Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05516

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05515 and MPMX19_05516 are separated by 89 nucleotidesMPMX19_05516 and MPMX19_05517 overlap by 8 nucleotides MPMX19_05515: MPMX19_05515 - High-affinity zinc uptake system protein ZnuA, at 220,612 to 221,583 _05515 MPMX19_05516: MPMX19_05516 - Zinc import ATP-binding protein ZnuC, at 221,673 to 222,473 _05516 MPMX19_05517: MPMX19_05517 - High-affinity zinc uptake system membrane protein ZnuB, at 222,466 to 223,251 _05517 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.892 kb on + strand, within MPMX19_05515at 220.892 kb on + strand, within MPMX19_05515at 220.892 kb on + strand, within MPMX19_05515at 220.892 kb on + strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.893 kb on - strand, within MPMX19_05515at 220.907 kb on + strand, within MPMX19_05515at 220.907 kb on + strand, within MPMX19_05515at 220.907 kb on + strand, within MPMX19_05515at 220.908 kb on - strand, within MPMX19_05515at 220.908 kb on - strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.913 kb on + strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 220.914 kb on - strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.024 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.387 kb on + strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.388 kb on - strand, within MPMX19_05515at 221.597 kb on + strandat 221.597 kb on + strandat 221.598 kb on - strandat 221.598 kb on - strandat 221.632 kb on - strandat 221.632 kb on - strandat 221.664 kb on + strandat 221.670 kb on - strandat 221.670 kb on - strandat 221.685 kb on + strandat 221.686 kb on - strandat 221.699 kb on + strandat 221.699 kb on + strandat 221.700 kb on - strandat 221.700 kb on - strandat 221.700 kb on - strandat 221.700 kb on - strandat 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.925 kb on + strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 221.926 kb on - strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.351 kb on + strand, within MPMX19_05516at 222.352 kb on - strand, within MPMX19_05516at 222.352 kb on - strand, within MPMX19_05516at 222.352 kb on - strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.393 kb on + strand, within MPMX19_05516at 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.394 kb on - strandat 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.562 kb on + strand, within MPMX19_05517at 222.563 kb on - strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.805 kb on + strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.806 kb on - strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.856 kb on + strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 222.857 kb on - strand, within MPMX19_05517at 223.343 kb on + strandat 223.343 kb on + strandat 223.344 kb on - strandat 223.344 kb on - strandat 223.344 kb on - strandat 223.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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220,892 + MPMX19_05515 0.29 +0.2
220,892 + MPMX19_05515 0.29 +0.2
220,892 + MPMX19_05515 0.29 -2.5
220,892 + MPMX19_05515 0.29 -0.4
220,893 - MPMX19_05515 0.29 -0.9
220,893 - MPMX19_05515 0.29 +0.9
220,893 - MPMX19_05515 0.29 -1.2
220,893 - MPMX19_05515 0.29 -0.6
220,907 + MPMX19_05515 0.30 -0.7
220,907 + MPMX19_05515 0.30 -0.1
220,907 + MPMX19_05515 0.30 -1.6
220,908 - MPMX19_05515 0.30 +0.8
220,908 - MPMX19_05515 0.30 +0.3
220,913 + MPMX19_05515 0.31 +0.1
220,913 + MPMX19_05515 0.31 -0.1
220,913 + MPMX19_05515 0.31 +0.1
220,913 + MPMX19_05515 0.31 +0.1
220,913 + MPMX19_05515 0.31 -0.4
220,913 + MPMX19_05515 0.31 +0.4
220,913 + MPMX19_05515 0.31 +0.8
220,914 - MPMX19_05515 0.31 -0.5
220,914 - MPMX19_05515 0.31 -1.4
220,914 - MPMX19_05515 0.31 +0.4
220,914 - MPMX19_05515 0.31 +1.2
220,914 - MPMX19_05515 0.31 +0.2
221,024 + MPMX19_05515 0.42 -0.3
