Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05280

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05279 and MPMX19_05280 are separated by 311 nucleotidesMPMX19_05280 and MPMX19_05281 are separated by 30 nucleotidesMPMX19_05281 and MPMX19_05282 are separated by 17 nucleotides MPMX19_05279: MPMX19_05279 - Copper-containing nitrite reductase, at 812,278 to 813,345 _05279 MPMX19_05280: MPMX19_05280 - hypothetical protein, at 813,657 to 814,676 _05280 MPMX19_05281: MPMX19_05281 - hypothetical protein, at 814,707 to 815,273 _05281 MPMX19_05282: MPMX19_05282 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 815,291 to 816,349 _05282 Position (kb) 813 814 815Strain fitness (log2 ratio) -2 -1 0 1at 812.682 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.743 kb on + strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.744 kb on - strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.749 kb on + strand, within MPMX19_05279at 812.750 kb on - strand, within MPMX19_05279at 812.750 kb on - strand, within MPMX19_05279at 812.750 kb on - strand, within MPMX19_05279at 812.750 kb on - strand, within MPMX19_05279at 812.750 kb on - strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.797 kb on + strand, within MPMX19_05279at 812.798 kb on - strand, within MPMX19_05279at 812.798 kb on - strand, within MPMX19_05279at 812.798 kb on - strand, within MPMX19_05279at 812.798 kb on - strand, within MPMX19_05279at 812.798 kb on - strand, within MPMX19_05279at 812.798 kb on - strand, within MPMX19_05279at 812.854 kb on + strand, within MPMX19_05279at 812.854 kb on + strand, within MPMX19_05279at 812.875 kb on + strand, within MPMX19_05279at 812.876 kb on - strand, within MPMX19_05279at 812.876 kb on - strand, within MPMX19_05279at 812.917 kb on + strand, within MPMX19_05279at 812.917 kb on + strand, within MPMX19_05279at 812.917 kb on + strand, within MPMX19_05279at 812.917 kb on + strand, within MPMX19_05279at 812.918 kb on - strand, within MPMX19_05279at 812.918 kb on - strand, within MPMX19_05279at 812.918 kb on - strand, within MPMX19_05279at 812.918 kb on - strand, within MPMX19_05279at 812.918 kb on - strand, within MPMX19_05279at 812.918 kb on - strand, within MPMX19_05279at 812.947 kb on + strand, within MPMX19_05279at 812.948 kb on - strand, within MPMX19_05279at 812.948 kb on - strand, within MPMX19_05279at 812.948 kb on - strand, within MPMX19_05279at 812.948 kb on - strand, within MPMX19_05279at 813.097 kb on + strand, within MPMX19_05279at 813.097 kb on + strand, within MPMX19_05279at 813.097 kb on + strand, within MPMX19_05279at 813.097 kb on + strand, within MPMX19_05279at 813.098 kb on - strand, within MPMX19_05279at 813.098 kb on - strand, within MPMX19_05279at 813.098 kb on - strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.205 kb on + strand, within MPMX19_05279at 813.206 kb on - strand, within