Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04820 and MPMX19_04821 are separated by 139 nucleotides MPMX19_04821 and MPMX19_04822 are separated by 287 nucleotides MPMX19_04822 and MPMX19_04823 are separated by 12 nucleotides
MPMX19_04820: MPMX19_04820 - Nucleoid occlusion protein, at 224,422 to 225,243
_04820
MPMX19_04821: MPMX19_04821 - hypothetical protein, at 225,383 to 227,533
_04821
MPMX19_04822: MPMX19_04822 - Ornithine lipid N-methyltransferase, at 227,821 to 228,396
_04822
MPMX19_04823: MPMX19_04823 - hypothetical protein, at 228,409 to 229,731
_04823
Position (kb) 225
226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.507 kb on + strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.508 kb on - strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.753 kb on + strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.754 kb on - strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.852 kb on + strand, within MPMX19_04820 at 224.853 kb on - strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.972 kb on + strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 224.973 kb on - strand, within MPMX19_04820 at 225.080 kb on + strand, within MPMX19_04820 at 225.081 kb on - strand, within MPMX19_04820 at 226.689 kb on + strand, within MPMX19_04821 at 226.689 kb on + strand, within MPMX19_04821 at 226.689 kb on + strand, within MPMX19_04821 at 226.689 kb on + strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.690 kb on - strand, within MPMX19_04821 at 226.765 kb on + strand, within MPMX19_04821 at 226.765 kb on + strand, within MPMX19_04821 at 226.766 kb on - strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.929 kb on + strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 226.930 kb on - strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.052 kb on + strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.053 kb on - strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.154 kb on + strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.155 kb on - strand, within MPMX19_04821 at 227.187 kb on + strand, within MPMX19_04821 at 227.187 kb on + strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.188 kb on - strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.223 kb on + strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.224 kb on - strand, within MPMX19_04821 at 227.358 kb on + strand at 227.358 kb on + strand at 227.358 kb on + strand at 227.359 kb on - strand at 227.445 kb on + strand at 227.445 kb on + strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.527 kb on + strand at 227.527 kb on + strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.528 kb on - strand at 227.551 kb on - strand at 227.551 kb on - strand at 227.551 kb on - strand at 227.760 kb on + strand at 227.760 kb on + strand at 227.760 kb on + strand at 227.761 kb on - strand at 227.764 kb on - strand at 227.774 kb on + strand at 227.888 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.271 kb on + strand, within MPMX19_04822 at 228.272 kb on + strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.272 kb on - strand, within MPMX19_04822 at 228.420 kb on + strand at 228.420 kb on + strand at 228.421 kb on - strand at 228.421 kb on - strand at 228.421 kb on - strand at 228.425 kb on + strand at 228.425 kb on + strand at 228.426 kb on - strand at 228.