221,024 + MPMX19_05515 0.42 +0.4
221,024 + MPMX19_05515 0.42 -0.8
221,024 + MPMX19_05515 0.42 -0.9
221,024 + MPMX19_05515 0.42 -1.7
221,387 + MPMX19_05515 0.80 -0.1
221,387 + MPMX19_05515 0.80 -0.7
221,387 + MPMX19_05515 0.80 -1.1
221,387 + MPMX19_05515 0.80 +1.1
221,387 + MPMX19_05515 0.80 +0.8
221,387 + MPMX19_05515 0.80 -1.4
221,387 + MPMX19_05515 0.80 -0.2
221,387 + MPMX19_05515 0.80 -1.1
221,388 - MPMX19_05515 0.80 -1.2
221,388 - MPMX19_05515 0.80 +0.1
221,388 - MPMX19_05515 0.80 -0.1
221,388 - MPMX19_05515 0.80 +0.8
221,388 - MPMX19_05515 0.80 -1.3
221,388 - MPMX19_05515 0.80 -0.5
221,388 - MPMX19_05515 0.80 +1.0
221,388 - MPMX19_05515 0.80 -0.5
221,388 - MPMX19_05515 0.80 -0.3
221,388 - MPMX19_05515 0.80 -0.8
221,388 - MPMX19_05515 0.80 +1.8
221,388 - MPMX19_05515 0.80 -2.2
221,388 - MPMX19_05515 0.80 +0.9
221,388 - MPMX19_05515 0.80 -1.2
221,388 - MPMX19_05515 0.80 -0.1
221,388 - MPMX19_05515 0.80 -0.7
221,388 - MPMX19_05515 0.80 -1.8
221,597 + +0.4
221,597 + -3.3
221,598 - -1.7
221,598 - -0.1
221,632 - +0.9
221,632 - -2.2
221,664 + +0.4
221,670 - -1.1
221,670 - -0.1
221,685 + -0.6
221,686 - +0.9
221,699 + -1.6
221,699 + -0.2
221,700 - -1.3
221,700 - +0.5
221,700 - -0.5
221,700 - -1.2
221,925 + MPMX19_05516 0.31 +0.2
221,925 + MPMX19_05516 0.31 +1.2
221,925 + MPMX19_05516 0.31 -1.9
221,925 + MPMX19_05516 0.31 -0.7
221,925 + MPMX19_05516 0.31 +1.3
221,925 + MPMX19_05516 0.31 +1.9
221,926 - MPMX19_05516 0.32 +0.6
221,926 - MPMX19_05516 0.32 +0.2
221,926 - MPMX19_05516 0.32 -0.7
221,926 - MPMX19_05516 0.32 +1.0
222,351 + MPMX19_05516 0.85 -0.1
222,351 + MPMX19_05516 0.85 +1.1
222,351 + MPMX19_05516 0.85 -0.2
222,351 + MPMX19_05516 0.85 +1.9
222,351 + MPMX19_05516 0.85 -0.4
222,352 - MPMX19_05516 0.85 -1.2
222,352 - MPMX19_05516 0.85 -0.2
222,352 - MPMX19_05516 0.85 -0.4
222,393 + MPMX19_05516 0.90 -1.4
222,393 + MPMX19_05516 0.90 -0.4
222,393 + MPMX19_05516 0.90 -0.8
222,393 + MPMX19_05516 0.90 +1.1
222,393 + MPMX19_05516 0.90 -1.2
222,393 + MPMX19_05516 0.90 +0.2
222,393 + MPMX19_05516 0.90 -0.4
222,393 + MPMX19_05516 0.90 -0.7
222,393 + MPMX19_05516 0.90 +0.5
222,393 + MPMX19_05516 0.90 -1.1
222,393 + MPMX19_05516 0.90 -0.1
222,393 + MPMX19_05516 0.90 -1.5
222,393 + MPMX19_05516 0.90 -0.5
222,393 + MPMX19_05516 0.90 -0.1
222,393 + MPMX19_05516 0.90 -1.1
222,393 + MPMX19_05516 0.90 -0.5
222,393 + MPMX19_05516 0.90 -0.9
222,393 + MPMX19_05516 0.90 +0.8
222,393 + MPMX19_05516 0.90 -2.2
222,393 + MPMX19_05516 0.90 -2.3
222,394 - -0.7
222,394 - +0.8
222,394 - +0.8
222,394 - -1.4
222,394 - +0.3
222,394 - -1.2
222,394 - -0.5
222,394 - -1.1
222,394 - -0.4
222,394 - +0.9
222,394 - -0.4
222,394 - +0.0
222,394 - +0.4
222,562 + MPMX19_05517 0.12 -0.7
222,562 + MPMX19_05517 0.12 +0.8
222,562 + MPMX19_05517 0.12 -0.1
222,562 + MPMX19_05517 0.12 -2.1
222,562 + MPMX19_05517 0.12 -1.8
222,563 - MPMX19_05517 0.12 +0.2
222,805 + MPMX19_05517 0.43 +0.2
222,805 + MPMX19_05517 0.43 +0.2
222,805 + MPMX19_05517 0.43 -0.8
222,805 + MPMX19_05517 0.43 +0.1
222,806 - MPMX19_05517 0.43 -0.6
222,806 - MPMX19_05517 0.43 -0.6
222,806 - MPMX19_05517 0.43 -0.1
222,806 - MPMX19_05517 0.43 -0.3
222,856 + MPMX19_05517 0.50 -0.5
222,856 + MPMX19_05517 0.50 +0.1
222,856 + MPMX19_05517 0.50 +1.1
222,856 + MPMX19_05517 0.50 -1.8
222,856 + MPMX19_05517 0.50 +0.0
222,856 + MPMX19_05517 0.50 +0.9
222,856 + MPMX19_05517 0.50 +0.0
222,856 + MPMX19_05517 0.50 +0.0
222,856 + MPMX19_05517 0.50 -1.1
222,857 - MPMX19_05517 0.50 -1.9
222,857 - MPMX19_05517 0.50 -0.2
222,857 - MPMX19_05517 0.50 -0.3
222,857 - MPMX19_05517 0.50 -2.1
222,857 - MPMX19_05517 0.50 +0.4
222,857 - MPMX19_05517 0.50 -0.8
222,857 - MPMX19_05517 0.50 -0.6
222,857 - MPMX19_05517 0.50 -0.6
222,857 - MPMX19_05517 0.50 -0.8
223,343 + -0.4
223,343 + +0.0
223,344 - +0.2
223,344 - +1.5
223,344 - +0.5
223,344 - +1.4

Or see this region's nucleotide sequence