Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06336 and MPMX19_06337 are separated by 185 nucleotides MPMX19_06337 and MPMX19_06338 are separated by 19 nucleotides MPMX19_06338 and MPMX19_06339 are separated by 21 nucleotides MPMX19_06339 and MPMX19_06340 are separated by 174 nucleotides MPMX19_06340 and MPMX19_06341 are separated by 75 nucleotides
MPMX19_06336: MPMX19_06336 - putative oxidoreductase CzcO, at 105,219 to 106,310
_06336
MPMX19_06337: MPMX19_06337 - Arsenic resistance transcriptional regulator ArsR1, at 106,496 to 106,846
_06337
MPMX19_06338: MPMX19_06338 - hypothetical protein, at 106,866 to 107,831
_06338
MPMX19_06339: MPMX19_06339 - hypothetical protein, at 107,853 to 108,089
_06339
MPMX19_06340: MPMX19_06340 - hypothetical protein, at 108,264 to 108,413
_06340
MPMX19_06341: MPMX19_06341 - hypothetical protein, at 108,489 to 108,833
_06341
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 105.869 kb on - strand, within MPMX19_06336 at 105.869 kb on - strand, within MPMX19_06336 at 106.019 kb on - strand, within MPMX19_06336 at 106.030 kb on + strand, within MPMX19_06336 at 106.030 kb on + strand, within MPMX19_06336 at 106.030 kb on + strand, within MPMX19_06336 at 106.042 kb on + strand, within MPMX19_06336 at 106.042 kb on + strand, within MPMX19_06336 at 106.043 kb on - strand, within MPMX19_06336 at 106.043 kb on - strand, within MPMX19_06336 at 106.043 kb on - strand, within MPMX19_06336 at 106.287 kb on + strand at 106.356 kb on + strand at 106.356 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.378 kb on - strand at 106.378 kb on - strand at 106.412 kb on + strand at 106.412 kb on + strand at 106.453 kb on + strand at 106.453 kb on + strand at 106.453 kb on + strand at 106.484 kb on - strand at 106.489 kb on + strand at 106.490 kb on - strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.528 kb on - strand at 106.700 kb on + strand, within MPMX19_06337 at 106.700 kb on + strand, within MPMX19_06337 at 106.700 kb on + strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.880 kb on + strand at 106.881 kb on - strand at 106.905 kb on + strand at 106.906 kb on - strand at 107.036 kb on - strand, within MPMX19_06338 at 107.058 kb on + strand, within MPMX19_06338 at 107.059 kb on - strand, within MPMX19_06338 at 107.059 kb on - strand, within MPMX19_06338 at 107.089 kb on - strand, within MPMX19_06338 at 107.089 kb on - strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.301 kb on - strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.433 kb on + strand, within MPMX19_06338 at 107.434 kb on - strand, within MPMX19_06338 at 107.478 