Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06436 and MPMX19_06437 are separated by 63 nucleotides MPMX19_06437 and MPMX19_06438 are separated by 140 nucleotides MPMX19_06438 and MPMX19_06439 are separated by 163 nucleotides
MPMX19_06436: MPMX19_06436 - hypothetical protein, at 209,835 to 211,703
_06436
MPMX19_06437: MPMX19_06437 - DNA-invertase hin, at 211,767 to 212,345
_06437
MPMX19_06438: MPMX19_06438 - DNA-invertase hin, at 212,486 to 213,052
_06438
MPMX19_06439: MPMX19_06439 - hypothetical protein, at 213,216 to 214,691
_06439
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2 at 210.788 kb on + strand, within MPMX19_06436 at 210.789 kb on - strand, within MPMX19_06436 at 211.351 kb on + strand, within MPMX19_06436 at 211.351 kb on + strand, within MPMX19_06436 at 211.352 kb on - strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.459 kb on + strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.460 kb on - strand, within MPMX19_06436 at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.541 kb on + strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.542 kb on - strand at 211.543 kb on + strand at 211.543 kb on + strand at 211.543 kb on + strand at 211.544 kb on - strand at 211.544 kb on - strand at 211.629 kb on - strand at 211.629 kb on - strand at 211.629 kb on - strand at 211.645 kb on + strand at 211.646 kb on - strand at 211.667 kb on - strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.758 kb on + strand at 211.759 kb on - strand at 211.759 kb on - strand at 211.785 kb on - strand at 211.785 kb on - strand at 211.785 kb on - strand at 211.785 kb on - strand at 211.882 kb on - strand, within MPMX19_06437 at 211.882 kb on - strand, within MPMX19_06437 at 212.120 kb on + strand, within MPMX19_06437 at 212.121 kb on - strand, within MPMX19_06437 at 212.254 kb on + strand, within MPMX19_06437 at 212.254 kb on + strand, within MPMX19_06437 at 212.254 kb on + strand, within MPMX19_06437 at 212.280 kb on + strand, within MPMX19_06437 at 212.281 kb on - strand, within MPMX19_06437 at 212.332 kb on + strand at 212.333 kb on - strand at 212.333 kb on - strand at 212.442 kb on - strand at 212.442 kb on - strand at 212.442 kb on - strand at 212.442 kb on - strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.465 kb on + strand at 212.466 kb on - strand at 212.466 kb on - strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.483 kb on + strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.484 kb on - strand at 212.556 kb on + strand, within MPMX19_06438 at 212.556 kb on + strand, within MPMX19_06438 at 212.575 kb on + strand, within MPMX19_06438 at 212.575 kb on + strand, within MPMX19_06438 at 212.576 kb on - strand, within MPMX19_06438 at 212.576 kb on - strand, within MPMX19_06438 at 212.755 kb on - strand, within MPMX19_06438 at 212.755 kb on - strand, within MPMX19_06438 at 212.866 kb on + strand, within MPMX19_06438 at 212.866 kb on + strand, within MPMX19_06438 at 212.867 kb on - strand, within MPMX19_06438 at 212.946 kb on + strand, within MPMX19_06438 at 212.946 kb on + strand, within MPMX19_06438 at 212.946 kb on + strand, within MPMX19_06438 at 212.946 kb on + strand, within MPMX19_06438 at 212.946 kb on + strand, within MPMX19_06438 at 212.947 kb on - strand, within MPMX19_06438 at 212.947 kb on - strand, within MPMX19_06438 at 212.947 kb on - strand, within MPMX19_06438 at 212.947 kb on - strand, within MPMX19_06438 at 212.947 kb on - strand, within MPMX19_06438 at 212.947 kb on - strand, within MPMX19_06438 at 212.964 kb on - strand, within MPMX19_06438 at 213.030 kb on + strand at 213.031 kb on - strand at 213.063 kb on + strand at 213.063 kb on + strand at 213.063 kb on + strand at 213.063 kb on + strand at 213.064 kb on - strand at 213.064 kb on - strand at 213.064 kb on - strand at 213.068 kb on + strand at 213.069 kb on - strand at 213.086 kb on + strand at 213.087 kb on - strand at 213.097 kb on + strand at 213.097 kb on + strand at 213.097 kb on + strand at 213.098 kb on - strand at 213.