Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06951 and MPMX19_06952 are separated by 74 nucleotides MPMX19_06952 and MPMX19_06953 are separated by 16 nucleotides MPMX19_06953 and MPMX19_06954 are separated by 65 nucleotides
MPMX19_06951: MPMX19_06951 - Beta-ketoadipyl-CoA thiolase, at 227,421 to 228,626
_06951
MPMX19_06952: MPMX19_06952 - Electron transfer flavoprotein subunit alpha, at 228,701 to 229,636
_06952
MPMX19_06953: MPMX19_06953 - Electron transfer flavoprotein subunit beta, at 229,653 to 230,402
_06953
MPMX19_06954: MPMX19_06954 - hypothetical protein, at 230,468 to 231,445
_06954
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1 at 227.940 kb on + strand, within MPMX19_06951 at 228.624 kb on + strand at 228.624 kb on + strand at 228.624 kb on + strand at 228.624 kb on + strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.676 kb on + strand at 228.677 kb on - strand at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 229.534 kb on + strand, within MPMX19_06952 at 230.409 kb on + strand at 230.409 kb on + strand at 230.409 kb on + strand at 230.410 kb on - strand at 230.410 kb on - strand at 230.416 kb on + strand at 230.416 kb on + strand at 230.416 kb on + strand at 230.417 kb on - strand at 230.417 kb on - strand at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 227,940 + MPMX19_06951 0.43 +0.4 228,624 + +0.1 228,624 + -0.4 228,624 + -0.9 228,624 + +0.3 228,625 - -1.5 228,625 - -1.7 228,625 - -0.7 228,625 - -0.9 228,625 - -0.9 228,625 - +1.7 228,625 - +1.7 228,625 - +0.7 228,625 - -0.8 228,625 - +0.2 228,676 + -0.3 228,677 - -0.2 228,871 - MPMX19_06952 0.18 -1.5 228,871 - MPMX19_06952 0.18 +0.3 228,871 - MPMX19_06952 0.18 -1.9 228,871 - MPMX19_06952 0.18 +0.6 228,871 - MPMX19_06952 0.18 -1.8 228,871 - MPMX19_06952 0.18 -1.2 228,871 - MPMX19_06952 0.18 -0.6 228,871 - MPMX19_06952 0.18 -0.3 228,871 - MPMX19_06952 0.18 -1.9 228,871 - MPMX19_06952 0.18 -1.0 229,534 + MPMX19_06952 0.89 -0.7 230,409 + -1.8 230,409 + +0.1 230,409 + +1.2 230,410 - -0.3 230,410 - -2.0 230,416 + -1.2 230,416 + +1.1 230,416 + -0.0 230,417 - -0.5 230,417 - -1.6 230,596 - MPMX19_06954 0.13 -2.3 230,596 - MPMX19_06954 0.13 -1.5 230,596 - MPMX19_06954 0.13 -1.1 230,596 - MPMX19_06954 0.13 -1.3 230,596 - MPMX19_06954 0.13 -0.5
Or see this region's nucleotide sequence