kb on + strand, within MPMX19_06338 at 107.478 kb on + strand, within MPMX19_06338 at 107.478 kb on + strand, within MPMX19_06338 at 107.479 kb on - strand, within MPMX19_06338 at 107.479 kb on - strand, within MPMX19_06338 at 107.479 kb on - strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.698 kb on + strand, within MPMX19_06338 at 107.699 kb on - strand, within MPMX19_06338 at 107.699 kb on - strand, within MPMX19_06338 at 107.699 kb on - strand, within MPMX19_06338 at 107.805 kb on + strand at 107.805 kb on + strand at 107.805 kb on + strand at 108.087 kb on + strand at 108.087 kb on + strand at 108.088 kb on - strand at 108.088 kb on - strand at 108.130 kb on + strand at 108.130 kb on + strand at 108.172 kb on + strand at 108.172 kb on + strand at 108.173 kb on - strand at 108.173 kb on - strand at 108.173 kb on - strand at 108.173 kb on - strand at 108.175 kb on + strand at 108.175 kb on + strand at 108.319 kb on + strand, within MPMX19_06340 at 108.319 kb on + strand, within MPMX19_06340 at 108.320 kb on - strand, within MPMX19_06340 at 108.344 kb on + strand, within MPMX19_06340 at 108.344 kb on + strand, within MPMX19_06340 at 108.345 kb on - strand, within MPMX19_06340 at 108.345 kb on - strand, within MPMX19_06340 at 108.345 kb on - strand, within MPMX19_06340 at 108.348 kb on + strand, within MPMX19_06340 at 108.349 kb on - strand, within MPMX19_06340 at 108.485 kb on + strand at 108.485 kb on + strand at 108.485 kb on + strand at 108.486 kb on - strand at 108.486 kb on - strand at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 105,869 - MPMX19_06336 0.60 -0.9 105,869 - MPMX19_06336 0.60 -0.4 106,019 - MPMX19_06336 0.73 -0.7 106,030 + MPMX19_06336 0.74 -0.0 106,030 + MPMX19_06336 0.74 -1.5 106,030 + MPMX19_06336 0.74 -1.2 106,042 + MPMX19_06336 0.75 -1.5 106,042 + MPMX19_06336 0.75 -0.8 106,043 - MPMX19_06336 0.75 -0.0 106,043 - MPMX19_06336 0.75 -1.0 106,043 - MPMX19_06336 0.75 -0.9 106,287 + -0.5 106,356 + -1.0 106,356 + -0.8 106,374 + -0.8 106,374 + -0.2 106,374 + -0.5 106,374 + -1.5 106,374 + +0.6 106,374 + -1.4 106,374 + -0.4 106,375 - -0.0 106,375 - -0.4 106,375 - -1.5 106,375 - -1.0 106,375 - -0.5 106,375 - +0.4 106,375 - -1.2 106,375 - -0.9 106,375 - -0.4 106,377 + -0.6 106,377 + -0.2 106,377 + -0.2 106,377 + -1.3 106,377 + -1.5 106,377 + -1.0 106,378 - +0.6 106,378 - -1.2 106,412 + -0.0 106,412 + -1.3 106,453 + +1.2 106,453 + +0.8 106,453 + -0.2 106,484 - -0.8 106,489 + -2.0 106,490 - -0.8 106,495 + -0.6 106,495 + -0.9 106,495 + +1.5 106,495 + -0.0 106,495 + -0.2 106,495 + +0.9 106,496 - +1.0 106,496 - -2.0 106,496 - -0.8 106,496 - -1.8 106,496 - -0.5 106,496 - +0.1 106,496 - -1.1 106,528 - -1.1 106,700 + MPMX19_06337 0.58 -0.2 106,700 + MPMX19_06337 0.58 +0.2 106,700 + MPMX19_06337 0.58 -1.1 106,701 - MPMX19_06337 0.58 +0.4 106,701 - MPMX19_06337 0.58 -0.0 106,701 - MPMX19_06337 0.58 -3.4 106,701 - MPMX19_06337 0.58 -0.8 106,701 - MPMX19_06337 0.58 -2.1 106,701 - MPMX19_06337 0.58 -1.3 106,701 - MPMX19_06337 0.58 -0.2 106,880 + +0.5 106,881 - -0.2 106,905 + +0.2 106,906 - -0.8 107,036 - MPMX19_06338 0.18 +0.5 107,058 + MPMX19_06338 0.20 -0.7 107,059 - MPMX19_06338 0.20 +1.8 107,059 - MPMX19_06338 0.20 -0.4 107,089 - MPMX19_06338 0.23 +0.6 107,089 - MPMX19_06338 0.23 +0.8 107,280 + MPMX19_06338 0.43 -0.8 107,280 + MPMX19_06338 0.43 +1.3 107,280 + MPMX19_06338 0.43 +0.1 107,280 + MPMX19_06338 0.43 +1.0 107,280 + MPMX19_06338 0.43 +0.8 107,280 + MPMX19_06338 0.43 -1.5 107,280 + MPMX19_06338 0.43 +1.1 107,280 + MPMX19_06338 0.43 +0.2 107,280 + MPMX19_06338 0.43 -1.2 107,280 + MPMX19_06338 0.43 +1.2 107,280 + MPMX19_06338 0.43 -0.8 107,280 + MPMX19_06338 0.43 -1.0 107,280 + MPMX19_06338 0.43 -2.0 107,280 + MPMX19_06338 0.43 -0.8 107,280 + MPMX19_06338 0.43 +1.2 107,280 + MPMX19_06338 0.43 +0.5 107,280 + MPMX19_06338 0.43 +1.2 107,280 + MPMX19_06338 0.43 +0.5 107,280 + MPMX19_06338 0.43 -0.8 107,280 + MPMX19_06338 0.43 +0.2 107,280 + MPMX19_06338 0.43 -1.5 107,280 + MPMX19_06338 0.43 +0.1 107,280 + MPMX19_06338 0.43 +0.8 107,280 + MPMX19_06338 0.43 -1.5 107,281 - MPMX19_06338 0.43 +0.7 107,281 - MPMX19_06338 0.43 -0.0 107,281 - MPMX19_06338 0.43 -1.0 107,281 - MPMX19_06338 0.43 -0.8 107,281 - MPMX19_06338 0.43 +0.8 107,281 - MPMX19_06338 0.43 +0.2 107,281 - MPMX19_06338 0.43 -0.5 107,281 - MPMX19_06338 0.43 +0.0 107,281 - MPMX19_06338 0.43 -0.8 107,281 - MPMX19_06338 0.43 -1.1 107,281 - MPMX19_06338 0.43 -0.2 107,281 - MPMX19_06338 0.43 -0.6 107,281 - MPMX19_06338 0.43 +1.4 107,281 - MPMX19_06338 0.43 -1.4 107,281 - MPMX19_06338 0.43 +1.2 107,281 - MPMX19_06338 0.43 -0.5 107,281 - MPMX19_06338 0.43 +0.4 107,300 + MPMX19_06338 0.45 -1.3 107,300 + MPMX19_06338 0.45 -0.2 107,300 + MPMX19_06338 0.45 -0.4 107,300 + MPMX19_06338 0.45 +1.1 107,301 - MPMX19_06338 0.45 -1.3 107,349 + MPMX19_06338 0.50 -1.4 107,349 + MPMX19_06338 0.50 +0.1 107,349 + MPMX19_06338 0.50 +0.0 107,349 + MPMX19_06338 0.50 +0.6 107,349 + MPMX19_06338 0.50 +0.4 107,349 + MPMX19_06338 0.50 +0.1 107,350 - MPMX19_06338 0.50 -0.8 107,350 - MPMX19_06338 0.50 -0.2 107,350 - MPMX19_06338 0.50 -0.3 107,350 - MPMX19_06338 0.50 +0.4 107,350 - MPMX19_06338 0.50 -0.7 107,350 - MPMX19_06338 0.50 +1.8 107,361 + MPMX19_06338 0.51 +0.7 107,361 + MPMX19_06338 0.51 -0.2 