Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03910 and MPMX19_03911 are separated by 58 nucleotides MPMX19_03911 and MPMX19_03912 are separated by 111 nucleotides
MPMX19_03910: MPMX19_03910 - hypothetical protein, at 186,870 to 188,633
_03910
MPMX19_03911: MPMX19_03911 - Crotonobetaine/carnitine--CoA ligase, at 188,692 to 190,230
_03911
MPMX19_03912: MPMX19_03912 - 6-deoxy-6-sulfogluconolactonase, at 190,342 to 191,256
_03912
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.704 kb on + strand, within MPMX19_03910 at 187.705 kb on - strand, within MPMX19_03910 at 187.705 kb on - strand, within MPMX19_03910 at 187.705 kb on - strand, within MPMX19_03910 at 187.705 kb on - strand, within MPMX19_03910 at 187.705 kb on - strand, within MPMX19_03910 at 187.705 kb on - strand, within MPMX19_03910 at 187.705 kb on - strand, within MPMX19_03910 at 187.887 kb on + strand, within MPMX19_03910 at 187.887 kb on + strand, within MPMX19_03910 at 187.887 kb on + strand, within MPMX19_03910 at 187.887 kb on + strand, within MPMX19_03910 at 187.887 kb on + strand, within MPMX19_03910 at 187.888 kb on - strand, within MPMX19_03910 at 187.888 kb on - strand, within MPMX19_03910 at 187.888 kb on - strand, within MPMX19_03910 at 187.888 kb on - strand, within MPMX19_03910 at 187.987 kb on - strand, within MPMX19_03910 at 187.987 kb on - strand, within MPMX19_03910 at 187.987 kb on - strand, within MPMX19_03910 at 188.010 kb on + strand, within MPMX19_03910 at 188.010 kb on + strand, within MPMX19_03910 at 188.010 kb on + strand, within MPMX19_03910 at 188.010 kb on + strand, within MPMX19_03910 at 188.011 kb on - strand, within MPMX19_03910 at 188.011 kb on - strand, within MPMX19_03910 at 188.211 kb on + strand, within MPMX19_03910 at 188.211 kb on + strand, within MPMX19_03910 at 188.211 kb on + strand, within MPMX19_03910 at 188.211 kb on + strand, within MPMX19_03910 at 188.211 kb on + strand, within MPMX19_03910 at 188.212 kb on - strand, within MPMX19_03910 at 188.212 kb on - strand, within MPMX19_03910 at 188.212 kb on - strand, within MPMX19_03910 at 188.212 kb on - strand, within MPMX19_03910 at 188.212 kb on - strand, within MPMX19_03910 at 188.267 kb on + strand, within MPMX19_03910 at 188.770 kb on + strand at 188.770 kb on + strand at 188.770 kb on + strand at 188.771 kb on - strand at 188.771 kb on - strand at 188.771 kb on - strand at 188.771 kb on - strand at 188.980 kb on + strand, within MPMX19_03911 at 188.980 kb on + strand, within MPMX19_03911 at 188.980 kb on + strand, within MPMX19_03911 at 188.981 kb on - strand, within MPMX19_03911 at 188.982 kb on + strand, within MPMX19_03911 at 188.982 kb on + strand, within MPMX19_03911 at 188.983 kb on - strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.193 kb on + strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.194 kb on - strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.325 kb on + strand, within MPMX19_03911 at 189.326 kb on - strand, within MPMX19_03911 at 189.326 kb on - strand, within MPMX19_03911 at 189.326 kb on - strand, within MPMX19_03911 at 189.326 kb on - strand, within MPMX19_03911 at 189.433 kb on + strand, within MPMX19_03911 at 189.433 kb on + strand, within MPMX19_03911 at 189.433 kb on + strand, within MPMX19_03911 at 189.454 kb on + strand, within MPMX19_03911 at 189.454 kb on + strand, within MPMX19_03911 at 189.454 kb on + strand, within MPMX19_03911 at 189.455 kb on - strand, within MPMX19_03911 at 189.455 kb on - strand, within MPMX19_03911 