Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04709 and MPMX19_04710 are separated by 191 nucleotides MPMX19_04710 and MPMX19_04711 are separated by 41 nucleotides MPMX19_04711 and MPMX19_04712 are separated by 19 nucleotides MPMX19_04712 and MPMX19_04713 are separated by 75 nucleotides
MPMX19_04709: MPMX19_04709 - HTH-type transcriptional regulator CdhR, at 97,031 to 98,044
_04709
MPMX19_04710: MPMX19_04710 - hypothetical protein, at 98,236 to 98,766
_04710
MPMX19_04711: MPMX19_04711 - Formyltetrahydrofolate deformylase, at 98,808 to 99,671
_04711
MPMX19_04712: MPMX19_04712 - hypothetical protein, at 99,691 to 99,867
_04712
MPMX19_04713: MPMX19_04713 - putative MFS-type transporter YcaD, at 99,943 to 101,217
_04713
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.883 kb on + strand, within MPMX19_04709 at 98.094 kb on + strand at 98.094 kb on + strand at 98.094 kb on + strand at 98.094 kb on + strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.101 kb on - strand at 98.101 kb on - strand at 98.101 kb on - strand at 98.737 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.792 kb on - strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.887 kb on - strand at 98.887 kb on - strand at 98.887 kb on - strand at 99.132 kb on + strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.229 kb on - strand, within MPMX19_04711 at 99.330 kb on + strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.331 kb on - strand, within MPMX19_04711 at 99.403 kb on + strand, within MPMX19_04711 at 99.403 kb on + strand, within MPMX19_04711 at 99.430 kb on - strand, within MPMX19_04711 at 99.430 kb on - strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.441 kb on + strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.442 kb on - strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.480 kb on + strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.481 kb on - strand, within MPMX19_04711 at 99.863 kb on + strand at 99.864 kb on - strand at 99.864 kb on - strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.865 kb on + strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 99.866 kb on - strand at 100.003 kb on - strand at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.087 kb on + strand, within MPMX19_04713 at 100.088 kb on - strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.090 kb on + strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.091 kb on - strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.149 kb on + strand, within MPMX19_04713 at 100.150 kb on - strand, within MPMX19_04713 at 100.150 kb on - strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.342 kb on + strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.343 kb on - strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.357 kb on + strand, within MPMX19_04713 at 100.358 kb on - strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.381 kb on + strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.382 kb on - strand, within MPMX19_04713 at 100.528 kb on + strand, within MPMX19_04713 at 100.591 kb on + strand, within MPMX19_04713 at 100.591 kb on + strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.592 kb on - strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.609 kb on + strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713 at 100.610 kb on - strand, within MPMX19_04713
