Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04138

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04137 and MPMX19_04138 are separated by 118 nucleotidesMPMX19_04138 and MPMX19_04139 are separated by 95 nucleotidesMPMX19_04139 and MPMX19_04140 are separated by 35 nucleotides MPMX19_04137: MPMX19_04137 - HTH-type transcriptional regulator PgrR, at 449,210 to 450,094 _04137 MPMX19_04138: MPMX19_04138 - hypothetical protein, at 450,213 to 450,674 _04138 MPMX19_04139: MPMX19_04139 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 450,770 to 451,420 _04139 MPMX19_04140: MPMX19_04140 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 451,456 to 452,289 _04140 Position (kb) 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1at 449.271 kb on + strandat 449.271 kb on + strandat 449.271 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.505 kb on + strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.812 kb on + strand, within MPMX19_04137at 450.095 kb on + strandat 450.321 kb on + strand, within MPMX19_04138at 450.321 kb on + strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.364 kb on - strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.385 kb on - strand, within MPMX19_04138at 450.414 kb on + strand, within MPMX19_04138at 450.414 kb on + strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.465 kb on + strand, within MPMX19_04138at 450.493 kb on - strand, within MPMX19_04138at 450.502 kb on - strand, within MPMX19_04138at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.406 kb on + strandat 451.407 kb on - strandat 451.437 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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449,271 + -0.9
449,271 + +0.3
449,271 + -0.1
449,274 + -1.9
449,274 + -1.2
449,274 + +1.4
449,274 + +0.5
449,274 + -0.7
449,274 + -1.7
449,274 + -1.5
449,274 + -1.2
449,274 + -0.7
449,274 + +0.7
449,274 + +0.7
449,274 + -1.0
449,274 + -0.3
449,274 + -1.8
449,275 - +0.0
449,275 - -1.2
449,275 - +1.1
449,275 - +0.1
449,275 - -1.3
449,275 - +0.1
449,275 - +0.9
449,275 - -1.1
449,275 - -0.2
449,275 - -0.1
449,275 - -0.4
449,275 - -0.8
449,275 - +1.3
449,275 - -0.2
449,275 - +0.3
449,275 - +1.0
449,280 + -1.0
449,280 + -0.3
449,280 + -0.2
449,280 + +1.4
449,280 + -0.5
449,281 - +0.5
449,281 - -0.3
449,281 - -0.8
449,281 - -1.7
449,281 - -0.9
449,370 + MPMX19_04137 0.18 +1.0
449,370 + MPMX19_04137 0.18 -0.7
449,370 + MPMX19_04137 0.18 +0.2
449,370 + MPMX19_04137 0.18 +0.8
449,370 + MPMX19_04137 0.18 +0.7
449,370 + MPMX19_04137 0.18 +0.1
449,370 + MPMX19_04137 0.18 -0.3
449,370 + MPMX19_04137 0.18 -1.3
449,370 + MPMX19_04137 0.18 -0.1
449,370 + MPMX19_04137 0.18 +0.8
449,370 + MPMX19_04137 0.18 -0.9
449,370 + MPMX19_04137 0.18 +0.1
449,370 + MPMX19_04137 0.18 -1.2
449,370 + MPMX19_04137 0.18 +0.1
449,370 + MPMX19_04137 0.18 +0.1
449,370 + MPMX19_04137 0.18 -0.3
449,370 + MPMX19_04137 0.18 -1.7