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 224,507 + MPMX19_04820 0.10 -0.3 224,507 + MPMX19_04820 0.10 -0.4 224,507 + MPMX19_04820 0.10 -0.3 224,507 + MPMX19_04820 0.10 +0.5 224,507 + MPMX19_04820 0.10 +0.9 224,508 - MPMX19_04820 0.10 -0.6 224,508 - MPMX19_04820 0.10 -1.7 224,508 - MPMX19_04820 0.10 +0.2 224,508 - MPMX19_04820 0.10 +0.1 224,508 - MPMX19_04820 0.10 +0.7 224,508 - MPMX19_04820 0.10 -0.5 224,508 - MPMX19_04820 0.10 -0.7 224,508 - MPMX19_04820 0.10 -2.5 224,508 - MPMX19_04820 0.10 -0.2 224,508 - MPMX19_04820 0.10 +0.1 224,508 - MPMX19_04820 0.10 -0.4 224,753 + MPMX19_04820 0.40 +0.9 224,753 + MPMX19_04820 0.40 +1.1 224,753 + MPMX19_04820 0.40 -1.7 224,753 + MPMX19_04820 0.40 -1.0 224,753 + MPMX19_04820 0.40 -0.2 224,754 - MPMX19_04820 0.40 -0.1 224,754 - MPMX19_04820 0.40 +0.2 224,754 - MPMX19_04820 0.40 -1.4 224,852 + MPMX19_04820 0.52 -0.6 224,852 + MPMX19_04820 0.52 +0.2 224,852 + MPMX19_04820 0.52 -0.1 224,853 - MPMX19_04820 0.52 +1.0 224,972 + MPMX19_04820 0.67 +1.4 224,972 + MPMX19_04820 0.67 -0.2 224,972 + MPMX19_04820 0.67 -0.6 224,972 + MPMX19_04820 0.67 -1.1 224,972 + MPMX19_04820 0.67 -0.1 224,972 + MPMX19_04820 0.67 +0.4 224,972 + MPMX19_04820 0.67 +0.9 224,972 + MPMX19_04820 0.67 +0.3 224,972 + MPMX19_04820 0.67 -0.8 224,972 + MPMX19_04820 0.67 -0.3 224,973 - MPMX19_04820 0.67 +1.8 224,973 - MPMX19_04820 0.67 -0.6 224,973 - MPMX19_04820 0.67 -0.2 224,973 - MPMX19_04820 0.67 -0.3 224,973 - MPMX19_04820 0.67 -0.3 224,973 - MPMX19_04820 0.67 -1.0 225,080 + MPMX19_04820 0.80 +0.2 225,081 - MPMX19_04820 0.80 -0.9 226,689 + MPMX19_04821 0.61 +0.3 226,689 + MPMX19_04821 0.61 -1.5 226,689 + MPMX19_04821 0.61 -0.5 226,689 + MPMX19_04821 0.61 -1.1 226,690 - MPMX19_04821 0.61 -0.6 226,690 - MPMX19_04821 0.61 -1.5 226,690 - MPMX19_04821 0.61 -0.1 226,690 - MPMX19_04821 0.61 +0.5 226,765 + MPMX19_04821 0.64 +0.2 226,765 + MPMX19_04821 0.64 -1.0 226,766 - MPMX19_04821 0.64 +0.9 226,929 + MPMX19_04821 0.72 +0.2 226,929 + MPMX19_04821 0.72 -0.4 226,929 + MPMX19_04821 0.72 -0.5 226,929 + MPMX19_04821 0.72 -2.3 226,929 + MPMX19_04821 0.72 -0.2 226,929 + MPMX19_04821 0.72 -1.6 226,929 + MPMX19_04821 0.72 -1.3 226,929 + MPMX19_04821 0.72 -0.3 226,930 - MPMX19_04821 0.72 -0.8 226,930 - MPMX19_04821 0.72 -2.0 226,930 - MPMX19_04821 0.72 -0.3 226,930 - MPMX19_04821 0.72 -0.5 226,930 - MPMX19_04821 0.72 -1.3 226,930 - MPMX19_04821 0.72 -0.9 226,930 - MPMX19_04821 0.72 -0.3 226,930 - MPMX19_04821 0.72 -1.3 226,930 - MPMX19_04821 0.72 -0.2 227,052 + MPMX19_04821 0.78 -1.6 227,052 + MPMX19_04821 0.78 -0.3 227,052 + MPMX19_04821 0.78 +0.3 227,052 + MPMX19_04821 0.78 -0.4 227,052 + MPMX19_04821 0.78 -0.2 227,052 + MPMX19_04821 0.78 -1.1 227,053 - MPMX19_04821 0.78 -0.3 227,053 - MPMX19_04821 0.78 +0.8 227,053 - MPMX19_04821 0.78 +0.3 227,053 - MPMX19_04821 0.78 -2.8 227,053 - MPMX19_04821 0.78 -0.3 