Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04940 and MPMX19_04941 overlap by 4 nucleotides MPMX19_04941 and MPMX19_04942 are separated by 99 nucleotides MPMX19_04942 and MPMX19_04943 are separated by 4 nucleotides
MPMX19_04940: MPMX19_04940 - Histidine ammonia-lyase, at 403,302 to 404,840
_04940
MPMX19_04941: MPMX19_04941 - hypothetical protein, at 404,837 to 405,652
_04941
MPMX19_04942: MPMX19_04942 - hypothetical protein, at 405,752 to 406,402
_04942
MPMX19_04943: MPMX19_04943 - hypothetical protein, at 406,407 to 407,639
_04943
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1 at 404.148 kb on + strand, within MPMX19_04940 at 404.148 kb on + strand, within MPMX19_04940 at 404.149 kb on - strand, within MPMX19_04940 at 404.149 kb on - strand, within MPMX19_04940 at 404.149 kb on - strand, within MPMX19_04940 at 404.627 kb on + strand, within MPMX19_04940 at 404.628 kb on - strand, within MPMX19_04940 at 404.628 kb on - strand, within MPMX19_04940 at 404.629 kb on + strand, within MPMX19_04940 at 404.630 kb on - strand, within MPMX19_04940 at 404.630 kb on - strand, within MPMX19_04940 at 404.630 kb on - strand, within MPMX19_04940 at 404.630 kb on - strand, within MPMX19_04940 at 404.733 kb on + strand at 404.733 kb on + strand at 404.734 kb on - strand at 404.748 kb on + strand at 404.749 kb on - strand at 404.749 kb on - strand at 404.990 kb on + strand, within MPMX19_04941 at 404.990 kb on + strand, within MPMX19_04941 at 404.990 kb on + strand, within MPMX19_04941 at 404.990 kb on + strand, within MPMX19_04941 at 404.991 kb on - strand, within MPMX19_04941 at 404.991 kb on - strand, within MPMX19_04941 at 404.991 kb on - strand, within MPMX19_04941 at 405.035 kb on + strand, within MPMX19_04941 at 405.035 kb on + strand, within MPMX19_04941 at 405.036 kb on - strand, within MPMX19_04941 at 405.044 kb on + strand, within MPMX19_04941 at 405.045 kb on - strand, within MPMX19_04941 at 405.045 kb on - strand, within MPMX19_04941 at 405.045 kb on - strand, within MPMX19_04941 at 405.045 kb on - strand, within MPMX19_04941 at 405.045 kb on - strand, within MPMX19_04941 at 405.045 kb on - strand, within MPMX19_04941 at 405.086 kb on + strand, within MPMX19_04941 at 405.200 kb on + strand, within MPMX19_04941 at 405.200 kb on + strand, within MPMX19_04941 at 405.201 kb on - strand, within MPMX19_04941 at 405.213 kb on - strand, within MPMX19_04941 at 405.213 kb on - strand, within MPMX19_04941 at 405.275 kb on + strand, within MPMX19_04941 at 405.275 kb on + strand, within MPMX19_04941 at 405.275 kb on + strand, within MPMX19_04941 at 405.275 kb on + strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.276 kb on - strand, within MPMX19_04941 at 405.480 kb on - strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.653 kb on + strand at 405.653 kb on + strand at 405.653 kb on + strand at 405.654 kb on - strand at 405.654 kb on - strand at 405.833 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.972 kb on + strand, within MPMX19_04942 at 406.014 kb on + strand, within MPMX19_04942 at 406.014 kb on + strand, within MPMX19_04942 at 406.014 kb on + strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.115 kb on + strand, within MPMX19_04942 at 406.115 kb on + strand, within MPMX19_04942 at 406.116 kb on - strand, within MPMX19_04942 at 406.275 kb on - strand, within MPMX19_04942 at 406.408 kb on + strand at 406.408 kb on + strand at 406.409 kb on - strand at 406.