MPMX19_05279at 813.206 kb on - strand, within MPMX19_05279at 813.206 kb on - strand, within MPMX19_05279at 813.206 kb on - strand, within MPMX19_05279at 813.206 kb on - strand, within MPMX19_05279at 813.206 kb on - strand, within MPMX19_05279at 813.206 kb on - strand, within MPMX19_05279at 813.326 kb on + strandat 813.353 kb on + strandat 813.353 kb on + strandat 813.354 kb on - strandat 813.400 kb on - strandat 813.483 kb on - strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.599 kb on + strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.600 kb on - strandat 813.601 kb on + strandat 813.601 kb on + strandat 813.601 kb on + strandat 813.601 kb on + strandat 813.601 kb on + strandat 813.602 kb on - strandat 813.602 kb on - strandat 813.602 kb on - strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.603 kb on + strandat 813.604 kb on - strandat 813.604 kb on - strandat 813.604 kb on - strandat 813.658 kb on + strandat 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.823 kb on + strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.824 kb on - strand, within MPMX19_05280at 813.896 kb on - strand, within MPMX19_05280at 813.896 kb on - strand, within MPMX19_05280at 813.896 kb on - strand, within MPMX19_05280at 814.088 kb on + strand, within MPMX19_05280at 814.088 kb on + strand, within MPMX19_05280at 814.198 kb on + strand, within MPMX19_05280at 814.198 kb on + strand, within MPMX19_05280at 814.199 kb on - strand, within MPMX19_05280at 814.199 kb on - strand, within MPMX19_05280at 814.199 kb on - strand, within MPMX19_05280at 814.303 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.318 kb on + strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.319 kb on - strand, within MPMX19_05280at 814.579 kb on + strandat 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.912 kb on + strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 814.913 kb on - strand, within MPMX19_05281at 815.140 kb on + strand, within MPMX19_05281at 815.141 kb on - strand, within MPMX19_05281

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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812,682 + MPMX19_05279 0.38 -1.2
812,743 + MPMX19_05279 0.44 +0.8
812,743 + MPMX19_05279 0.44 -0.6
812,743 + MPMX19_05279 0.44 +0.6
812,743 + MPMX19_05279 0.44 -1.2
812,743 + MPMX19_05279 0.44 -0.8
812,743 + MPMX19_05279 0.44 -1.0
812,743 + MPMX19_05279 0.44 -1.4
812,743 + MPMX19_05279 0.44 -1.2
812,743 + MPMX19_05279 0.44 -1.9
812,743 + MPMX19_05279 0.44 +0.5
812,743 + MPMX19_05279 0.44 -1.7
812,744 - MPMX19_05279 0.44 -0.4
812,744 - MPMX19_05279 0.44 -1.1
812,744 - MPMX19_05279 0.44 +0.7
812,744 - MPMX19_05279 0.44 -0.5
812,744 - MPMX19_05279 0.44 +0.2
812,744 - MPMX19_05279 0.44 +0.2
812,744 - MPMX19_05279 0.44 +1.0
812,744 - MPMX19_05279 0.44 -0.3
812,744 - MPMX19_05279 0.44 +0.0
812,744 - MPMX19_05279 0.44 +0.6
