Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04024 and MPMX19_04025 are separated by 105 nucleotides MPMX19_04025 and MPMX19_04026 are separated by 226 nucleotides MPMX19_04026 and MPMX19_04027 are separated by 236 nucleotides MPMX19_04027 and MPMX19_04028 are separated by 30 nucleotides
MPMX19_04024: MPMX19_04024 - hypothetical protein, at 320,845 to 321,051
_04024
MPMX19_04025: MPMX19_04025 - hypothetical protein, at 321,157 to 321,384
_04025
MPMX19_04026: MPMX19_04026 - hypothetical protein, at 321,611 to 322,474
_04026
MPMX19_04027: MPMX19_04027 - Inosine-5'-monophosphate dehydrogenase, at 322,711 to 323,412
_04027
MPMX19_04028: MPMX19_04028 - Gamma-glutamylputrescine oxidoreductase, at 323,443 to 324,738
_04028
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.614 kb on + strand at 320.614 kb on + strand at 320.614 kb on + strand at 320.615 kb on - strand at 320.637 kb on - strand at 320.637 kb on - strand at 320.646 kb on + strand at 320.647 kb on - strand at 320.663 kb on + strand at 320.664 kb on - strand at 320.664 kb on - strand at 320.675 kb on - strand at 320.709 kb on - strand at 320.732 kb on + strand at 320.732 kb on + strand at 320.780 kb on - strand at 320.780 kb on - strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.193 kb on - strand, within MPMX19_04025 at 321.207 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.502 kb on - strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.523 kb on - strand at 321.523 kb on - strand at 321.523 kb on - strand at 322.284 kb on + strand, within MPMX19_04026 at 322.284 kb on + strand, within MPMX19_04026 at 322.285 kb on - strand, within MPMX19_04026 at 322.285 kb on - strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.409 kb on + strand at 322.410 kb on - strand at 322.410 kb on - strand at 322.410 kb on - strand at 322.472 kb on + strand at 322.472 kb on + strand at 322.472 kb on + strand at 322.473 kb on - strand at 322.473 kb on - strand at 322.485 kb on + strand at 322.486 kb on - strand at 322.535 kb on + strand at 322.535 kb on + strand at 322.536 kb on - strand at 322.603 kb on - strand at 322.630 kb on + strand at 322.642 kb on - strand at 322.671 kb on + strand at 322.671 kb on + strand at 322.671 kb on + strand at 322.672 kb on - strand at 322.672 kb on - strand at 322.672 kb on - strand at 323.319 kb on - strand, within MPMX19_04027 at 323.410 kb on + strand at 323.410 kb on + strand at 323.410 kb on + strand at 323.411 kb on - strand at 323.415 kb on + strand at 323.415 kb on + strand at 323.415 kb on + strand at 323.416 kb on - strand at 323.416 kb on - strand at 323.