at 189.604 kb on + strand, within MPMX19_03911 at 189.604 kb on + strand, within MPMX19_03911 at 189.604 kb on + strand, within MPMX19_03911 at 189.604 kb on + strand, within MPMX19_03911 at 189.604 kb on + strand, within MPMX19_03911 at 189.605 kb on - strand, within MPMX19_03911 at 189.605 kb on - strand, within MPMX19_03911 at 189.605 kb on - strand, within MPMX19_03911 at 189.651 kb on + strand, within MPMX19_03911 at 189.762 kb on + strand, within MPMX19_03911 at 189.788 kb on - strand, within MPMX19_03911 at 189.788 kb on - strand, within MPMX19_03911 at 189.788 kb on - strand, within MPMX19_03911 at 189.788 kb on - strand, within MPMX19_03911 at 189.788 kb on - strand, within MPMX19_03911 at 190.123 kb on + strand at 190.123 kb on + strand at 190.123 kb on + strand at 190.123 kb on + strand at 190.123 kb on + strand at 190.123 kb on + strand at 190.123 kb on + strand at 190.123 kb on + strand at 190.123 kb on + strand at 190.124 kb on - strand at 190.124 kb on - strand at 190.124 kb on - strand at 190.124 kb on - strand at 190.124 kb on - strand at 190.124 kb on - strand at 190.124 kb on - strand at 190.228 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.281 kb on + strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.282 kb on - strand at 190.589 kb on + strand, within MPMX19_03912 at 190.589 kb on + strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.590 kb on - strand, within MPMX19_03912 at 190.691 kb on + strand, within MPMX19_03912 at 190.691 kb on + strand, within MPMX19_03912 at 190.692 kb on - strand, within MPMX19_03912 at 190.740 kb on - strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.829 kb on + strand, within MPMX19_03912 at 190.830 kb on - strand, within MPMX19_03912 at 190.830 kb on - strand, within MPMX19_03912 at 190.830 kb on - strand, within MPMX19_03912 at 190.836 kb on - strand, within MPMX19_03912
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 187,704 + MPMX19_03910 0.47 +2.0 187,704 + MPMX19_03910 0.47 -0.4 187,704 + MPMX19_03910 0.47 +0.8 187,704 + MPMX19_03910 0.47 +0.1 187,704 + MPMX19_03910 0.47 -1.9 187,704 + MPMX19_03910 0.47 +0.7 187,704 + MPMX19_03910 0.47 -0.3 187,704 + MPMX19_03910 0.47 +0.3 187,704 + MPMX19_03910 0.47 -1.1 187,704 + MPMX19_03910 0.47 -1.1 187,705 - MPMX19_03910 0.47 -0.6 187,705 - MPMX19_03910 0.47 -0.4 187,705 - MPMX19_03910 0.47 +0.1 187,705 - MPMX19_03910 0.47 +0.4 187,705 - MPMX19_03910 0.47 -1.1 187,705 - MPMX19_03910 0.47 +0.8 187,705 - MPMX19_03910 0.47 +0.2 187,887 + MPMX19_03910 0.58 +1.4 187,887 + MPMX19_03910 0.58 -2.2 187,887 + MPMX19_03910 0.58 +0.6 187,887 + MPMX19_03910 0.58 -2.1 187,887 + MPMX19_03910 0.58 -1.6 187,888 - MPMX19_03910 0.58 -0.4 187,888 - MPMX19_03910 0.58 -1.2 187,888 - MPMX19_03910 0.58 -0.8 187,888 - MPMX19_03910 0.58 -0.7 187,987 - MPMX19_03910 0.63 +0.3 187,987 - MPMX19_03910 0.63 -2.7 187,987 - MPMX19_03910 0.63 +2.7 188,010 + MPMX19_03910 0.65 -0.4 188,010 + MPMX19_03910 0.65 -0.6 188,010 + MPMX19_03910 0.65 -0.3 188,010 + MPMX19_03910 0.65 -1.6 188,011 - MPMX19_03910 0.65 +1.1 188,011 - MPMX19_03910 0.65 +0.9 188,211 + MPMX19_03910 0.76 +0.5 188,211 + MPMX19_03910 0.76 -0.4 188,211 + MPMX19_03910 0.76 -0.9 188,211 + MPMX19_03910 0.76 -0.5 188,211 + MPMX19_03910 0.76 -1.4 188,212 - MPMX19_03910 0.76 +0.1 188,212 - MPMX19_03910 0.76 +2.0 188,212 - MPMX19_03910 0.76 -0.9 188,212 - MPMX19_03910 0.76 -1.4 188,212 - MPMX19_03910 0.76 -1.0 188,267 + MPMX19_03910 0.79 +0.1 188,770 + -0.5 188,770 + +0.6 188,770 + -2.3 