Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03979 and MPMX19_03980 are separated by 165 nucleotides MPMX19_03980 and MPMX19_03981 are separated by 49 nucleotides MPMX19_03981 and MPMX19_03982 are separated by 282 nucleotides
MPMX19_03979: MPMX19_03979 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 269,736 to 271,187
_03979
MPMX19_03980: MPMX19_03980 - Sensor protein FixL, at 271,353 to 273,155
_03980
MPMX19_03981: MPMX19_03981 - hypothetical protein, at 273,205 to 273,441
_03981
MPMX19_03982: MPMX19_03982 - tRNA-Ser, at 273,724 to 273,816
_03982
Position (kb) 271
272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.287 kb on - strand at 271.428 kb on + strand at 271.429 kb on - strand at 271.429 kb on - strand at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.746 kb on + strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.747 kb on - strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.752 kb on + strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.753 kb on - strand, within MPMX19_03980 at 271.758 kb on + strand, within MPMX19_03980 at 271.758 kb on + strand, within MPMX19_03980 at 271.758 kb on + strand, within MPMX19_03980 at 271.759 kb on - strand, within MPMX19_03980 at 271.759 kb on - strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.845 kb on + strand, within MPMX19_03980 at 271.846 kb on - strand, within MPMX19_03980 at 271.945 kb on + strand, within MPMX19_03980 at 272.058 kb on + strand, within MPMX19_03980 at 272.058 kb on + strand, within MPMX19_03980 at 272.058 kb on + strand, within MPMX19_03980 at 272.059 kb on - strand, within MPMX19_03980 at 272.059 kb on - strand, within MPMX19_03980 at 272.059 kb on - strand, within MPMX19_03980 at 272.226 kb on + strand, within MPMX19_03980 at 272.226 kb on + strand, within MPMX19_03980 at 272.226 kb on + strand, within MPMX19_03980 at 272.226 kb on + strand, within MPMX19_03980 at 272.226 kb on + strand, within MPMX19_03980 at 272.226 kb on + strand, within MPMX19_03980 at 272.227 kb on - strand, within MPMX19_03980 at 272.227 kb on - strand, within MPMX19_03980 at 272.227 kb on - strand, within MPMX19_03980 at 272.227 kb on - strand, within MPMX19_03980 at 272.227 kb on - strand, within MPMX19_03980 at 272.227 kb on - strand, within MPMX19_03980 at 272.227 kb on - strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.634 kb on + strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.635 kb on - strand, within MPMX19_03980 at 272.637 kb on - strand, within MPMX19_03980 at 272.637 kb on - strand, within MPMX19_03980 at 272.637 kb on - strand, within MPMX19_03980 at 272.790 kb on + strand, within MPMX19_03980 at 272.790 kb on + strand, within MPMX19_03980 at 272.790 kb on + strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 273.539 kb on + strand at 273.540 kb on - strand at 273.540 kb on - strand at 273.540 kb on - strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.647 kb on + strand at 273.647 kb on + strand at 273.856 kb on - strand at 273.856 kb on - strand at 273.898 kb on + strand at 273.898 kb on + strand at 273.898 kb on + strand at 273.899 kb on - strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.975 kb on - strand at 273.995 kb on + strand at 273.995 kb on + strand at 273.995 kb on + strand at 273.995 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 271,287 - +0.5 271,428 + +0.9 271,429 - -0.6 271,429 - +0.3 271,746 + MPMX19_03980 0.22 -1.1 271,746 + MPMX19_03980 0.22 +0.4 271,746 + MPMX19_03980 