Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05666 and MPMX19_05667 are separated by 19 nucleotides MPMX19_05667 and MPMX19_05668 overlap by 4 nucleotides MPMX19_05668 and MPMX19_05669 are separated by 128 nucleotides MPMX19_05669 and MPMX19_05670 are separated by 170 nucleotides
MPMX19_05666: MPMX19_05666 - Periplasmic nitrate reductase, at 383,754 to 386,666
_05666
MPMX19_05667: MPMX19_05667 - hypothetical protein, at 386,686 to 386,910
_05667
MPMX19_05668: MPMX19_05668 - Chaperone protein TorD, at 386,907 to 387,515
_05668
MPMX19_05669: MPMX19_05669 - hypothetical protein, at 387,644 to 387,850
_05669
MPMX19_05670: MPMX19_05670 - Quinolinate synthase A, at 388,021 to 389,031
_05670
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.996 kb on + strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 385.997 kb on - strand, within MPMX19_05666 at 386.017 kb on + strand, within MPMX19_05666 at 386.018 kb on - strand, within MPMX19_05666 at 386.117 kb on - strand, within MPMX19_05666 at 386.122 kb on + strand, within MPMX19_05666 at 386.123 kb on - strand, within MPMX19_05666 at 386.123 kb on - strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.275 kb on + strand, within MPMX19_05666 at 386.276 kb on - strand, within MPMX19_05666 at 386.276 kb on - strand, within MPMX19_05666 at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.687 kb on + strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.688 kb on - strand at 386.705 kb on + strand at 386.705 kb on + strand at 386.705 kb on + strand at 386.705 kb on + strand at 386.706 kb on - strand at 386.706 kb on - strand at 386.706 kb on - strand at 386.706 kb on - strand at 387.001 kb on + strand, within MPMX19_05668 at 387.002 kb on - strand, within MPMX19_05668 at 387.002 kb on - strand, within MPMX19_05668 at 387.250 kb on + strand, within MPMX19_05668 at 387.250 kb on + strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.251 kb on - strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.253 kb on + strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.254 kb on - strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.262 kb on + strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.263 kb on - strand, within MPMX19_05668 at 387.463 kb on + strand at 387.464 kb on - strand at 387.562 kb on - strand at 387.562 kb on - strand at 387.562 kb on - strand at 387.873 kb on + strand at 387.873 kb on + strand at 387.874 kb on - strand at 387.874 kb on - strand at 387.964 kb on - strand at 387.980 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.045 kb on + strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.046 kb on - strand at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.195 kb on + strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.196 kb on - strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.456 kb on + strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670 at 388.457 kb on - strand, within MPMX19_05670