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 320,614 + +1.0 320,614 + -1.1 320,614 + -1.5 320,615 - -0.9 320,637 - -0.0 320,637 - +1.3 320,646 + -0.1 320,647 - -1.5 320,663 + +0.9 320,664 - +1.0 320,664 - +0.1 320,675 - +0.7 320,709 - -0.1 320,732 + -1.3 320,732 + -0.0 320,780 - +2.4 320,780 - +0.1 320,854 + -1.4 320,854 + +0.4 320,854 + -0.1 320,854 + -1.8 320,854 + -0.6 320,854 + +1.1 320,854 + +0.5 320,854 + -0.6 320,854 + +0.8 320,854 + -1.0 320,854 + +0.5 320,855 - -0.3 320,855 - -0.6 320,855 - +0.5 320,855 - +1.0 320,855 - +1.0 320,855 - +1.1 320,855 - -1.3 320,855 - -0.9 320,855 - -0.3 320,855 - +0.4 320,855 - -0.1 320,855 - -1.6 320,855 - +1.3 320,855 - +0.0 320,855 - -1.8 320,855 - +0.0 320,855 - +0.2 320,855 - -1.6 320,855 - -0.3 320,855 - +0.7 320,855 - +1.1 320,855 - -0.1 320,855 - -1.9 320,855 - -0.7 320,855 - +0.4 320,855 - -0.3 320,855 - -0.4 320,855 - -1.1 320,855 - +0.1 320,855 - -3.0 321,192 + MPMX19_04025 0.15 -0.1 321,192 + MPMX19_04025 0.15 -1.8 321,192 + MPMX19_04025 0.15 -1.3 321,192 + MPMX19_04025 0.15 -1.0 321,192 + MPMX19_04025 0.15 -1.1 321,192 + MPMX19_04025 0.15 +0.1 321,192 + MPMX19_04025 0.15 +0.3 321,193 - MPMX19_04025 0.16 +0.3 321,207 + MPMX19_04025 0.22 +0.7 321,307 + MPMX19_04025 0.66 -0.1 321,307 + MPMX19_04025 0.66 +0.5 321,307 + MPMX19_04025 0.66 +0.1 321,307 + MPMX19_04025 0.66 -0.0 321,308 - MPMX19_04025 0.66 -2.6 321,308 - MPMX19_04025 0.66 +0.7 321,308 - MPMX19_04025 0.66 -0.0 321,308 - MPMX19_04025 0.66 -0.1 321,308 - MPMX19_04025 0.66 -2.0 321,501 + -2.1 321,501 + +0.4 321,501 + -0.9 321,501 + +0.5 321,501 + -1.5 321,502 - -1.0 321,522 + +1.1 321,522 + -0.3 321,522 + +0.4 321,522 + +0.7 321,523 - -0.5 321,523 - +0.9 321,523 - +0.1 322,284 + MPMX19_04026 0.78 -1.4 322,284 + MPMX19_04026 0.78 +0.1 322,285 - MPMX19_04026 0.78 -0.5 322,285 - MPMX19_04026 0.78 +0.3 322,316 + MPMX19_04026 0.82 -0.3 322,316 + MPMX19_04026 0.82 -0.6 322,316 + MPMX19_04026 0.82 -1.2 322,316 + MPMX19_04026 0.82 -0.6 322,316 + MPMX19_04026 0.82 -0.1 322,316 + MPMX19_04026 0.82 +0.4 322,316 + MPMX19_04026 0.82 -0.6 322,316 + MPMX19_04026 0.82 +0.2 322,316 + MPMX19_04026 0.82 -1.1 322,317 - MPMX19_04026 0.82 -2.0 322,317 - MPMX19_04026 0.82 +0.0 322,317 - MPMX19_04026 0.82 -2.2 322,317 - MPMX19_04026 0.82 -0.8 322,317 - MPMX19_04026 0.82 -1.8 322,317 - MPMX19_04026 0.82 -0.7 322,317 - MPMX19_04026 0.82 -1.3 322,409 + -0.3 322,410 - -0.3 322,410 - +0.4 322,410 - +1.1 322,472 + -1.4 322,472 + +0.1 322,472 + +0.9 322,473 - -1.3 322,473 - +1.3 322,485 + -1.3 322,486 - -0.3 322,535 + +1.1 322,535 + +1.0 322,536 - -0.2 322,603 - +1.0 322,630 + -0.5 322,642 - +0.7 322,671 + -1.2 322,671 + -0.5 322,671 + -0.5 322,672 - -0.2 322,672 - -0.3 322,672 - -0.9 323,319 - MPMX19_04027 0.87 -1.8 323,410 + +0.9 323,410 + +1.4 323,410 + -0.7 323,411 - +0.5 323,415 + -1.0 323,415 + -0.3 323,415 + +0.1 323,416 - +0.5 323,416 - -0.4 323,416 - -0.9
Or see this region's nucleotide sequence