Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06821

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06818 and MPMX19_06819 are separated by 157 nucleotidesMPMX19_06819 and MPMX19_06820 overlap by 4 nucleotidesMPMX19_06820 and MPMX19_06821 overlap by 8 nucleotidesMPMX19_06821 and MPMX19_06822 are separated by 2 nucleotides MPMX19_06818: MPMX19_06818 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 83,720 to 84,916 _06818 MPMX19_06819: MPMX19_06819 - hypothetical protein, at 85,074 to 85,388 _06819 MPMX19_06820: MPMX19_06820 - hypothetical protein, at 85,385 to 85,783 _06820 MPMX19_06821: MPMX19_06821 - (E)-2-((N-methylformamido)methylene)succinate hydrolase, at 85,776 to 86,603 _06821 MPMX19_06822: MPMX19_06822 - Flavin-dependent trigonelline monooxygenase, oxygenase component, at 86,606 to 87,721 _06822 Position (kb) 85 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1at 84.791 kb on + strand, within MPMX19_06818at 84.959 kb on + strandat 84.982 kb on - strandat 85.220 kb on - strand, within MPMX19_06819at 85.271 kb on - strand, within MPMX19_06819at 85.271 kb on - strand, within MPMX19_06819at 85.271 kb on - strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.336 kb on + strand, within MPMX19_06819at 85.366 kb on + strandat 85.366 kb on + strandat 85.366 kb on + strandat 85.366 kb on + strandat 85.367 kb on - strandat 85.367 kb on - strandat 85.367 kb on - strandat 85.367 kb on - strandat 85.476 kb on + strand, within MPMX19_06820at 85.476 kb on + strand, within MPMX19_06820at 85.476 kb on + strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.477 kb on - strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.656 kb on + strand, within MPMX19_06820at 85.657 kb on - strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.722 kb on + strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 85.723 kb on - strand, within MPMX19_06820at 86.051 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.086 kb on - strand, within MPMX19_06821at 86.155 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.500 kb on + strand, within MPMX19_06821at 86.501 kb on - strand, within MPMX19_06821at 86.557 kb on + strandat 86.557 kb on + strandat 86.799 kb on + strand, within MPMX19_06822at 86.800 kb on - strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.871 kb on + strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.872 kb on - strand, within MPMX19_06822at 86.898 kb on + strand, within MPMX19_06822at 86.971 kb on - strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.018 kb on + strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.019 kb on - strand, within MPMX19_06822at 87.268 kb on - strand, within MPMX19_06822at 87.268 kb on - strand, within MPMX19_06822at 87.285 kb on + strand, within MPMX19_06822at 87.285 kb on + strand, within MPMX19_06822at 87.333 kb on + strand, within MPMX19_06822at 87.333 kb on + strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.334 kb on - strand, within MPMX19_06822at 87.384 kb on + strand, within MPMX19_06822at 87.385 kb on - strand, within MPMX19_06822at 87.385 kb on - strand, within MPMX19_06822at 87.390 kb on + strand, within MPMX19_06822