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 385,996 + MPMX19_05666 0.77 +0.5 385,996 + MPMX19_05666 0.77 -0.4 385,996 + MPMX19_05666 0.77 -0.9 385,996 + MPMX19_05666 0.77 +0.9 385,996 + MPMX19_05666 0.77 -1.1 385,996 + MPMX19_05666 0.77 +0.5 385,996 + MPMX19_05666 0.77 -0.3 385,996 + MPMX19_05666 0.77 -0.7 385,996 + MPMX19_05666 0.77 +0.5 385,996 + MPMX19_05666 0.77 -0.6 385,996 + MPMX19_05666 0.77 -0.9 385,996 + MPMX19_05666 0.77 -1.0 385,996 + MPMX19_05666 0.77 -1.4 385,996 + MPMX19_05666 0.77 -0.3 385,996 + MPMX19_05666 0.77 -1.5 385,996 + MPMX19_05666 0.77 -2.1 385,996 + MPMX19_05666 0.77 -0.9 385,996 + MPMX19_05666 0.77 +0.9 385,996 + MPMX19_05666 0.77 -1.1 385,996 + MPMX19_05666 0.77 +0.4 385,996 + MPMX19_05666 0.77 -0.6 385,997 - MPMX19_05666 0.77 +0.4 385,997 - MPMX19_05666 0.77 +0.2 385,997 - MPMX19_05666 0.77 -0.1 385,997 - MPMX19_05666 0.77 -0.7 385,997 - MPMX19_05666 0.77 -1.3 385,997 - MPMX19_05666 0.77 +0.2 385,997 - MPMX19_05666 0.77 -0.4 385,997 - MPMX19_05666 0.77 +0.2 385,997 - MPMX19_05666 0.77 +0.7 385,997 - MPMX19_05666 0.77 -0.4 385,997 - MPMX19_05666 0.77 -0.9 385,997 - MPMX19_05666 0.77 -0.8 385,997 - MPMX19_05666 0.77 -1.8 385,997 - MPMX19_05666 0.77 -0.5 386,017 + MPMX19_05666 0.78 -2.0 386,018 - MPMX19_05666 0.78 -0.6 386,117 - MPMX19_05666 0.81 +0.6 386,122 + MPMX19_05666 0.81 -2.2 386,123 - MPMX19_05666 0.81 -1.0 386,123 - MPMX19_05666 0.81 +0.9 386,275 + MPMX19_05666 0.87 -0.1 386,275 + MPMX19_05666 0.87 +0.7 386,275 + MPMX19_05666 0.87 -0.9 386,275 + MPMX19_05666 0.87 -0.1 386,276 - MPMX19_05666 0.87 -0.3 386,276 - MPMX19_05666 0.87 +1.4 386,687 + +1.1 386,687 + -0.9 386,687 + -2.0 386,687 + -1.2 386,687 + +1.7 386,687 + -0.3 386,687 + +1.7 386,688 - -0.6 386,688 - +0.1 386,688 - +1.0 386,688 - -0.1 386,688 - +0.5 386,705 + -0.3 386,705 + -0.3 386,705 + -0.2 386,705 + -1.2 386,706 - +0.9 386,706 - +0.1 386,706 - -0.0 386,706 - +2.1 387,001 + MPMX19_05668 0.15 -2.0 387,002 - MPMX19_05668 0.16 +0.3 387,002 - MPMX19_05668 0.16 -1.1 387,250 + MPMX19_05668 0.56 +0.2 387,250 + MPMX19_05668 0.56 -0.8 387,251 - MPMX19_05668 0.56 +0.1 387,251 - MPMX19_05668 0.56 -1.6 387,251 - MPMX19_05668 0.56 -1.1 387,253 + MPMX19_05668 0.57 +0.3 387,253 + MPMX19_05668 0.57 -1.2 387,253 + MPMX19_05668 0.57 +0.1 387,253 + MPMX19_05668 0.57 -1.5 387,253 + MPMX19_05668 0.57 -1.3 387,253 + MPMX19_05668 0.57 -0.1 387,253 + MPMX19_05668 0.57 -1.9 387,253 + MPMX19_05668 0.57 -0.6 387,253 + MPMX19_05668 0.57 -1.6 387,253 + MPMX19_05668 0.57 -0.6 387,253 + MPMX19_05668 0.57 -1.5 387,254 - MPMX19_05668 0.57 +0.1 387,254 - MPMX19_05668 0.57 -0.3 387,254 - MPMX19_05668 0.57 -1.1 387,254 - MPMX19_05668 0.57 +0.5 387,254 - MPMX19_05668 0.57 -2.0 387,254 - MPMX19_05668 0.57 -0.8 387,254 - MPMX19_05668 0.57 -0.9 387,254 - MPMX19_05668 0.57 -0.6 387,262 + MPMX19_05668 0.58 -0.6 387,262 + MPMX19_05668 0.58 +0.5 387,262 + MPMX19_05668 0.58 -1.3 387,262 + MPMX19_05668 0.58 -1.6 387,262 + MPMX19_05668 0.58 -0.3 387,262 + MPMX19_05668 0.58 +0.8 387,262 + MPMX19_05668 0.58 +0.4 387,262 + MPMX19_05668 0.58 -0.9 387,262 + MPMX19_05668 0.58 -0.9 387,262 + MPMX19_05668 0.58 -2.1 387,262 + MPMX19_05668 0.58 -1.6 387,262 + MPMX19_05668 0.58 -1.1 387,262 + MPMX19_05668 0.58 -0.2 387,262 + MPMX19_05668 0.58 +0.1 387,263 - MPMX19_05668 0.58 +0.5 387,263 - MPMX19_05668 0.58 +1.7 387,263 - MPMX19_05668 0.58 -2.4 387,263 - MPMX19_05668 0.58 -0.1 387,263 - MPMX19_05668 0.58 -0.8 387,263 - MPMX19_05668 0.58 -1.8 387,263 - MPMX19_05668 0.58 -1.3 387,263 - MPMX19_05668 0.58 +0.6 387,263 - MPMX19_05668 0.58 +0.2 387,263 - MPMX19_05668 0.58 +0.5 387,263 - MPMX19_05668 0.58 +0.1 387,263 - MPMX19_05668 0.58 -1.0 387,263 - MPMX19_05668 0.58 -0.3 387,263 - MPMX19_05668 0.58 -1.2 387,463 + +0.6 387,464 - -0.8 387,562 - +1.7 387,562 - -3.3 387,562 - -0.4 387,873 + -0.7 387,873 + +0.1 387,874 - -0.1 387,874 - -0.6 387,964 - -0.6 387,980 + -1.0 388,045 + +0.3 388,045 + -0.7 388,045 + -1.8 388,045 + -1.6 388,045 + +0.9 388,046 - -0.6 388,046 - -0.5 388,046 - -0.5 388,046 - -1.5 388,046 - -0.1 388,046 - -1.8 388,046 - +0.9 388,046 - -0.1 388,046 - -1.6 388,046 - -0.3 388,046 - -1.0 388,195 + MPMX19_05670 0.17 -1.0 388,195 + MPMX19_05670 0.17 +0.7 388,195 + MPMX19_05670 0.17 -0.9 388,195 + MPMX19_05670 0.17 -0.3 388,195 + MPMX19_05670 0.17 +0.1 388,195 + MPMX19_05670 0.17 +0.0 388,195 + MPMX19_05670 0.17 +0.5 388,196 - MPMX19_05670 0.17 -0.3 388,196 - MPMX19_05670 0.17 +0.8 388,196 - MPMX19_05670 0.17 -0.9 388,196 - MPMX19_05670 0.17 -0.4 388,196 - MPMX19_05670 0.17 +0.7 388,196 - MPMX19_05670 0.17 -1.5 388,456 + MPMX19_05670 0.43 -0.9 388,456 + MPMX19_05670 0.43 +0.1 388,456 + MPMX19_05670 0.43 +0.1 388,456 + MPMX19_05670 0.43 +0.9 388,456 + MPMX19_05670 0.43 -2.0 388,456 + MPMX19_05670 0.43 -0.4 388,456 + MPMX19_05670 0.43 -0.4 388,456 + MPMX19_05670 0.43 +0.2 388,457 - MPMX19_05670 0.43 -1.1 388,457 - MPMX19_05670 0.43 -0.8 388,457 - MPMX19_05670 0.43 -0.3 388,457 - MPMX19_05670 0.43 +0.7 388,457 - MPMX19_05670 0.43 +0.5 388,457 - MPMX19_05670 0.43 -0.9 388,457 - MPMX19_05670 0.43 -0.3 388,457 - MPMX19_05670 0.43 +1.1 388,457 - MPMX19_05670 0.43 +0.8 388,457 - MPMX19_05670 0.43 -0.2 388,457 - MPMX19_05670 0.43 -2.0 388,457 - MPMX19_05670 0.43 -0.3 388,457 - MPMX19_05670 0.43 -1.9 388,457 - MPMX19_05670 0.43 -0.4 388,457 - MPMX19_05670 0.43 -1.2
Or see this region's nucleotide sequence