107,361 + MPMX19_06338 0.51 +0.5 107,361 + MPMX19_06338 0.51 +0.6 107,361 + MPMX19_06338 0.51 -0.0 107,361 + MPMX19_06338 0.51 -0.4 107,361 + MPMX19_06338 0.51 +1.8 107,362 - MPMX19_06338 0.51 -2.0 107,362 - MPMX19_06338 0.51 +1.5 107,362 - MPMX19_06338 0.51 +0.7 107,362 - MPMX19_06338 0.51 -2.8 107,362 - MPMX19_06338 0.51 -1.0 107,362 - MPMX19_06338 0.51 -1.0 107,362 - MPMX19_06338 0.51 -0.2 107,362 - MPMX19_06338 0.51 -0.3 107,433 + MPMX19_06338 0.59 +0.5 107,434 - MPMX19_06338 0.59 -2.0 107,478 + MPMX19_06338 0.63 -0.5 107,478 + MPMX19_06338 0.63 -1.6 107,478 + MPMX19_06338 0.63 -1.4 107,479 - MPMX19_06338 0.63 -0.5 107,479 - MPMX19_06338 0.63 -2.0 107,479 - MPMX19_06338 0.63 -0.2 107,520 + MPMX19_06338 0.68 +0.4 107,520 + MPMX19_06338 0.68 +0.5 107,520 + MPMX19_06338 0.68 -0.2 107,520 + MPMX19_06338 0.68 -0.7 107,521 - MPMX19_06338 0.68 -0.5 107,521 - MPMX19_06338 0.68 +0.0 107,521 - MPMX19_06338 0.68 -1.0 107,521 - MPMX19_06338 0.68 -0.5 107,521 - MPMX19_06338 0.68 +0.7 107,521 - MPMX19_06338 0.68 -0.3 107,521 - MPMX19_06338 0.68 -0.2 107,547 + MPMX19_06338 0.70 +0.1 107,547 + MPMX19_06338 0.70 -1.0 107,547 + MPMX19_06338 0.70 +0.1 107,547 + MPMX19_06338 0.70 -0.8 107,547 + MPMX19_06338 0.70 -1.5 107,547 + MPMX19_06338 0.70 +0.4 107,698 + MPMX19_06338 0.86 +0.9 107,699 - MPMX19_06338 0.86 -0.5 107,699 - MPMX19_06338 0.86 -0.5 107,699 - MPMX19_06338 0.86 +0.2 107,805 + -1.0 107,805 + -1.6 107,805 + -1.0 108,087 + -1.8 108,087 + +0.0 108,088 - +0.6 108,088 - +0.5 108,130 + -0.6 108,130 + -0.1 108,172 + +0.7 108,172 + +1.3 108,173 - +0.8 108,173 - -0.8 108,173 - -0.2 108,173 - +0.8 108,175 + -2.3 108,175 + +0.5 108,319 + MPMX19_06340 0.37 -0.3 108,319 + MPMX19_06340 0.37 -0.5 108,320 - MPMX19_06340 0.37 -0.6 108,344 + MPMX19_06340 0.53 -0.1 108,344 + MPMX19_06340 0.53 -1.0 108,345 - MPMX19_06340 0.54 -0.4 108,345 - MPMX19_06340 0.54 -0.5 108,345 - MPMX19_06340 0.54 -0.8 108,348 + MPMX19_06340 0.56 -0.3 108,349 - MPMX19_06340 0.57 +0.2 108,485 + -2.3 108,485 + +0.3 108,485 + +0.5 108,486 - -0.3 108,486 - -0.3 108,606 + MPMX19_06341 0.34 +0.7 108,606 + MPMX19_06341 0.34 -0.6 108,606 + MPMX19_06341 0.34 -0.1 108,606 + MPMX19_06341 0.34 +0.2 108,606 + MPMX19_06341 0.34 -0.0 108,606 + MPMX19_06341 0.34 -0.1 108,606 + MPMX19_06341 0.34 +0.6 108,606 + MPMX19_06341 0.34 -0.4 108,607 - MPMX19_06341 0.34 +0.4 108,607 - MPMX19_06341 0.34 +0.8 108,607 - MPMX19_06341 0.34 -0.5 108,607 - MPMX19_06341 0.34 -0.8 108,607 - MPMX19_06341 0.34 -1.0 108,607 - MPMX19_06341 0.34 -0.4 108,607 - MPMX19_06341 0.34 +0.0 108,607 - MPMX19_06341 0.34 +0.6 108,825 - +0.4
Or see this region's nucleotide sequence