812,744 - MPMX19_05279 0.44 +0.2
812,744 - MPMX19_05279 0.44 -1.7
812,749 + MPMX19_05279 0.44 -0.4
812,749 + MPMX19_05279 0.44 -0.3
812,749 + MPMX19_05279 0.44 -0.8
812,749 + MPMX19_05279 0.44 +1.0
812,749 + MPMX19_05279 0.44 -1.2
812,749 + MPMX19_05279 0.44 -1.4
812,749 + MPMX19_05279 0.44 -0.5
812,749 + MPMX19_05279 0.44 -0.5
812,749 + MPMX19_05279 0.44 -2.2
812,749 + MPMX19_05279 0.44 +0.6
812,749 + MPMX19_05279 0.44 -1.0
812,750 - MPMX19_05279 0.44 +1.1
812,750 - MPMX19_05279 0.44 +0.4
812,750 - MPMX19_05279 0.44 +1.4
812,750 - MPMX19_05279 0.44 -0.4
812,750 - MPMX19_05279 0.44 -0.7
812,797 + MPMX19_05279 0.49 -1.0
812,797 + MPMX19_05279 0.49 +0.0
812,797 + MPMX19_05279 0.49 -0.7
812,797 + MPMX19_05279 0.49 -0.6
812,797 + MPMX19_05279 0.49 +0.1
812,797 + MPMX19_05279 0.49 -1.0
812,797 + MPMX19_05279 0.49 -0.9
812,797 + MPMX19_05279 0.49 -0.7
812,797 + MPMX19_05279 0.49 -1.0
812,798 - MPMX19_05279 0.49 +0.0
812,798 - MPMX19_05279 0.49 -0.6
812,798 - MPMX19_05279 0.49 +0.5
812,798 - MPMX19_05279 0.49 +0.1
812,798 - MPMX19_05279 0.49 -1.6
812,798 - MPMX19_05279 0.49 -0.6
812,854 + MPMX19_05279 0.54 -1.7
812,854 + MPMX19_05279 0.54 -0.2
812,875 + MPMX19_05279 0.56 -0.7
812,876 - MPMX19_05279 0.56 +0.8
812,876 - MPMX19_05279 0.56 +0.3
812,917 + MPMX19_05279 0.60 +0.2
812,917 + MPMX19_05279 0.60 -0.6
812,917 + MPMX19_05279 0.60 +0.1
812,917 + MPMX19_05279 0.60 +0.7
812,918 - MPMX19_05279 0.60 +0.4
812,918 - MPMX19_05279 0.60 -0.9
812,918 - MPMX19_05279 0.60 +0.0
812,918 - MPMX19_05279 0.60 -1.2
812,918 - MPMX19_05279 0.60 -0.7
812,918 - MPMX19_05279 0.60 -1.3
812,947 + MPMX19_05279 0.63 -0.7
812,948 - MPMX19_05279 0.63 -1.8
812,948 - MPMX19_05279 0.63 -1.2
812,948 - MPMX19_05279 0.63 +0.0
812,948 - MPMX19_05279 0.63 -2.0
813,097 + MPMX19_05279 0.77 -0.1
813,097 + MPMX19_05279 0.77 -0.5
813,097 + MPMX19_05279 0.77 -2.0
813,097 + MPMX19_05279 0.77 -2.1
813,098 - MPMX19_05279 0.77 -1.5
813,098 - MPMX19_05279 0.77 +0.6
813,098 - MPMX19_05279 0.77 -1.5
813,205 + MPMX19_05279 0.87 -1.6
813,205 + MPMX19_05279 0.87 -1.6
813,205 + MPMX19_05279 0.87 +0.6
813,205 + MPMX19_05279 0.87 +0.6
813,205 + MPMX19_05279 0.87 -0.4
813,205 + MPMX19_05279 0.87 -0.3
813,205 + MPMX19_05279 0.87 -1.8
813,205 + MPMX19_05279 0.87 -0.4
813,205 + MPMX19_05279 0.87 -0.6
813,205 + MPMX19_05279 0.87 +0.3
813,205 + MPMX19_05279 0.87 +0.4
813,205 + MPMX19_05279 0.87 -0.1
813,205 + MPMX19_05279 0.87 -0.1
813,206 - MPMX19_05279 0.87 -1.8
813,206 - MPMX19_05279 0.87 -0.4
813,206 - MPMX19_05279 0.87 -0.1
813,206 - MPMX19_05279 0.87 -1.3
813,206 - MPMX19_05279 0.87 -0.4
813,206 - MPMX19_05279 0.87 -0.2
813,206 - MPMX19_05279 0.87 +0.6
813,326 + -1.7
813,353 + +0.3
813,353 + -1.8
813,354 - +1.0
813,400 - +0.3
813,483 - -0.6
813,599 + -0.1
813,599 + -0.8
813,599 + -1.2
813,599 + -1.0
813,599 + -1.0
813,599 + +1.1
813,599 + +0.9
813,599 + -1.2
813,599 + +0.4
813,599 + -1.9
