Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04450 and MPMX19_04451 are separated by 226 nucleotides MPMX19_04451 and MPMX19_04452 are separated by 302 nucleotides
MPMX19_04450: MPMX19_04450 - hypothetical protein, at 817,010 to 818,038
_04450
MPMX19_04451: MPMX19_04451 - hypothetical protein, at 818,265 to 819,008
_04451
MPMX19_04452: MPMX19_04452 - Oxalate:formate antiporter, at 819,311 to 820,615
_04452
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.560 kb on + strand, within MPMX19_04450 at 817.560 kb on + strand, within MPMX19_04450 at 817.560 kb on + strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.561 kb on - strand, within MPMX19_04450 at 817.605 kb on + strand, within MPMX19_04450 at 817.605 kb on + strand, within MPMX19_04450 at 817.710 kb on + strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.711 kb on - strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.716 kb on + strand, within MPMX19_04450 at 817.717 kb on - strand, within MPMX19_04450 at 817.717 kb on - strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.722 kb on + strand, within MPMX19_04450 at 817.723 kb on - strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.830 kb on + strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.831 kb on - strand, within MPMX19_04450 at 817.998 kb on + strand at 817.999 kb on - strand at 817.999 kb on - strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.022 kb on + strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.023 kb on - strand at 818.250 kb on + strand at 818.250 kb on + strand at 818.250 kb on + strand at 818.251 kb on - strand at 818.251 kb on - strand at 818.287 kb on + strand at 818.287 kb on + strand at 818.287 kb on + strand at 818.371 kb on + strand, within MPMX19_04451 at 818.371 kb on + strand, within MPMX19_04451 at 818.371 kb on + strand, within MPMX19_04451 at 818.371 kb on + strand, within MPMX19_04451 at 818.372 kb on - strand, within MPMX19_04451 at 818.570 kb on - strand, within MPMX19_04451 at 818.570 kb on - strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.578 kb on + strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.579 kb on - strand, within MPMX19_04451 at 818.654 kb on - strand, within MPMX19_04451 at 818.654 kb on - strand, within MPMX19_04451 at 818.827 kb on + strand, within MPMX19_04451 at 818.828 kb on - strand, within MPMX19_04451 at 818.828 kb on - strand, within MPMX19_04451 at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 818.999 kb on + strand at 819.000 kb on - strand at 819.000 kb on - strand at 819.000 kb on - strand at 819.215 kb on + strand at 819.215 kb on + strand at 819.215 kb on + strand at 819.216 kb on - strand at 819.216 kb on - strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.230 kb on + strand at 819.231 kb on - strand at 819.231 kb on - strand at 819.231 kb on - strand at 819.231 kb on - strand at 819.231 kb on - strand at 819.231 kb on - strand at 819.231 kb on - strand at 819.246 kb on + strand at 819.247 kb on - strand at 819.247 kb on - strand at 819.247 kb on - strand at 819.525 kb on + strand, within MPMX19_04452 at 819.525 kb on + strand, within MPMX19_04452 at 819.525 kb on + strand, within MPMX19_04452 at 819.525 kb on + strand, within MPMX19_04452 at 819.525 kb on + strand, within MPMX19_04452 at 819.525 kb on + strand, within MPMX19_04452 at 819.525 kb on + strand, within MPMX19_04452 at 