Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04534

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04532 and MPMX19_04533 are separated by 81 nucleotidesMPMX19_04533 and MPMX19_04534 are separated by 45 nucleotidesMPMX19_04534 and MPMX19_04535 are separated by 178 nucleotides MPMX19_04532: MPMX19_04532 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 903,865 to 906,003 _04532 MPMX19_04533: MPMX19_04533 - HTH-type transcriptional regulator NimR, at 906,085 to 906,906 _04533 MPMX19_04534: MPMX19_04534 - Multidrug export protein MepA, at 906,952 to 908,382 _04534 MPMX19_04535: MPMX19_04535 - Maleate isomerase, at 908,561 to 909,367 _04535 Position (kb) 906 907 908 909Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 906.045 kb on + strandat 906.045 kb on + strandat 906.184 kb on + strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.185 kb on - strand, within MPMX19_04533at 906.361 kb on + strand, within MPMX19_04533at 906.361 kb on + strand, within MPMX19_04533at 906.361 kb on + strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.362 kb on - strand, within MPMX19_04533at 906.800 kb on - strand, within MPMX19_04533at 906.862 kb on + strandat 906.862 kb on + strandat 906.862 kb on + strandat 906.862 kb on + strandat 906.862 kb on + strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 906.863 kb on - strandat 907.183 kb on + strand, within MPMX19_04534at 907.183 kb on + strand, within MPMX19_04534at 907.183 kb on + strand, within MPMX19_04534at 907.184 kb on - strand, within MPMX19_04534at 907.184 kb on - strand, within MPMX19_04534at 907.184 kb on - strand, within MPMX19_04534at 907.426 kb on + strand, within MPMX19_04534at 907.426 kb on + strand, within MPMX19_04534at 907.426 kb on + strand, within MPMX19_04534at 907.427 kb on - strand, within MPMX19_04534at 907.427 kb on - strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.610 kb on + strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.611 kb on - strand, within MPMX19_04534at 907.862 kb on + strand, within MPMX19_04534at 907.862 kb on + strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.863 kb on - strand, within MPMX19_04534at 907.970 kb on + strand, within MPMX19_04534at 907.970 kb on + strand, within MPMX19_04534at 907.970 kb on + strand, within MPMX19_04534at 907.971 kb on - strand, within MPMX19_04534at 907.971 kb on - strand, within MPMX19_04534at 907.971 kb on - strand, within MPMX19_04534at 908.258 kb on + strandat 908.258 kb on + strandat 908.258 kb on + strandat 908.258 kb on + strandat 908.259 kb on - strandat 908.366 kb on - strandat 908.366 kb on - strandat 908.366 kb on - strandat 908.430 kb on + strandat 908.430 kb on + strandat 908.431 kb on - strandat 908.431 kb on - strandat 908.562 kb on + strandat 908.874 kb on + strand, within MPMX19_04535at 908.874 kb on + strand, within MPMX19_04535at 908.874 kb on + strand, within MPMX19_04535at 908.875 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.358 kb on - strandat 909.361 kb on + strandat 909.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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906,045 + +1.2
906,045 + -0.3
906,184 + MPMX19_04533 0.12 -0.6
906,185 - MPMX19_04533 0.12 +0.2
906,185 - MPMX19_04533 0.12 -0.1
906,185 - MPMX19_04533 0.12 -1.3
906,185 - MPMX19_04533 0.12 -0.6
906,361 + MPMX19_04533 0.34 +1.2
906,361 + MPMX19_04533 0.34 -1.0
906,361 + MPMX19_04533 0.34 -0.5
906,362 - MPMX19_04533 0.34 +0.2
906,362 - MPMX19_04533 0.34 +0.2
906,362 - MPMX19_04533 0.34 +0.7
906,362 - MPMX19_04533 0.34 +0.3
906,362 - MPMX19_04533 0.34 +0.1
906,800 - MPMX19_04533 0.87 -0.6
906,862 + -2.3
906,862 + -1.3
906,862 + -0.1
906,862 + -1.1
906,862 + +0.3
906,863 - +0.0
906,863 - +0.1
906,863 - -0.3
906,863 - -1.0
906,863 - -1.6
906,863 - -0.4
906,863 - -0.7
906,863 - +0.5
906,863 - +1.6
906,863 - +2.0
906,863 - -0.0
906,863 - -1.2
906,863 - +1.1
907,183 + MPMX19_04534 0.16 +1.3
907,183 + MPMX19_04534 0.16 -1.3
907,183 + MPMX19_04534 0.16 -0.2
907,184 - MPMX19_04534 0.16 -0.8
907,184 - MPMX19_04534 0.16 -1.5
907,184 - MPMX19_04534 0.16 -0.6
907,426 + MPMX19_04534 0.33 -0.7
907,426 + MPMX19_04534 0.33 -0.8
907,426 + MPMX19_04534 0.33 -1.2
907,427 - MPMX19_04534 0.33 -1.1
907,427 - MPMX19_04534 0.33 +0.2
907,610 + MPMX19_04534 0.46 +1.4
907,610 + MPMX19_04534 0.46 +0.9
907,610 + MPMX19_04534 0.46 -0.1
907,610 + MPMX19_04534 0.46 +0.2
907,610 + MPMX19_04534 0.46 -0.4
907,610 + MPMX19_04534 0.46 +1.1
907,610 + MPMX19_04534 0.46 +0.0
907,611 - MPMX19_04534 0.46 -0.3
907,611 - MPMX19_04534 0.46 -2.1
907,611 - MPMX19_04534 0.46 -0.1
907,611 - MPMX19_04534 0.46 +0.0
907,611 - MPMX19_04534 0.46 -1.3
907,611 - MPMX19_04534 0.46 -0.2
907,611 - MPMX19_04534 0.46 -1.0
907,611 - MPMX19_04534 0.46 +0.2
907,611 - MPMX19_04534 0.46 -1.8
907,611 - MPMX19_04534 0.46 -0.5
907,611 - MPMX19_04534 0.46 -2.6
907,862 + MPMX19_04534 0.64 +0.6
907,862 + MPMX19_04534 0.64 -1.1
907,863 - MPMX19_04534 0.64 -1.1
907,863 - MPMX19_04534 0.64 -0.2
907,863 - MPMX19_04534 0.64 -0.0
907,970 + MPMX19_04534 0.71 -0.8
907,970 + MPMX19_04534 0.71 -0.4
907,970 + MPMX19_04534 0.71 -1.0
907,971 - MPMX19_04534 0.71 -1.8
907,971 - MPMX19_04534 0.71 +1.2
907,971 - MPMX19_04534 0.71 +0.3
908,258 + +2.7
908,258 + -2.1
908,258 + -0.3
908,258 + -1.4
908,259 - -1.3
908,366 - -2.3
908,366 - +0.2
908,366 - +0.3
908,430 + +0.9
908,430 + +0.6
908,431 - +0.5
908,431 - -0.2
908,562 + +0.9
908,874 + MPMX19_04535 0.39 -1.7
908,874 + MPMX19_04535 0.39 -1.4
908,874 + MPMX19_04535 0.39 -1.9
908,875 - MPMX19_04535 0.39 -1.3
909,184 - MPMX19_04535 0.77 +0.2
909,184 - MPMX19_04535 0.77 -2.0
909,184 - MPMX19_04535 0.77 -2.1
909,358 - -3.6
909,361 + -1.0
909,362 - +0.6

Or see this region's nucleotide sequence