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 210,788 + MPMX19_06436 0.51 -1.8 210,789 - MPMX19_06436 0.51 +1.1 211,351 + MPMX19_06436 0.81 -0.6 211,351 + MPMX19_06436 0.81 -2.7 211,352 - MPMX19_06436 0.81 +0.0 211,459 + MPMX19_06436 0.87 +0.0 211,459 + MPMX19_06436 0.87 -0.0 211,459 + MPMX19_06436 0.87 +0.3 211,459 + MPMX19_06436 0.87 -0.8 211,459 + MPMX19_06436 0.87 +0.4 211,459 + MPMX19_06436 0.87 +0.1 211,459 + MPMX19_06436 0.87 +1.1 211,459 + MPMX19_06436 0.87 -0.3 211,459 + MPMX19_06436 0.87 -0.9 211,459 + MPMX19_06436 0.87 -0.1 211,459 + MPMX19_06436 0.87 -1.5 211,459 + MPMX19_06436 0.87 -2.3 211,460 - MPMX19_06436 0.87 +1.5 211,460 - MPMX19_06436 0.87 -1.1 211,460 - MPMX19_06436 0.87 -1.0 211,460 - MPMX19_06436 0.87 -1.8 211,460 - MPMX19_06436 0.87 -0.3 211,460 - MPMX19_06436 0.87 -1.0 211,460 - MPMX19_06436 0.87 +1.6 211,460 - MPMX19_06436 0.87 -1.6 211,460 - MPMX19_06436 0.87 -1.2 211,460 - MPMX19_06436 0.87 -0.0 211,460 - MPMX19_06436 0.87 +0.5 211,541 + +0.6 211,541 + -0.3 211,541 + +0.8 211,541 + -0.3 211,541 + +1.1 211,541 + +0.8 211,541 + +0.7 211,541 + +1.1 211,541 + -0.5 211,541 + -2.2 211,542 - -1.2 211,542 - -2.4 211,542 - -0.6 211,542 - +0.0 211,542 - -0.9 211,542 - -0.0 211,542 - -1.2 211,542 - +0.2 211,542 - -0.7 211,542 - +1.0 211,542 - -0.5 211,543 + +0.6 211,543 + -0.1 211,543 + -0.8 211,544 - +1.1 211,544 - +1.6 211,629 - -2.3 211,629 - +0.8 211,629 - -0.3 211,645 + +1.0 211,646 - +1.8 211,667 - +1.0 211,758 + -0.3 211,758 + -0.3 211,758 + +0.2 211,758 + -1.2 211,758 + -0.5 211,759 - -0.8 211,759 - -1.1 211,785 - -0.2 211,785 - +1.4 211,785 - +0.8 211,785 - +0.8 211,882 - MPMX19_06437 0.20 -2.4 211,882 - MPMX19_06437 0.20 +0.2 212,120 + MPMX19_06437 0.61 -1.5 212,121 - MPMX19_06437 0.61 -1.0 212,254 + MPMX19_06437 0.84 -0.2 212,254 + MPMX19_06437 0.84 +0.2 212,254 + MPMX19_06437 0.84 -1.4 212,280 + MPMX19_06437 0.89 -1.9 212,281 - MPMX19_06437 0.89 -0.8 212,332 + -1.3 212,333 - -0.3 212,333 - +0.7 212,442 - -0.6 212,442 - +0.1 212,442 - +0.4 212,442 - -1.2 212,465 + -0.0 212,465 + +0.6 212,465 + -0.9 212,465 + -0.6 212,465 + -0.6 212,465 + -1.2 212,465 + -0.8 212,466 - -1.3 212,466 - -1.5 212,483 + +1.2 212,483 + -1.2 212,483 + -1.2 212,483 + -1.9 212,483 + -0.3 212,483 + -0.8 212,483 + -0.3 212,483 + +0.2 212,484 - +0.4 212,484 - -0.2 212,484 - -1.0 212,484 - -0.2 212,484 - -0.3 212,484 - -2.1 212,484 - -0.7 212,484 - -0.2 212,484 - -0.7 212,484 - -1.5 212,484 - +0.1 212,484 - -0.5 212,484 - -1.2 212,556 + MPMX19_06438 0.12 +1.3 212,556 + MPMX19_06438 0.12 -1.1 212,575 + MPMX19_06438 0.16 -1.6 212,575 + MPMX19_06438 0.16 -2.6 212,576 - MPMX19_06438 0.16 +0.1 212,576 - MPMX19_06438 0.16 -1.0 212,755 - MPMX19_06438 0.47 -1.3 212,755 - MPMX19_06438 0.47 +0.5 212,866 + MPMX19_06438 0.67 +0.1 212,866 + MPMX19_06438 0.67 -0.5 212,867 - MPMX19_06438 0.67 +0.1 212,946 + MPMX19_06438 0.81 -0.9 212,946 + MPMX19_06438 0.81 -0.0 212,946 + MPMX19_06438 0.81 +0.2 212,946 + MPMX19_06438 0.81 -0.6 212,946 + MPMX19_06438 0.81 +0.7 212,947 - MPMX19_06438 0.81 -1.4 212,947 - MPMX19_06438 0.81 -1.1 212,947 - MPMX19_06438 0.81 -0.9 212,947 - MPMX19_06438 0.81 -0.9 212,947 - MPMX19_06438 0.81 -0.1 212,947 - MPMX19_06438 0.81 +0.7 212,964 - MPMX19_06438 0.84 -1.9 213,030 + -1.8 213,031 - +0.1 213,063 + -1.5 213,063 + -1.0 213,063 + +0.5 213,063 + -2.3 213,064 - -1.6 213,064 - -0.5 213,064 - -0.2 213,068 + +0.0 213,069 - +1.2 213,086 + -0.6 213,087 - -1.8 213,097 + -0.5 213,097 + -0.9 213,097 + -0.6 213,098 - +0.7 213,098 - -0.9
Or see this region's nucleotide sequence