0.22 -0.4 271,746 + MPMX19_03980 0.22 -2.1 271,746 + MPMX19_03980 0.22 +0.8 271,746 + MPMX19_03980 0.22 -0.6 271,747 - MPMX19_03980 0.22 -0.1 271,747 - MPMX19_03980 0.22 -0.1 271,747 - MPMX19_03980 0.22 -1.1 271,747 - MPMX19_03980 0.22 -2.8 271,752 + MPMX19_03980 0.22 -0.6 271,752 + MPMX19_03980 0.22 -0.1 271,752 + MPMX19_03980 0.22 -1.2 271,752 + MPMX19_03980 0.22 -0.8 271,753 - MPMX19_03980 0.22 -1.3 271,753 - MPMX19_03980 0.22 -0.7 271,753 - MPMX19_03980 0.22 -2.9 271,753 - MPMX19_03980 0.22 -0.6 271,758 + MPMX19_03980 0.22 -0.8 271,758 + MPMX19_03980 0.22 -1.0 271,758 + MPMX19_03980 0.22 +0.8 271,759 - MPMX19_03980 0.23 -1.8 271,759 - MPMX19_03980 0.23 +0.5 271,845 + MPMX19_03980 0.27 +0.7 271,845 + MPMX19_03980 0.27 -0.5 271,845 + MPMX19_03980 0.27 -0.1 271,845 + MPMX19_03980 0.27 -1.3 271,846 - MPMX19_03980 0.27 +0.7 271,945 + MPMX19_03980 0.33 -1.6 272,058 + MPMX19_03980 0.39 +2.7 272,058 + MPMX19_03980 0.39 -0.9 272,058 + MPMX19_03980 0.39 +0.2 272,059 - MPMX19_03980 0.39 -0.5 272,059 - MPMX19_03980 0.39 -0.2 272,059 - MPMX19_03980 0.39 +0.5 272,226 + MPMX19_03980 0.48 -2.0 272,226 + MPMX19_03980 0.48 -1.1 272,226 + MPMX19_03980 0.48 +0.0 272,226 + MPMX19_03980 0.48 -0.0 272,226 + MPMX19_03980 0.48 -0.6 272,226 + MPMX19_03980 0.48 -0.2 272,227 - MPMX19_03980 0.48 -1.7 272,227 - MPMX19_03980 0.48 -1.0 272,227 - MPMX19_03980 0.48 +0.1 272,227 - MPMX19_03980 0.48 -1.3 272,227 - MPMX19_03980 0.48 -0.6 272,227 - MPMX19_03980 0.48 -1.0 272,227 - MPMX19_03980 0.48 -1.7 272,634 + MPMX19_03980 0.71 +0.1 272,634 + MPMX19_03980 0.71 -0.1 272,634 + MPMX19_03980 0.71 +1.4 272,634 + MPMX19_03980 0.71 -0.8 272,634 + MPMX19_03980 0.71 -1.1 272,634 + MPMX19_03980 0.71 +0.1 272,634 + MPMX19_03980 0.71 -0.1 272,634 + MPMX19_03980 0.71 +0.1 272,634 + MPMX19_03980 0.71 -1.9 272,634 + MPMX19_03980 0.71 -0.5 272,634 + MPMX19_03980 0.71 -0.8 272,634 + MPMX19_03980 0.71 -2.7 272,635 - MPMX19_03980 0.71 +0.1 272,635 - MPMX19_03980 0.71 +0.2 272,635 - MPMX19_03980 0.71 +0.2 272,635 - MPMX19_03980 0.71 -2.0 272,635 - MPMX19_03980 0.71 -0.0 272,635 - MPMX19_03980 0.71 -0.2 272,635 - MPMX19_03980 0.71 -0.4 272,635 - MPMX19_03980 0.71 -1.7 272,635 - MPMX19_03980 0.71 +0.9 272,635 - MPMX19_03980 0.71 +0.4 272,635 - MPMX19_03980 0.71 +0.1 272,635 - MPMX19_03980 0.71 +0.2 272,637 - MPMX19_03980 0.71 -1.6 272,637 - MPMX19_03980 0.71 -0.0 272,637 - MPMX19_03980 0.71 -0.8 272,790 + MPMX19_03980 0.80 -2.3 272,790 + MPMX19_03980 0.80 -0.3 272,790 + MPMX19_03980 0.80 +0.1 272,791 - MPMX19_03980 0.80 +0.4 272,791 - MPMX19_03980 0.80 -1.1 272,791 - MPMX19_03980 0.80 +0.5 273,539 + -0.3 273,540 - +0.3 273,540 - +0.7 273,540 - -0.8 273,559 + -0.6 273,559 + -0.6 273,559 + +0.5 273,559 + -1.0 273,559 + +0.1 273,559 + -1.5 273,559 + -0.5 273,560 - -0.8 273,560 - +0.3 273,560 - -0.9 273,560 - -0.3 273,560 - -0.5 273,560 - -1.6 273,560 - +0.3 273,560 - +0.3 273,560 - -0.3 273,560 - +0.7 273,647 + -0.4 273,647 + -0.5 273,856 - -0.6 273,856 - -0.3 273,898 + +0.5 273,898 + -1.6 273,898 + -0.5 273,899 - +0.7 273,974 + -1.3 273,974 + -1.0 273,974 + -0.3 273,974 + -0.0 273,974 + -0.9 273,975 - +0.0 273,995 + +0.9 273,995 + -0.8 273,995 + -1.2 273,995 + -0.1 274,027 + -1.8 274,027 + +0.2 274,027 + -1.3 274,027 + -0.0 274,027 + -1.1 274,028 - -1.3 274,028 - -0.9 274,028 - +0.3 274,028 - -0.5 274,028 - +0.7 274,028 - -0.0 274,082 + -1.3 274,082 + -0.5 274,082 + +0.7 274,082 + -1.4 274,083 - -0.8 274,083 - -0.4 274,083 - +0.7 274,083 - -0.5
Or see this region's nucleotide sequence