Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05181

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05179 and MPMX19_05180 are separated by 26 nucleotidesMPMX19_05180 and MPMX19_05181 are separated by 6 nucleotidesMPMX19_05181 and MPMX19_05182 are separated by 130 nucleotides MPMX19_05179: MPMX19_05179 - Putative aliphatic sulfonates-binding protein, at 682,516 to 683,529 _05179 MPMX19_05180: MPMX19_05180 - Vitamin B12 import ATP-binding protein BtuD, at 683,556 to 684,461 _05180 MPMX19_05181: MPMX19_05181 - Putative aliphatic sulfonates transport permease protein SsuC, at 684,468 to 685,295 _05181 MPMX19_05182: MPMX19_05182 - HTH-type transcriptional regulator HdfR, at 685,426 to 686,331 _05182 Position (kb) 684 685 686Strain fitness (log2 ratio) -3 -2 -1 0 1at 683.517 kb on + strandat 684.479 kb on + strandat 684.479 kb on + strandat 684.829 kb on + strand, within MPMX19_05181at 684.830 kb on - strand, within MPMX19_05181at 684.830 kb on - strand, within MPMX19_05181at 684.830 kb on - strand, within MPMX19_05181at 684.830 kb on - strand, within MPMX19_05181at 686.112 kb on - strand, within MPMX19_05182at 686.112 kb on - strand, within MPMX19_05182

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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683,517 + +0.8
684,479 + -0.3
684,479 + -0.3
684,829 + MPMX19_05181 0.44 -1.7
684,830 - MPMX19_05181 0.44 -0.7
684,830 - MPMX19_05181 0.44 +0.5
684,830 - MPMX19_05181 0.44 -3.1
684,830 - MPMX19_05181 0.44 +0.4
686,112 - MPMX19_05182 0.76 +0.4
686,112 - MPMX19_05182 0.76 -2.4

Or see this region's nucleotide sequence