813,599 + -0.8
813,599 + +0.7
813,599 + +0.4
813,599 + -1.0
813,600 - -0.7
813,600 - -0.9
813,600 - +0.2
813,600 - +0.4
813,600 - +0.8
813,600 - -0.6
813,600 - +0.0
813,600 - +0.3
813,600 - -1.5
813,600 - +0.6
813,600 - +0.1
813,600 - -0.9
813,600 - -0.6
813,600 - +0.7
813,600 - -0.9
813,600 - +0.4
813,600 - -0.9
813,600 - -1.3
813,600 - -0.4
813,600 - -0.6
813,600 - -0.5
813,601 + +0.0
813,601 + -0.2
813,601 + -1.0
813,601 + -1.0
813,601 + -1.2
813,602 - +0.1
813,602 - -1.6
813,602 - -0.7
813,603 + -0.1
813,603 + -0.5
813,603 + +0.0
813,603 + -0.7
813,603 + -0.1
813,603 + -0.3
813,603 + +0.3
813,603 + -1.4
813,603 + -0.2
813,603 + -0.1
813,604 - -1.0
813,604 - -2.4
813,604 - -1.6
813,658 + -0.6
813,823 + MPMX19_05280 0.16 -1.2
813,823 + MPMX19_05280 0.16 +0.3
813,823 + MPMX19_05280 0.16 -1.0
813,823 + MPMX19_05280 0.16 -1.6
813,823 + MPMX19_05280 0.16 +0.0
813,823 + MPMX19_05280 0.16 -0.6
813,823 + MPMX19_05280 0.16 +0.4
813,824 - MPMX19_05280 0.16 +1.6
813,824 - MPMX19_05280 0.16 +1.3
813,824 - MPMX19_05280 0.16 +1.1
813,824 - MPMX19_05280 0.16 -0.4
813,824 - MPMX19_05280 0.16 -0.2
813,824 - MPMX19_05280 0.16 +1.2
813,896 - MPMX19_05280 0.23 -2.6
813,896 - MPMX19_05280 0.23 -1.5
813,896 - MPMX19_05280 0.23 -0.3
814,088 + MPMX19_05280 0.42 +0.0
814,088 + MPMX19_05280 0.42 -0.7
814,198 + MPMX19_05280 0.53 +0.8
814,198 + MPMX19_05280 0.53 -0.6
814,199 - MPMX19_05280 0.53 +0.3
814,199 - MPMX19_05280 0.53 -1.9
814,199 - MPMX19_05280 0.53 +0.8
814,303 + MPMX19_05280 0.63 +0.3
814,318 + MPMX19_05280 0.65 +0.3
814,318 + MPMX19_05280 0.65 -0.4
814,318 + MPMX19_05280 0.65 -1.0
814,318 + MPMX19_05280 0.65 +1.6
814,318 + MPMX19_05280 0.65 +0.0
814,318 + MPMX19_05280 0.65 +0.3
814,318 + MPMX19_05280 0.65 +0.1
814,318 + MPMX19_05280 0.65 +1.3
814,318 + MPMX19_05280 0.65 +1.3
814,318 + MPMX19_05280 0.65 +0.6
814,318 + MPMX19_05280 0.65 +0.0
814,319 - MPMX19_05280 0.65 +0.6
814,319 - MPMX19_05280 0.65 +1.0
814,319 - MPMX19_05280 0.65 +0.4
814,319 - MPMX19_05280 0.65 -1.6
814,319 - MPMX19_05280 0.65 -0.4
814,319 - MPMX19_05280 0.65 +0.3
814,319 - MPMX19_05280 0.65 +0.7
814,579 + +0.8
814,912 + MPMX19_05281 0.36 +0.8
814,912 + MPMX19_05281 0.36 -0.7
814,912 + MPMX19_05281 0.36 -1.4
814,912 + MPMX19_05281 0.36 -0.3
814,912 + MPMX19_05281 0.36 -2.2
814,912 + MPMX19_05281 0.36 -1.6
814,912 + MPMX19_05281 0.36 -1.4
814,912 + MPMX19_05281 0.36 -0.5
814,913 - MPMX19_05281 0.36 +0.3
814,913 - MPMX19_05281 0.36 -1.5
814,913 - MPMX19_05281 0.36 +0.6
814,913 - MPMX19_05281 0.36 +0.1
814,913 - MPMX19_05281 0.36 -2.4
814,913 - MPMX19_05281 0.36 +0.2
814,913 - MPMX19_05281 0.36 -1.9
814,913 - MPMX19_05281 0.36 -1.0
814,913 - MPMX19_05281 0.36 -0.6
814,913 - MPMX19_05281 0.36 +0.1
814,913 - MPMX19_05281 0.36 -0.3
814,913 - MPMX19_05281 0.36 -0.5
815,140 + MPMX19_05281 0.76 -0.2
815,141 - MPMX19_05281 0.77 +1.0

Or see this region's nucleotide sequence