819.526 kb on - strand, within MPMX19_04452 at 819.526 kb on - strand, within MPMX19_04452 at 819.526 kb on - strand, within MPMX19_04452 at 819.526 kb on - strand, within MPMX19_04452 at 819.598 kb on - strand, within MPMX19_04452 at 819.598 kb on - strand, within MPMX19_04452 at 819.598 kb on - strand, within MPMX19_04452 at 819.598 kb on - strand, within MPMX19_04452 at 819.598 kb on - strand, within MPMX19_04452 at 819.733 kb on + strand, within MPMX19_04452 at 819.733 kb on + strand, within MPMX19_04452 at 819.734 kb on - strand, within MPMX19_04452 at 819.734 kb on - strand, within MPMX19_04452 at 819.734 kb on - strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.930 kb on + strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.931 kb on - strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.975 kb on + strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452 at 819.976 kb on - strand, within MPMX19_04452
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 817,560 + MPMX19_04450 0.53 +0.8 817,560 + MPMX19_04450 0.53 +0.2 817,560 + MPMX19_04450 0.53 -0.3 817,561 - MPMX19_04450 0.54 -0.3 817,561 - MPMX19_04450 0.54 +0.1 817,561 - MPMX19_04450 0.54 -0.7 817,561 - MPMX19_04450 0.54 +0.4 817,561 - MPMX19_04450 0.54 -0.1 817,561 - MPMX19_04450 0.54 -1.1 817,561 - MPMX19_04450 0.54 -2.9 817,561 - MPMX19_04450 0.54 -1.2 817,561 - MPMX19_04450 0.54 -0.7 817,561 - MPMX19_04450 0.54 -0.8 817,605 + MPMX19_04450 0.58 +0.0 817,605 + MPMX19_04450 0.58 -0.9 817,710 + MPMX19_04450 0.68 +1.2 817,711 - MPMX19_04450 0.68 -1.4 817,711 - MPMX19_04450 0.68 +0.3 817,711 - MPMX19_04450 0.68 +0.6 817,711 - MPMX19_04450 0.68 +0.4 817,716 + MPMX19_04450 0.69 -1.6 817,716 + MPMX19_04450 0.69 +0.4 817,716 + MPMX19_04450 0.69 -0.3 817,716 + MPMX19_04450 0.69 -0.8 817,716 + MPMX19_04450 0.69 -0.6 817,716 + MPMX19_04450 0.69 -1.8 817,716 + MPMX19_04450 0.69 -0.6 817,716 + MPMX19_04450 0.69 -1.1 817,716 + MPMX19_04450 0.69 +0.3 817,717 - MPMX19_04450 0.69 -0.9 817,717 - MPMX19_04450 0.69 -0.5 817,722 + MPMX19_04450 0.69 +0.4 817,722 + MPMX19_04450 0.69 -1.3 817,722 + MPMX19_04450 0.69 -1.1 817,722 + MPMX19_04450 0.69 -1.8 817,723 - MPMX19_04450 0.69 +1.1 817,830 + MPMX19_04450 0.80 +0.3 817,830 + MPMX19_04450 0.80 +0.2 817,830 + MPMX19_04450 0.80 -0.5 817,830 + MPMX19_04450 0.80 +0.4 817,830 + MPMX19_04450 0.80 -0.7 817,830 + MPMX19_04450 0.80 -0.9 817,830 + MPMX19_04450 0.80 +0.8 817,831 - MPMX19_04450 0.80 +1.2 817,831 - MPMX19_04450 0.80 -2.2 817,831 - MPMX19_04450 0.80 +0.2 817,831 - MPMX19_04450 0.80 +0.5 817,831 - MPMX19_04450 0.80 +0.2 817,831 - MPMX19_04450 0.80 -0.6 817,831 - MPMX19_04450 0.80 -3.1 817,998 + -3.2 817,999 - +0.8 817,999 - +1.2 818,022 + -0.5 818,022 + +0.3 818,022 + +0.5 818,022 + +0.1 818,022 + -0.6 818,022 + -0.8 818,022 + +0.8 818,022 + -0.7 818,023 - +0.1 818,023 - -0.1 818,023 - -1.3 818,023 - -1.2 818,023 - -0.9 818,023 - -0.6 818,023 - -0.9 818,023 - +0.0 818,023 - +0.7 818,250 + -0.6 818,250 + -0.6 818,250 + +0.8 818,251 - -1.3 818,251 - -0.4 818,287 + +0.2 818,287 + +0.1 818,287 + -1.1 818,371 + MPMX19_04451 0.14 +0.6 818,371 + MPMX19_04451 0.14 +0.3 818,371 + MPMX19_04451 0.14 -1.2 818,371 + MPMX19_04451 0.14 -0.2 818,372 - MPMX19_04451 0.14 -0.2 818,570 - MPMX19_04451 0.41 -2.3 818,570 - MPMX19_04451 0.41 -1.7 818,578 + MPMX19_04451 0.42 -0.9 818,578 + MPMX19_04451 0.42 -2.4 818,578 + MPMX19_04451 0.42 -0.1 818,578 + MPMX19_04451 0.42 -1.2 818,578 + MPMX19_04451 0.42 -2.4 818,578 + MPMX19_04451 0.42 +2.5 818,579 - MPMX19_04451 0.42 -1.8 818,579 - MPMX19_04451 0.42 +1.1 818,579 - MPMX19_04451 0.42 +0.2 818,579 - MPMX19_04451 0.42 +0.8 818,579 - MPMX19_04451 0.42 -0.8 818,579 - MPMX19_04451 0.42 -0.4 818,579 - MPMX19_04451 0.42 -0.5 818,654 - MPMX19_04451 0.52 +0.9 818,654 - MPMX19_04451 0.52 +0.3 818,827 + MPMX19_04451 0.76 -1.1 818,828 - MPMX19_04451 0.76 +0.4 818,828 - MPMX19_04451 0.76 -0.2 818,999 + -2.7 818,999 + +0.9 818,999 + -1.9 818,999 + -0.8 818,999 + -1.6 818,999 + -1.7 818,999 + +0.3 819,000 - +0.8 819,000 - +1.2 819,000 - -0.1 819,215 + -0.2 819,215 + -0.8 819,215 + -0.6 819,216 - +0.4 819,216 - -1.6 819,230 + -3.1 819,230 + +0.9 819,230 + -0.7 819,230 + -0.6 819,230 + -0.5 819,230 + -1.4 819,230 + +0.1 819,230 + -1.7 819,230 + -1.1 819,230 + -0.8 819,231 - -1.8 819,231 - -1.7 819,231 - -0.4 819,231 - +1.6 819,231 - -0.3 819,231 - +0.4 819,231 - -1.2 819,246 + -0.2 819,247 - +0.4 819,247 - +0.2 819,247 - -0.7 819,525 + MPMX19_04452 0.16 -1.2 819,525 + MPMX19_04452 0.16 -0.1 819,525 + MPMX19_04452 0.16 +0.2 819,525 + MPMX19_04452 0.16 -1.6 819,525 + MPMX19_04452 0.16 -0.4 819,525 + MPMX19_04452 0.16 +0.5 819,525 + MPMX19_04452 0.16 +0.3 819,526 - MPMX19_04452 0.16 -0.6 819,526 - MPMX19_04452 0.16 +0.2 819,526 - MPMX19_04452 0.16 -1.9 819,526 - MPMX19_04452 0.16 -0.3 819,598 - MPMX19_04452 0.22 +0.3 819,598 - MPMX19_04452 0.22 -1.2 819,598 - MPMX19_04452 0.22 +0.8 819,598 - MPMX19_04452 0.22 +0.2 819,598 - MPMX19_04452 0.22 -2.2 819,733 + MPMX19_04452 0.32 -0.7 819,733 + MPMX19_04452 0.32 -0.6 819,734 - MPMX19_04452 0.32 +0.9 819,734 - MPMX19_04452 0.32 -1.2 819,734 - MPMX19_04452 0.32 -0.9 819,930 + MPMX19_04452 0.47 -1.1 819,930 + MPMX19_04452 0.47 -1.2 819,930 + MPMX19_04452 0.47 -0.2 819,930 + MPMX19_04452 0.47 -0.1 819,930 + MPMX19_04452 0.47 +0.8 819,930 + MPMX19_04452 0.47 -0.2 819,930 + MPMX19_04452 0.47 -0.0 819,930 + MPMX19_04452 0.47 -0.5 819,930 + MPMX19_04452 0.47 -0.1 819,930 + MPMX19_04452 0.47 -1.6 819,930 + MPMX19_04452 0.47 -1.9 819,930 + MPMX19_04452 0.47 +0.2 819,930 + MPMX19_04452 0.47 +1.4 819,930 + MPMX19_04452 0.47 -1.8 819,931 - MPMX19_04452 0.48 +1.3 819,931 - MPMX19_04452 0.48 -1.2 819,931 - MPMX19_04452 0.48 -1.6 819,931 - MPMX19_04452 0.48 -2.3 819,931 - MPMX19_04452 0.48 -0.6 819,931 - MPMX19_04452 0.48 -1.8 819,931 - MPMX19_04452 0.48 -1.7 819,931 - MPMX19_04452 0.48 -1.1 819,931 - MPMX19_04452 0.48 +1.2 819,931 - MPMX19_04452 0.48 -0.8 819,931 - MPMX19_04452 0.48 -0.8 819,975 + MPMX19_04452 0.51 +0.2 819,975 + MPMX19_04452 0.51 -1.8 819,975 + MPMX19_04452 0.51 -1.8 819,975 + MPMX19_04452 0.51 -0.5 819,975 + MPMX19_04452 0.51 +0.3 819,975 + MPMX19_04452 0.51 -0.6 819,975 + MPMX19_04452 0.51 -1.4 819,975 + MPMX19_04452 0.51 -0.7 819,975 + MPMX19_04452 0.51 -1.3 819,975 + MPMX19_04452 0.51 -0.9 819,976 - MPMX19_04452 0.51 -2.8 819,976 - MPMX19_04452 0.51 -0.1 819,976 - MPMX19_04452 0.51 +0.3 819,976 - MPMX19_04452 0.51 +0.4 819,976 - MPMX19_04452 0.51 -0.0 819,976 - MPMX19_04452 0.51 +0.2 819,976 - MPMX19_04452 0.51 -1.8 819,976 - MPMX19_04452 0.51 +0.1 819,976 - MPMX19_04452 0.51 -0.5 819,976 - MPMX19_04452 0.51 -0.8 819,976 - MPMX19_04452 0.51 +0.2 819,976 - MPMX19_04452 0.51 +1.0 819,976 - MPMX19_04452 0.51 +0.3 819,976 - MPMX19_04452 0.51 +0.6 819,976 - MPMX19_04452 0.51 -0.3
Or see this region's nucleotide sequence