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 404,148 + MPMX19_04940 0.55 -0.6 404,148 + MPMX19_04940 0.55 -1.2 404,149 - MPMX19_04940 0.55 -0.8 404,149 - MPMX19_04940 0.55 -1.1 404,149 - MPMX19_04940 0.55 +1.4 404,627 + MPMX19_04940 0.86 -0.2 404,628 - MPMX19_04940 0.86 -0.4 404,628 - MPMX19_04940 0.86 +0.1 404,629 + MPMX19_04940 0.86 -1.2 404,630 - MPMX19_04940 0.86 -1.8 404,630 - MPMX19_04940 0.86 +0.5 404,630 - MPMX19_04940 0.86 -0.0 404,630 - MPMX19_04940 0.86 -0.8 404,733 + +0.3 404,733 + -0.1 404,734 - -1.6 404,748 + +0.6 404,749 - +0.4 404,749 - -1.7 404,990 + MPMX19_04941 0.19 -1.0 404,990 + MPMX19_04941 0.19 -1.3 404,990 + MPMX19_04941 0.19 -1.5 404,990 + MPMX19_04941 0.19 -1.1 404,991 - MPMX19_04941 0.19 +0.3 404,991 - MPMX19_04941 0.19 -1.9 404,991 - MPMX19_04941 0.19 -0.6 405,035 + MPMX19_04941 0.24 -1.3 405,035 + MPMX19_04941 0.24 -1.1 405,036 - MPMX19_04941 0.24 -2.1 405,044 + MPMX19_04941 0.25 -0.5 405,045 - MPMX19_04941 0.25 -2.2 405,045 - MPMX19_04941 0.25 -2.0 405,045 - MPMX19_04941 0.25 +0.5 405,045 - MPMX19_04941 0.25 -1.1 405,045 - MPMX19_04941 0.25 -0.5 405,045 - MPMX19_04941 0.25 -0.9 405,086 + MPMX19_04941 0.31 -0.9 405,200 + MPMX19_04941 0.44 -1.1 405,200 + MPMX19_04941 0.44 -1.6 405,201 - MPMX19_04941 0.45 -0.8 405,213 - MPMX19_04941 0.46 -0.1 405,213 - MPMX19_04941 0.46 -0.6 405,275 + MPMX19_04941 0.54 -2.2 405,275 + MPMX19_04941 0.54 -1.5 405,275 + MPMX19_04941 0.54 +0.7 405,275 + MPMX19_04941 0.54 +0.4 405,276 - MPMX19_04941 0.54 -1.3 405,276 - MPMX19_04941 0.54 -0.8 405,276 - MPMX19_04941 0.54 -0.5 405,276 - MPMX19_04941 0.54 -1.1 405,276 - MPMX19_04941 0.54 -0.4 405,276 - MPMX19_04941 0.54 -1.3 405,276 - MPMX19_04941 0.54 +0.5 405,276 - MPMX19_04941 0.54 -1.9 405,276 - MPMX19_04941 0.54 +0.1 405,276 - MPMX19_04941 0.54 -1.2 405,276 - MPMX19_04941 0.54 -1.0 405,276 - MPMX19_04941 0.54 -0.5 405,276 - MPMX19_04941 0.54 -1.2 405,276 - MPMX19_04941 0.54 -0.5 405,276 - MPMX19_04941 0.54 -1.3 405,276 - MPMX19_04941 0.54 -1.9 405,276 - MPMX19_04941 0.54 -1.5 405,480 - MPMX19_04941 0.79 +0.3 405,536 + MPMX19_04941 0.86 -1.1 405,536 + MPMX19_04941 0.86 -1.9 405,536 + MPMX19_04941 0.86 -2.5 405,536 + MPMX19_04941 0.86 -0.1 405,537 - MPMX19_04941 0.86 -1.3 405,537 - MPMX19_04941 0.86 -1.0 405,537 - MPMX19_04941 0.86 -1.8 405,537 - MPMX19_04941 0.86 +0.7 405,653 + -2.2 405,653 + -0.0 405,653 + -1.0 405,654 - -1.0 405,654 - +0.1 405,833 + MPMX19_04942 0.12 -0.1 405,965 + MPMX19_04942 0.33 +1.1 405,965 + MPMX19_04942 0.33 -2.0 405,965 + MPMX19_04942 0.33 -1.8 405,965 + MPMX19_04942 0.33 -1.3 405,965 + MPMX19_04942 0.33 -1.4 405,965 + MPMX19_04942 0.33 -0.9 405,965 + MPMX19_04942 0.33 +0.7 405,965 + MPMX19_04942 0.33 -0.9 405,965 + MPMX19_04942 0.33 +0.3 405,965 + MPMX19_04942 0.33 -0.4 405,966 - MPMX19_04942 0.33 +0.6 405,966 - MPMX19_04942 0.33 -0.6 405,966 - MPMX19_04942 0.33 +0.7 405,966 - MPMX19_04942 0.33 -1.1 405,966 - MPMX19_04942 0.33 -1.4 405,966 - MPMX19_04942 0.33 +0.2 405,966 - MPMX19_04942 0.33 -0.4 405,966 - MPMX19_04942 0.33 -2.1 405,966 - MPMX19_04942 0.33 -2.2 405,972 + MPMX19_04942 0.34 -0.4 406,014 + MPMX19_04942 0.40 -1.6 406,014 + MPMX19_04942 0.40 -0.5 406,014 + MPMX19_04942 0.40 -0.6 406,015 - MPMX19_04942 0.40 -0.7 406,015 - MPMX19_04942 0.40 -1.0 406,015 - MPMX19_04942 0.40 -0.2 406,015 - MPMX19_04942 0.40 -0.6 406,044 + MPMX19_04942 0.45 -0.3 406,044 + MPMX19_04942 0.45 -0.3 406,044 + MPMX19_04942 0.45 -1.1 406,044 + MPMX19_04942 0.45 -0.4 406,044 + MPMX19_04942 0.45 -1.6 406,045 - MPMX19_04942 0.45 -0.0 406,045 - MPMX19_04942 0.45 -2.2 406,045 - MPMX19_04942 0.45 -0.7 406,045 - MPMX19_04942 0.45 -1.6 406,045 - MPMX19_04942 0.45 -0.9 406,115 + MPMX19_04942 0.56 -0.4 406,115 + MPMX19_04942 0.56 -1.1 406,116 - MPMX19_04942 0.56 -0.7 406,275 - MPMX19_04942 0.80 -0.5 406,408 + -0.7 406,408 + -2.2 406,409 - -0.3 406,409 - -0.3
Or see this region's nucleotide sequence