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 97,883 + MPMX19_04709 0.84 +0.1 98,094 + -2.0 98,094 + -0.8 98,094 + +0.8 98,094 + -1.7 98,095 - +0.2 98,095 - -1.2 98,095 - +0.1 98,095 - -0.6 98,095 - +0.4 98,095 - -0.2 98,095 - -1.0 98,095 - +0.1 98,100 + -0.5 98,100 + -1.1 98,100 + -0.9 98,100 + +0.4 98,100 + -2.4 98,101 - -1.2 98,101 - +0.5 98,101 - -0.9 98,737 + -0.2 98,770 + -0.1 98,770 + -0.0 98,770 + +0.4 98,770 + -0.6 98,771 - +0.5 98,771 - -0.3 98,771 - -0.7 98,771 - -0.7 98,771 - +0.0 98,771 - +0.1 98,771 - +0.1 98,771 - +0.1 98,792 - +0.1 98,832 + +0.2 98,832 + -0.7 98,832 + +0.1 98,832 + -0.5 98,832 + -0.6 98,832 + -0.1 98,832 + -1.2 98,833 - +0.4 98,833 - +1.3 98,833 - -1.4 98,833 - -1.4 98,833 - -0.4 98,833 - +0.5 98,882 + -1.2 98,882 + +1.1 98,882 + +0.1 98,882 + -0.7 98,882 + -0.7 98,883 - +1.9 98,883 - -1.5 98,883 - -0.1 98,883 - -1.7 98,883 - +0.1 98,883 - -1.3 98,883 - -0.2 98,883 - -0.1 98,886 + -0.1 98,886 + -0.2 98,886 + -1.2 98,886 + -1.5 98,886 + -0.7 98,886 + -0.4 98,886 + +0.1 98,886 + -0.2 98,887 - +0.1 98,887 - -0.4 98,887 - -0.4 99,132 + MPMX19_04711 0.38 +0.6 99,229 - MPMX19_04711 0.49 +1.2 99,229 - MPMX19_04711 0.49 +0.6 99,229 - MPMX19_04711 0.49 -1.5 99,330 + MPMX19_04711 0.60 +0.2 99,331 - MPMX19_04711 0.61 +0.6 99,331 - MPMX19_04711 0.61 -0.1 99,331 - MPMX19_04711 0.61 -2.4 99,331 - MPMX19_04711 0.61 -0.4 99,331 - MPMX19_04711 0.61 +0.8 99,331 - MPMX19_04711 0.61 +1.9 99,403 + MPMX19_04711 0.69 -2.1 99,403 + MPMX19_04711 0.69 +0.5 99,430 - MPMX19_04711 0.72 +1.1 99,430 - MPMX19_04711 0.72 +1.4 99,441 + MPMX19_04711 0.73 -0.1 99,441 + MPMX19_04711 0.73 -0.1 99,441 + MPMX19_04711 0.73 -0.3 99,442 - MPMX19_04711 0.73 -1.9 99,442 - MPMX19_04711 0.73 -0.0 99,442 - MPMX19_04711 0.73 -0.8 99,442 - MPMX19_04711 0.73 -0.2 99,480 + MPMX19_04711 0.78 -0.7 99,480 + MPMX19_04711 0.78 -0.1 99,480 + MPMX19_04711 0.78 +0.7 99,480 + MPMX19_04711 0.78 -1.2 99,480 + MPMX19_04711 0.78 -0.7 99,480 + MPMX19_04711 0.78 -1.2 99,481 - MPMX19_04711 0.78 +0.4 99,481 - MPMX19_04711 0.78 -0.9 99,481 - MPMX19_04711 0.78 +0.3 99,481 - MPMX19_04711 0.78 +1.6 99,481 - MPMX19_04711 0.78 +0.9 99,481 - MPMX19_04711 0.78 +0.4 99,481 - MPMX19_04711 0.78 +1.1 99,481 - MPMX19_04711 0.78 -0.1 99,481 - MPMX19_04711 0.78 -0.8 99,481 - MPMX19_04711 0.78 -1.8 99,481 - MPMX19_04711 0.78 -0.4 99,863 + +1.0 99,864 - -1.2 99,864 - -1.1 99,865 + -0.7 99,865 + +0.5 99,865 + -2.1 99,865 + +0.1 99,865 + -0.5 99,865 + -0.1 99,865 + -0.4 99,865 + -0.8 99,865 + -0.2 99,865 + -1.2 99,865 + -0.5 99,866 - -1.5 99,866 - -1.2 99,866 - +0.1 99,866 - -0.7 99,866 - -2.7 99,866 - -0.2 99,866 - +0.9 99,866 - -2.8 99,866 - -1.5 99,866 - +0.2 99,866 - -0.5 99,866 - -0.0 99,866 - +0.8 100,003 - -1.4 