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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84,791 + MPMX19_06818 0.89 +0.1
84,959 + +0.9
84,982 - +0.9
85,220 - MPMX19_06819 0.46 -1.2
85,271 - MPMX19_06819 0.63 +0.1
85,271 - MPMX19_06819 0.63 -0.1
85,271 - MPMX19_06819 0.63 -0.8
85,336 + MPMX19_06819 0.83 +0.1
85,336 + MPMX19_06819 0.83 -0.1
85,336 + MPMX19_06819 0.83 -0.4
85,336 + MPMX19_06819 0.83 +0.7
85,336 + MPMX19_06819 0.83 +0.1
85,366 + -0.8
85,366 + -0.5
85,366 + +0.9
85,366 + -1.3
85,367 - +1.7
85,367 - -1.8
85,367 - -0.3
85,367 - -0.7
85,476 + MPMX19_06820 0.23 +0.4
85,476 + MPMX19_06820 0.23 +0.1
85,476 + MPMX19_06820 0.23 +0.0
85,477 - MPMX19_06820 0.23 +0.1
85,477 - MPMX19_06820 0.23 +1.0
85,477 - MPMX19_06820 0.23 -1.3
85,477 - MPMX19_06820 0.23 +1.1
85,656 + MPMX19_06820 0.68 -0.1
85,656 + MPMX19_06820 0.68 -0.6
85,656 + MPMX19_06820 0.68 -0.3
85,656 + MPMX19_06820 0.68 -1.4
85,656 + MPMX19_06820 0.68 -0.8
85,656 + MPMX19_06820 0.68 +0.5
85,657 - MPMX19_06820 0.68 -1.4
85,722 + MPMX19_06820 0.84 -0.9
85,722 + MPMX19_06820 0.84 -2.1
85,722 + MPMX19_06820 0.84 +0.9
85,722 + MPMX19_06820 0.84 -1.5
85,722 + MPMX19_06820 0.84 +0.5
85,723 - MPMX19_06820 0.85 -1.3
85,723 - MPMX19_06820 0.85 +1.4
85,723 - MPMX19_06820 0.85 +0.8
86,051 - MPMX19_06821 0.33 -1.0
86,086 - MPMX19_06821 0.37 -0.8
86,086 - MPMX19_06821 0.37 -1.0
86,086 - MPMX19_06821 0.37 -0.0
86,155 + MPMX19_06821 0.46 -0.3
86,500 + MPMX19_06821 0.87 -1.6
86,500 + MPMX19_06821 0.87 -1.9
86,500 + MPMX19_06821 0.87 +0.7
86,500 + MPMX19_06821 0.87 -0.3
86,501 - MPMX19_06821 0.88 -0.5
86,557 + +0.3
86,557 + -0.1
86,799 + MPMX19_06822 0.17 -0.7
86,800 - MPMX19_06822 0.17 +1.5
86,871 + MPMX19_06822 0.24 -0.3
86,871 + MPMX19_06822 0.24 +0.4
86,871 + MPMX19_06822 0.24 -0.8
86,871 + MPMX19_06822 0.24 -1.5
86,871 + MPMX19_06822 0.24 -0.5
86,871 + MPMX19_06822 0.24 +0.9
86,871 + MPMX19_06822 0.24 -1.4
86,871 + MPMX19_06822 0.24 +0.5
86,872 - MPMX19_06822 0.24 -1.7
86,872 - MPMX19_06822 0.24 -2.3
86,872 - MPMX19_06822 0.24 +0.9
86,872 - MPMX19_06822 0.24 -1.1
86,872 - MPMX19_06822 0.24 +1.7
86,872 - MPMX19_06822 0.24 -0.0
86,898 + MPMX19_06822 0.26 -2.8
86,971 - MPMX19_06822 0.33 -0.8
87,018 + MPMX19_06822 0.37 -1.7
87,018 + MPMX19_06822 0.37 +0.7
87,018 + MPMX19_06822 0.37 -1.1
87,018 + MPMX19_06822 0.37 +0.6
87,018 + MPMX19_06822 0.37 +1.7
87,019 - MPMX19_06822 0.37 -0.3
87,019 - MPMX19_06822 0.37 -0.5
87,019 - MPMX19_06822 0.37 -0.6
87,019 - MPMX19_06822 0.37 -0.2
87,268 - MPMX19_06822 0.59 +1.0
87,268 - MPMX19_06822 0.59 -0.1
87,285 + MPMX19_06822 0.61 -3.2
87,285 + MPMX19_06822 0.61 -0.2
87,333 + MPMX19_06822 0.65 -0.6
87,333 + MPMX19_06822 0.65 -1.5
87,334 - MPMX19_06822 0.65 -0.5
87,334 - MPMX19_06822 0.65 -1.6
87,334 - MPMX19_06822 0.65 +0.3
87,334 - MPMX19_06822 0.65 -1.8
87,384 + MPMX19_06822 0.70 -0.5
87,385 - MPMX19_06822 0.70 +0.3
87,385 - MPMX19_06822 0.70 +0.9
87,390 + MPMX19_06822 0.70 -1.3

Or see this region's nucleotide sequence