449,370 + MPMX19_04137 0.18 -0.2
449,371 - MPMX19_04137 0.18 +0.3
449,371 - MPMX19_04137 0.18 -0.7
449,371 - MPMX19_04137 0.18 -0.6
449,371 - MPMX19_04137 0.18 -0.3
449,371 - MPMX19_04137 0.18 -0.1
449,371 - MPMX19_04137 0.18 +0.9
449,371 - MPMX19_04137 0.18 -0.2
449,371 - MPMX19_04137 0.18 -1.1
449,371 - MPMX19_04137 0.18 -0.6
449,371 - MPMX19_04137 0.18 +0.5
449,371 - MPMX19_04137 0.18 -0.6
449,371 - MPMX19_04137 0.18 -0.5
449,487 + MPMX19_04137 0.31 -0.9
449,487 + MPMX19_04137 0.31 -0.1
449,487 + MPMX19_04137 0.31 -0.9
449,487 + MPMX19_04137 0.31 -1.1
449,487 + MPMX19_04137 0.31 -0.9
449,488 - MPMX19_04137 0.31 -1.0
449,488 - MPMX19_04137 0.31 -0.1
449,488 - MPMX19_04137 0.31 -1.1
449,488 - MPMX19_04137 0.31 -0.7
449,488 - MPMX19_04137 0.31 -1.3
449,488 - MPMX19_04137 0.31 +0.3
449,505 + MPMX19_04137 0.33 +1.1
449,506 - MPMX19_04137 0.33 +0.7
449,506 - MPMX19_04137 0.33 -0.0
449,506 - MPMX19_04137 0.33 -1.5
449,812 + MPMX19_04137 0.68 +0.7
450,095 + -1.8
450,321 + MPMX19_04138 0.23 -0.6
450,321 + MPMX19_04138 0.23 +0.4
450,322 - MPMX19_04138 0.24 -0.3
450,322 - MPMX19_04138 0.24 +0.1
450,322 - MPMX19_04138 0.24 -1.4
450,322 - MPMX19_04138 0.24 +0.5
450,322 - MPMX19_04138 0.24 -0.2
450,322 - MPMX19_04138 0.24 +1.1
450,322 - MPMX19_04138 0.24 +0.1
450,322 - MPMX19_04138 0.24 -1.1
450,322 - MPMX19_04138 0.24 -0.3
450,322 - MPMX19_04138 0.24 -1.5
450,363 + MPMX19_04138 0.32 -1.3
450,363 + MPMX19_04138 0.32 -1.1
450,363 + MPMX19_04138 0.32 -1.1
450,363 + MPMX19_04138 0.32 -0.2
450,363 + MPMX19_04138 0.32 -0.1
450,364 - MPMX19_04138 0.33 -2.9
450,384 + MPMX19_04138 0.37 -0.7
450,384 + MPMX19_04138 0.37 -1.9
450,384 + MPMX19_04138 0.37 -1.0
450,384 + MPMX19_04138 0.37 -0.2
450,384 + MPMX19_04138 0.37 -0.9
450,384 + MPMX19_04138 0.37 -0.8
450,384 + MPMX19_04138 0.37 +0.1
450,384 + MPMX19_04138 0.37 -0.6
450,384 + MPMX19_04138 0.37 +1.7
450,385 - MPMX19_04138 0.37 -1.2
450,414 + MPMX19_04138 0.44 -0.1
450,414 + MPMX19_04138 0.44 -1.5
450,415 - MPMX19_04138 0.44 -2.2
450,415 - MPMX19_04138 0.44 -2.1
450,415 - MPMX19_04138 0.44 +0.8
450,415 - MPMX19_04138 0.44 +0.4
450,465 + MPMX19_04138 0.55 -1.3
450,493 - MPMX19_04138 0.61 +0.8
450,502 - MPMX19_04138 0.63 -0.3
451,208 + MPMX19_04139 0.67 -1.4
451,208 + MPMX19_04139 0.67 +0.5
451,208 + MPMX19_04139 0.67 -0.9
451,208 + MPMX19_04139 0.67 -0.4
451,208 + MPMX19_04139 0.67 -0.8
451,208 + MPMX19_04139 0.67 +0.3
451,208 + MPMX19_04139 0.67 +0.7
451,208 + MPMX19_04139 0.67 -0.0
451,208 + MPMX19_04139 0.67 -0.1
451,208 + MPMX19_04139 0.67 -0.4
451,209 - MPMX19_04139 0.67 -0.6
451,209 - MPMX19_04139 0.67 -2.6
451,209 - MPMX19_04139 0.67 -1.0
451,402 + -0.7
451,402 + +0.0
451,402 + -0.8
451,402 + -1.9
451,402 + -1.6
451,403 - -1.8
451,403 - +0.9
451,403 - +0.1
451,403 - -1.7
451,403 - -2.0
451,403 - -2.3
451,406 + +0.4
451,407 - -1.1
451,437 + +0.1

Or see this region's nucleotide sequence