Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05293 and MPMX19_05294 overlap by 4 nucleotides MPMX19_05294 and MPMX19_05295 are separated by 4 nucleotides MPMX19_05295 and MPMX19_05296 are separated by 19 nucleotides MPMX19_05296 and MPMX19_05297 are separated by 213 nucleotides
MPMX19_05293: MPMX19_05293 - hypothetical protein, at 828,238 to 829,122
_05293
MPMX19_05294: MPMX19_05294 - hypothetical protein, at 829,119 to 829,547
_05294
MPMX19_05295: MPMX19_05295 - hypothetical protein, at 829,552 to 829,863
_05295
MPMX19_05296: MPMX19_05296 - Hydrogenase 1 maturation protease, at 829,883 to 830,533
_05296
MPMX19_05297: MPMX19_05297 - hypothetical protein, at 830,747 to 832,042
_05297
Position (kb) 829
830 Strain fitness (log2 ratio) -2
-1
0
1 at 829.007 kb on + strand, within MPMX19_05293 at 829.007 kb on + strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.008 kb on - strand, within MPMX19_05293 at 829.037 kb on + strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.038 kb on - strand at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.174 kb on + strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.175 kb on - strand, within MPMX19_05294 at 829.465 kb on + strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.466 kb on - strand, within MPMX19_05294 at 829.720 kb on - strand, within MPMX19_05295 at 829.720 kb on - strand, within MPMX19_05295 at 829.720 kb on - strand, within MPMX19_05295 at 829.968 kb on + strand, within MPMX19_05296 at 829.968 kb on + strand, within MPMX19_05296 at 829.968 kb on + strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 829.969 kb on - strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.118 kb on + strand, within MPMX19_05296 at 830.119 kb on - strand, within MPMX19_05296 at 830.119 kb on - strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.180 kb on + strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.181 kb on - strand, within MPMX19_05296 at 830.301 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.358 kb on + strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.359 kb on - strand, within MPMX19_05296 at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.589 kb on + strand at 830.590 kb on - strand at 830.642 kb on + strand at 830.643 kb on - strand at 830.667 kb on - strand at 830.667 kb on - strand at 830.692 kb on - strand at 830.692 kb on - strand at 830.692 kb on - strand at 830.727 kb on + strand at 830.727 kb on + strand at 830.728 kb on - strand at 830.728 kb on - strand at 830.809 kb on + strand at 830.809 kb on + strand at 830.809 kb on + strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.810 kb on - strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.856 kb on + strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand at 830.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 829,007 + MPMX19_05293 0.87 -0.2 829,007 + MPMX19_05293 0.87 +0.6 829,008 - MPMX19_05293 0.87 -0.5 829,008 - MPMX19_05293 0.87 +0.3 829,037 + -0.2 829,038 - -1.0 829,038 - -1.6 829,038 - -1.3 829,038 - -0.4 829,038 - -0.6 829,038 - -1.0 829,038 - -0.1 829,038 - +0.1 829,174 + MPMX19_05294 0.13 -1.6 829,174 + MPMX19_05294 0.13 -1.4 829,174 + MPMX19_05294 0.13 -0.8 829,174 + MPMX19_05294 0.13 -1.0 829,174 + MPMX19_05294 0.13 -2.0 829,175 - MPMX19_05294 0.13 +1.2 829,175 - MPMX19_05294 0.13 -1.6 829,175 - MPMX19_05294 0.13 -0.7 829,465 + MPMX19_05294 0.81 +0.8 829,466 - MPMX19_05294 0.81 -1.1 829,466 - MPMX19_05294 0.81 -0.6 829,466 - MPMX19_05294 0.81 -0.7 829,466 - MPMX19_05294 0.81 -0.3 829,466 - MPMX19_05294 0.81 -0.7 829,720 - MPMX19_05295 0.54 -0.3 829,720 - MPMX19_05295 0.54 +0.6 829,720 - MPMX19_05295 0.54 +0.7 829,968 + MPMX19_05296 0.13 -0.1 829,968 + MPMX19_05296 0.13 -0.4 829,968 + MPMX19_05296 0.13 -0.4 829,969 - MPMX19_05296 0.13 -1.0 829,969 - MPMX19_05296 0.13 -0.4 829,969 - MPMX19_05296 0.13 -0.3 829,969 - MPMX19_05296 0.13 -0.7 829,969 - MPMX19_05296 0.13 -1.0 830,118 + MPMX19_05296 0.36 -0.9 830,118 + MPMX19_05296 0.36 -1.2 830,118 + MPMX19_05296 0.36 -1.6 830,119 - MPMX19_05296 0.36 -1.6 830,119 - MPMX19_05296 0.36 +0.1 830,180 + MPMX19_05296 0.46 +1.0 830,180 + MPMX19_05296 0.46 +0.3 830,180 + MPMX19_05296 0.46 -0.7 830,181 - MPMX19_05296 0.46 -1.6 830,181 - MPMX19_05296 0.46 -2.0 830,181 - MPMX19_05296 0.46 -0.9 830,181 - MPMX19_05296 0.46 -2.5 830,301 + MPMX19_05296 0.64 -0.4 830,358 + MPMX19_05296 0.73 -1.3 830,358 + MPMX19_05296 0.73 -1.0 830,358 + MPMX19_05296 0.73 +0.0 830,358 + MPMX19_05296 0.73 -0.2 830,358 + MPMX19_05296 0.73 +0.3 830,358 + MPMX19_05296 0.73 -1.4 830,359 - MPMX19_05296 0.73 +0.1 830,359 - MPMX19_05296 0.73 -0.2 830,359 - MPMX19_05296 0.73 +0.2 830,359 - MPMX19_05296 0.73 -0.6 830,359 - MPMX19_05296 0.73 -0.3 830,359 - MPMX19_05296 0.73 +1.4 830,359 - MPMX19_05296 0.73 +0.3 830,359 - MPMX19_05296 0.73 -0.9 830,589 + -1.0 830,589 + +0.7 830,589 + -0.7 830,589 + -1.0 830,589 + -1.1 830,590 - -1.2 830,642 + -1.0 830,643 - +0.3 830,667 - -0.7 830,667 - +0.3 830,692 - +1.4 830,692 - +0.9 830,692 - -0.9 830,727 + -0.5 830,727 + -0.4 830,728 - -0.2 830,728 - +0.4 830,809 + -0.2 830,809 + -0.4 830,809 + -0.8 830,810 - -0.4 830,810 - -1.6 830,810 - +0.8 830,810 - -0.2 830,810 - -1.2 830,810 - -0.5 830,856 + -0.2 830,856 + -1.7 830,856 + +0.8 830,856 + -1.1 830,856 + -1.7 830,856 + -1.1 830,856 + -1.1 830,856 + +0.0 830,856 + -1.1 830,856 + -0.2 830,857 - +0.3 830,857 - -0.7 830,857 - -2.0 830,857 - -2.7 830,857 - -0.1 830,857 - +0.3 830,857 - -1.0
Or see this region's nucleotide sequence