_06961 0.43 -0.1
238,433 + MPMX19_06961 0.43 -0.3
238,433 + MPMX19_06961 0.43 -1.3
238,434 - MPMX19_06961 0.43 -0.7
238,497 - MPMX19_06961 0.48 -0.8
238,682 + MPMX19_06961 0.62 -1.3
238,682 + MPMX19_06961 0.62 +0.4
238,682 + MPMX19_06961 0.62 -0.2
238,682 + MPMX19_06961 0.62 +0.6
238,683 - MPMX19_06961 0.63 -0.1
238,683 - MPMX19_06961 0.63 +0.3
238,683 - MPMX19_06961 0.63 +0.2
238,683 - MPMX19_06961 0.63 -0.7
238,683 - MPMX19_06961 0.63 -0.9
238,683 - MPMX19_06961 0.63 +1.7
238,683 - MPMX19_06961 0.63 -0.5
238,683 - MPMX19_06961 0.63 +0.1
238,683 - MPMX19_06961 0.63 +1.1
238,736 + MPMX19_06961 0.67 -1.1
238,769 + MPMX19_06961 0.69 +0.9
238,769 + MPMX19_06961 0.69 -0.5
238,770 - MPMX19_06961 0.69 -1.7
238,770 - MPMX19_06961 0.69 +0.7
238,770 - MPMX19_06961 0.69 -0.7
238,770 - MPMX19_06961 0.69 -2.3

Or see this region's nucleotide sequence