100,087 + MPMX19_04713 0.11 -0.7 100,087 + MPMX19_04713 0.11 -0.7 100,087 + MPMX19_04713 0.11 +0.6 100,087 + MPMX19_04713 0.11 +0.6 100,087 + MPMX19_04713 0.11 +0.6 100,088 - MPMX19_04713 0.11 +0.1 100,090 + MPMX19_04713 0.12 -0.6 100,090 + MPMX19_04713 0.12 +0.5 100,090 + MPMX19_04713 0.12 -0.2 100,090 + MPMX19_04713 0.12 +0.1 100,090 + MPMX19_04713 0.12 -1.2 100,091 - MPMX19_04713 0.12 -0.9 100,091 - MPMX19_04713 0.12 +0.8 100,091 - MPMX19_04713 0.12 +0.2 100,091 - MPMX19_04713 0.12 -1.2 100,149 + MPMX19_04713 0.16 -1.2 100,149 + MPMX19_04713 0.16 -2.8 100,149 + MPMX19_04713 0.16 -0.2 100,149 + MPMX19_04713 0.16 +0.2 100,149 + MPMX19_04713 0.16 +0.1 100,150 - MPMX19_04713 0.16 +0.4 100,150 - MPMX19_04713 0.16 +0.2 100,342 + MPMX19_04713 0.31 +0.5 100,342 + MPMX19_04713 0.31 -0.5 100,342 + MPMX19_04713 0.31 +0.3 100,342 + MPMX19_04713 0.31 -2.1 100,342 + MPMX19_04713 0.31 -0.2 100,342 + MPMX19_04713 0.31 +0.5 100,342 + MPMX19_04713 0.31 -1.4 100,342 + MPMX19_04713 0.31 +0.8 100,342 + MPMX19_04713 0.31 -1.2 100,343 - MPMX19_04713 0.31 -0.2 100,343 - MPMX19_04713 0.31 +0.3 100,343 - MPMX19_04713 0.31 -0.3 100,343 - MPMX19_04713 0.31 -2.7 100,343 - MPMX19_04713 0.31 -0.7 100,343 - MPMX19_04713 0.31 -0.9 100,343 - MPMX19_04713 0.31 +0.6 100,343 - MPMX19_04713 0.31 +0.1 100,343 - MPMX19_04713 0.31 -0.7 100,343 - MPMX19_04713 0.31 -0.8 100,357 + MPMX19_04713 0.32 -1.4 100,357 + MPMX19_04713 0.32 -1.2 100,357 + MPMX19_04713 0.32 -0.3 100,357 + MPMX19_04713 0.32 -1.9 100,357 + MPMX19_04713 0.32 +0.6 100,358 - MPMX19_04713 0.33 -1.1 100,381 + MPMX19_04713 0.34 +1.3 100,381 + MPMX19_04713 0.34 -1.0 100,381 + MPMX19_04713 0.34 -0.4 100,381 + MPMX19_04713 0.34 +1.6 100,381 + MPMX19_04713 0.34 -0.2 100,382 - MPMX19_04713 0.34 -0.8 100,382 - MPMX19_04713 0.34 -0.8 100,382 - MPMX19_04713 0.34 -0.9 100,528 + MPMX19_04713 0.46 +0.1 100,591 + MPMX19_04713 0.51 +0.2 100,591 + MPMX19_04713 0.51 +0.5 100,592 - MPMX19_04713 0.51 -1.9 100,592 - MPMX19_04713 0.51 +0.2 100,592 - MPMX19_04713 0.51 -1.0 100,592 - MPMX19_04713 0.51 +0.1 100,592 - MPMX19_04713 0.51 -0.4 100,592 - MPMX19_04713 0.51 -0.6 100,592 - MPMX19_04713 0.51 +0.2 100,592 - MPMX19_04713 0.51 +0.6 100,592 - MPMX19_04713 0.51 -0.2 100,592 - MPMX19_04713 0.51 +0.3 100,592 - MPMX19_04713 0.51 +0.0 100,592 - MPMX19_04713 0.51 -0.7 100,592 - MPMX19_04713 0.51 -0.4 100,609 + MPMX19_04713 0.52 +0.5 100,609 + MPMX19_04713 0.52 -0.9 100,609 + MPMX19_04713 0.52 +0.4 100,609 + MPMX19_04713 0.52 +0.2 100,609 + MPMX19_04713 0.52 -1.1 100,609 + MPMX19_04713 0.52 -1.8 100,609 + MPMX19_04713 0.52 +0.1 100,609 + MPMX19_04713 0.52 +0.4 100,609 + MPMX19_04713 0.52 +1.2 100,609 + MPMX19_04713 0.52 +0.6 100,610 - MPMX19_04713 0.52 -0.3 100,610 - MPMX19_04713 0.52 -0.0 100,610 - MPMX19_04713 0.52 -0.9 100,610 - MPMX19_04713 0.52 +0.9 100,610 - MPMX19_04713 0.52 +2.4 100,610 - MPMX19_04713 0.52 -1.4 100,610 - MPMX19_04713 0.52 +1.0 100,610 - MPMX19_04713 0.52 -0.5 100,610 - MPMX19_04713 0.52 +1.0 100,610 - MPMX19_04713 0.52 -0.8
Or see this region's nucleotide sequence