188,771 - -0.3 188,771 - -1.1 188,771 - -1.9 188,771 - +0.4 188,980 + MPMX19_03911 0.19 -1.9 188,980 + MPMX19_03911 0.19 -0.9 188,980 + MPMX19_03911 0.19 -0.4 188,981 - MPMX19_03911 0.19 -0.3 188,982 + MPMX19_03911 0.19 +0.5 188,982 + MPMX19_03911 0.19 -2.1 188,983 - MPMX19_03911 0.19 -0.4 189,193 + MPMX19_03911 0.33 -0.4 189,193 + MPMX19_03911 0.33 -0.5 189,193 + MPMX19_03911 0.33 +0.9 189,193 + MPMX19_03911 0.33 -0.6 189,193 + MPMX19_03911 0.33 -0.6 189,193 + MPMX19_03911 0.33 -1.6 189,193 + MPMX19_03911 0.33 -1.1 189,193 + MPMX19_03911 0.33 -0.2 189,193 + MPMX19_03911 0.33 +0.0 189,193 + MPMX19_03911 0.33 -0.9 189,193 + MPMX19_03911 0.33 +0.1 189,193 + MPMX19_03911 0.33 -0.3 189,193 + MPMX19_03911 0.33 -2.1 189,193 + MPMX19_03911 0.33 -0.9 189,194 - MPMX19_03911 0.33 -0.2 189,194 - MPMX19_03911 0.33 +0.3 189,194 - MPMX19_03911 0.33 +1.7 189,194 - MPMX19_03911 0.33 -0.7 189,194 - MPMX19_03911 0.33 +0.7 189,194 - MPMX19_03911 0.33 +0.3 189,194 - MPMX19_03911 0.33 +0.1 189,194 - MPMX19_03911 0.33 -0.2 189,194 - MPMX19_03911 0.33 -1.3 189,194 - MPMX19_03911 0.33 -0.5 189,194 - MPMX19_03911 0.33 -1.9 189,194 - MPMX19_03911 0.33 -2.0 189,194 - MPMX19_03911 0.33 -1.1 189,325 + MPMX19_03911 0.41 +0.4 189,325 + MPMX19_03911 0.41 -1.6 189,325 + MPMX19_03911 0.41 -1.0 189,325 + MPMX19_03911 0.41 -0.4 189,325 + MPMX19_03911 0.41 -1.0 189,325 + MPMX19_03911 0.41 -0.3 189,325 + MPMX19_03911 0.41 -1.9 189,325 + MPMX19_03911 0.41 -1.0 189,326 - MPMX19_03911 0.41 -2.1 189,326 - MPMX19_03911 0.41 +0.3 189,326 - MPMX19_03911 0.41 -0.4 189,326 - MPMX19_03911 0.41 -2.2 189,433 + MPMX19_03911 0.48 +1.0 189,433 + MPMX19_03911 0.48 +0.1 189,433 + MPMX19_03911 0.48 -0.5 189,454 + MPMX19_03911 0.50 +1.0 189,454 + MPMX19_03911 0.50 -0.3 189,454 + MPMX19_03911 0.50 -0.3 189,455 - MPMX19_03911 0.50 -0.3 189,455 - MPMX19_03911 0.50 -1.4 189,604 + MPMX19_03911 0.59 -1.1 189,604 + MPMX19_03911 0.59 -0.9 189,604 + MPMX19_03911 0.59 -1.5 189,604 + MPMX19_03911 0.59 -0.4 189,604 + MPMX19_03911 0.59 -0.9 189,605 - MPMX19_03911 0.59 -0.3 189,605 - MPMX19_03911 0.59 +0.4 189,605 - MPMX19_03911 0.59 +0.6 189,651 + MPMX19_03911 0.62 -0.1 189,762 + MPMX19_03911 0.70 -2.2 189,788 - MPMX19_03911 0.71 -1.3 189,788 - MPMX19_03911 0.71 -1.4 189,788 - MPMX19_03911 0.71 -0.2 189,788 - MPMX19_03911 0.71 -0.7 189,788 - MPMX19_03911 0.71 -0.2 190,123 + -0.4 190,123 + +0.4 190,123 + -1.4 190,123 + -1.9 190,123 + +0.3 190,123 + -1.7 190,123 + -1.9 190,123 + -0.5 190,123 + +0.6 190,124 - -1.4 190,124 - -1.6 190,124 - -0.8 190,124 - -1.1 190,124 - +0.4 190,124 - -0.9 190,124 - -1.2 190,228 + +0.2 190,281 + -0.4 190,281 + -0.1 190,281 + -0.3 190,281 + -0.3 190,281 + +0.9 190,281 + -0.8 190,281 + -0.8 190,281 + +0.7 190,281 + +0.1 190,282 - -1.5 190,282 - -0.3 190,282 - -1.7 190,282 - -1.4 190,282 - -0.3 190,282 - -0.8 190,282 - -0.8 190,589 + MPMX19_03912 0.27 +0.2 190,589 + MPMX19_03912 0.27 -0.6 190,590 - MPMX19_03912 0.27 +0.5 190,590 - MPMX19_03912 0.27 -0.4 190,590 - MPMX19_03912 0.27 -0.4 190,590 - MPMX19_03912 0.27 -0.9 190,590 - MPMX19_03912 0.27 +0.7 190,691 + MPMX19_03912 0.38 -0.7 190,691 + MPMX19_03912 0.38 -1.1 190,692 - MPMX19_03912 0.38 -0.4 190,740 - MPMX19_03912 0.43 -0.3 190,829 + MPMX19_03912 0.53 -0.3 190,829 + MPMX19_03912 0.53 -1.3 190,829 + MPMX19_03912 0.53 -1.2 190,829 + MPMX19_03912 0.53 -0.2 190,830 - MPMX19_03912 0.53 +0.2 190,830 - MPMX19_03912 0.53 -0.5 190,830 - MPMX19_03912 0.53 -0.3 190,836 - MPMX19_03912 0.54 -0.2
Or see this region's nucleotide sequence