Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05386 and MPMX19_05387 are separated by 425 nucleotides MPMX19_05387 and MPMX19_05388 are separated by 73 nucleotides MPMX19_05388 and MPMX19_05389 are separated by 42 nucleotides
MPMX19_05386: MPMX19_05386 - hypothetical protein, at 61,362 to 63,626
_05386
MPMX19_05387: MPMX19_05387 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 64,052 to 64,537
_05387
MPMX19_05388: MPMX19_05388 - Leucine-responsive regulatory protein, at 64,611 to 65,036
_05388
MPMX19_05389: MPMX19_05389 - Pyruvate kinase, at 65,079 to 66,572
_05389
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.775 kb on + strand at 63.877 kb on - strand at 63.899 kb on - strand at 63.956 kb on - strand at 63.956 kb on - strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.062 kb on - strand at 64.062 kb on - strand at 64.178 kb on + strand, within MPMX19_05387 at 64.179 kb on - strand, within MPMX19_05387 at 64.179 kb on - strand, within MPMX19_05387 at 64.191 kb on - strand, within MPMX19_05387 at 64.250 kb on + strand, within MPMX19_05387 at 64.250 kb on + strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.515 kb on - strand at 64.535 kb on + strand at 64.536 kb on - strand at 64.536 kb on - strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.906 kb on - strand, within MPMX19_05388 at 64.906 kb on - strand, within MPMX19_05388 at 65.230 kb on + strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.491 kb on + strand, within MPMX19_05389 at 65.491 kb on + strand, within MPMX19_05389 at 65.492 kb on - strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.605 kb on + strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389 at 65.606 kb on - strand, within MPMX19_05389
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 63,775 + -0.3 63,877 - -0.2 63,899 - +0.2 63,956 - +0.2 63,956 - -0.6 64,012 + +0.7 64,012 + -1.7 64,012 + +0.2 64,012 + -2.0 64,012 + -2.0 64,012 + -0.3 64,012 + -0.1 64,012 + -1.0 64,012 + -0.4 64,012 + -1.6 64,012 + +0.6 64,012 + +0.0 64,012 + -1.9 64,012 + +0.7 64,013 - +0.7 64,013 - -0.3 64,013 - -0.3 64,013 - -2.9 64,013 - +0.7 64,062 - +0.3 64,062 - -0.6 64,178 + MPMX19_05387 0.26 -1.5 64,179 - MPMX19_05387 0.26 -2.7 64,179 - MPMX19_05387 0.26 -1.4 64,191 - MPMX19_05387 0.29 -0.7 64,250 + MPMX19_05387 0.41 +0.9 64,250 + MPMX19_05387 0.41 -2.9 64,251 - MPMX19_05387 0.41 +0.5 64,251 - MPMX19_05387 0.41 -0.3 64,251 - MPMX19_05387 0.41 -2.2 64,515 - +2.4 64,535 + +0.4 64,536 - -0.3 64,536 - +0.0 64,546 + -1.2 64,546 + -1.4 64,546 + -0.6 64,546 + -0.3 64,546 + +1.0 64,546 + +0.5 64,546 + -0.3 64,546 + -0.6 64,546 + -1.1 64,546 + -2.2 64,546 + -1.5 64,546 + -0.1 64,546 + -0.1 64,547 - -0.8 64,547 - -1.1 64,547 - -0.7 64,547 - -0.3 64,547 - +1.7 64,547 - -1.6 64,577 + -0.6 64,577 + -1.1 64,577 + -0.9 64,577 + +0.3 64,577 + -0.3 64,577 + +0.7 64,577 + +0.9 64,577 + -1.0 64,577 + -1.8 64,577 + +0.1 64,577 + -0.7 64,577 + -1.7 64,577 + +0.3 64,577 + +0.6 64,577 + -1.3 64,577 + -0.8 64,578 - -0.3 64,578 - -0.2 64,578 - -0.4 64,578 - -2.0 64,578 - +0.7 64,578 - -1.4 64,578 - +0.2 64,578 - +0.3 64,578 - -1.4 64,578 - +0.7 64,578 - -1.8 64,578 - -1.7 64,578 - +0.1 64,578 - -1.5 64,578 - +1.7 64,760 + MPMX19_05388 0.35 +0.2 64,760 + MPMX19_05388 0.35 -0.1 64,760 + MPMX19_05388 0.35 -0.8 64,760 + MPMX19_05388 0.35 +0.7 64,760 + MPMX19_05388 0.35 -2.0 64,760 + MPMX19_05388 0.35 +0.0 64,761 - MPMX19_05388 0.35 +0.4 64,761 - MPMX19_05388 0.35 +0.6 64,761 - MPMX19_05388 0.35 -1.1 64,761 - MPMX19_05388 0.35 -0.3 64,761 - MPMX19_05388 0.35 -1.1 64,761 - MPMX19_05388 0.35 -0.8 64,761 - MPMX19_05388 0.35 +0.7 64,905 + MPMX19_05388 0.69 +0.2 64,905 + MPMX19_05388 0.69 +0.0 64,905 + MPMX19_05388 0.69 +0.2 64,906 - MPMX19_05388 0.69 -0.3 64,906 - MPMX19_05388 0.69 -0.6 65,230 + MPMX19_05389 0.10 -1.8 65,231 - MPMX19_05389 0.10 -1.7 65,231 - MPMX19_05389 0.10 -1.0 65,231 - MPMX19_05389 0.10 -0.6 65,231 - MPMX19_05389 0.10 -0.1 65,491 + MPMX19_05389 0.28 -0.7 65,491 + MPMX19_05389 0.28 -1.0 65,492 - MPMX19_05389 0.28 -0.7 65,605 + MPMX19_05389 0.35 -1.9 65,605 + MPMX19_05389 0.35 +0.4 65,605 + MPMX19_05389 0.35 -0.8 65,605 + MPMX19_05389 0.35 -0.4 65,605 + MPMX19_05389 0.35 -1.1 65,605 + MPMX19_05389 0.35 -0.3 65,606 - MPMX19_05389 0.35 +0.2 65,606 - MPMX19_05389 0.35 -1.5 65,606 - MPMX19_05389 0.35 +0.2 65,606 - MPMX19_05389 0.35 +0.3 65,606 - MPMX19_05389 0.35 -1.1 65,606 - MPMX19_05389 0.35 -0.1 65,606 - MPMX19_05389 0.35 -0.6 65,606 - MPMX19_05389 0.35 +0.6
Or see this region's nucleotide sequence