227,053 - MPMX19_04821 0.78 -0.9 227,154 + MPMX19_04821 0.82 -0.4 227,154 + MPMX19_04821 0.82 -1.5 227,154 + MPMX19_04821 0.82 -0.5 227,154 + MPMX19_04821 0.82 -1.5 227,154 + MPMX19_04821 0.82 -1.5 227,154 + MPMX19_04821 0.82 -1.9 227,154 + MPMX19_04821 0.82 -1.4 227,154 + MPMX19_04821 0.82 -0.0 227,154 + MPMX19_04821 0.82 -0.9 227,154 + MPMX19_04821 0.82 -0.6 227,154 + MPMX19_04821 0.82 -1.1 227,154 + MPMX19_04821 0.82 -2.2 227,154 + MPMX19_04821 0.82 -0.2 227,154 + MPMX19_04821 0.82 -1.8 227,154 + MPMX19_04821 0.82 -0.2 227,155 - MPMX19_04821 0.82 -0.1 227,155 - MPMX19_04821 0.82 -1.5 227,155 - MPMX19_04821 0.82 -0.3 227,155 - MPMX19_04821 0.82 -1.9 227,155 - MPMX19_04821 0.82 +0.7 227,155 - MPMX19_04821 0.82 -0.5 227,155 - MPMX19_04821 0.82 -0.5 227,155 - MPMX19_04821 0.82 -0.3 227,155 - MPMX19_04821 0.82 -0.2 227,155 - MPMX19_04821 0.82 -0.0 227,155 - MPMX19_04821 0.82 -1.3 227,155 - MPMX19_04821 0.82 -0.1 227,155 - MPMX19_04821 0.82 -0.7 227,155 - MPMX19_04821 0.82 +0.9 227,155 - MPMX19_04821 0.82 -1.2 227,155 - MPMX19_04821 0.82 -0.4 227,155 - MPMX19_04821 0.82 -1.0 227,155 - MPMX19_04821 0.82 -1.8 227,155 - MPMX19_04821 0.82 +0.3 227,155 - MPMX19_04821 0.82 +0.7 227,155 - MPMX19_04821 0.82 -0.3 227,155 - MPMX19_04821 0.82 -0.3 227,187 + MPMX19_04821 0.84 +1.3 227,187 + MPMX19_04821 0.84 -0.5 227,188 - MPMX19_04821 0.84 -1.6 227,188 - MPMX19_04821 0.84 -2.1 227,188 - MPMX19_04821 0.84 -0.1 227,188 - MPMX19_04821 0.84 -0.3 227,188 - MPMX19_04821 0.84 -0.8 227,188 - MPMX19_04821 0.84 +0.5 227,223 + MPMX19_04821 0.86 -0.9 227,223 + MPMX19_04821 0.86 +0.2 227,223 + MPMX19_04821 0.86 +0.2 227,223 + MPMX19_04821 0.86 -1.1 227,223 + MPMX19_04821 0.86 +0.2 227,223 + MPMX19_04821 0.86 -0.7 227,223 + MPMX19_04821 0.86 +0.1 227,224 - MPMX19_04821 0.86 -0.8 227,224 - MPMX19_04821 0.86 -0.1 227,224 - MPMX19_04821 0.86 -2.5 227,224 - MPMX19_04821 0.86 -0.9 227,224 - MPMX19_04821 0.86 -0.7 227,358 + -1.3 227,358 + +0.3 227,358 + -0.3 227,359 - -0.2 227,445 + -0.1 227,445 + +0.2 227,446 - +0.4 227,446 - +0.5 227,446 - -0.2 227,527 + -1.5 227,527 + +0.9 227,528 - -0.3 227,528 - +0.4 227,528 - -1.7 227,528 - -0.1 227,551 - -0.7 227,551 - +0.5 227,551 - -1.1 227,760 + +0.3 227,760 + +0.5 227,760 + +1.3 227,761 - -1.0 227,764 - -0.6 227,774 + -0.0 227,888 + MPMX19_04822 0.12 +0.1 228,271 + MPMX19_04822 0.78 -0.9 228,271 + MPMX19_04822 0.78 +1.0 228,271 + MPMX19_04822 0.78 -1.1 228,271 + MPMX19_04822 0.78 +0.1 228,271 + MPMX19_04822 0.78 -0.5 228,271 + MPMX19_04822 0.78 +1.0 228,271 + MPMX19_04822 0.78 -0.6 228,272 + MPMX19_04822 0.78 +0.1 228,272 - MPMX19_04822 0.78 +0.3 228,272 - MPMX19_04822 0.78 +1.2 228,272 - MPMX19_04822 0.78 -0.3 228,272 - MPMX19_04822 0.78 +0.1 228,272 - MPMX19_04822 0.78 -0.5 228,272 - MPMX19_04822 0.78 -0.2 228,272 - MPMX19_04822 0.78 +0.6 228,272 - MPMX19_04822 0.78 +0.0 228,272 - MPMX19_04822 0.78 +0.5 228,272 - MPMX19_04822 0.78 -1.6 228,272 - MPMX19_04822 0.78 -0.1 228,420 + -0.1 228,420 + -0.4 228,421 - -1.1 228,421 - +0.8 228,421 - -1.3 228,425 + -0.9 228,425 + -0.3 228,426 - +0.4 228,426 - -0.3
Or see this region's nucleotide sequence