Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03841 and MPMX19_03842 are separated by 2 nucleotides MPMX19_03842 and MPMX19_03843 are separated by 150 nucleotides MPMX19_03843 and MPMX19_03844 are separated by 176 nucleotides MPMX19_03844 and MPMX19_03845 are separated by 170 nucleotides
MPMX19_03841: MPMX19_03841 - 50S ribosomal protein L13, at 78,978 to 79,442
_03841
MPMX19_03842: MPMX19_03842 - 30S ribosomal protein S9, at 79,445 to 79,933
_03842
MPMX19_03843: MPMX19_03843 - N-acetyl-gamma-glutamyl-phosphate reductase, at 80,084 to 81,160
_03843
MPMX19_03844: MPMX19_03844 - Protein YrdA, at 81,337 to 81,873
_03844
MPMX19_03845: MPMX19_03845 - Peptidoglycan-associated lipoprotein, at 82,044 to 82,655
_03845
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.025 kb on + strand at 81.179 kb on + strand at 81.179 kb on + strand at 81.180 kb on - strand at 81.283 kb on + strand at 81.284 kb on - strand at 81.284 kb on - strand at 81.284 kb on - strand at 81.290 kb on + strand at 81.457 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.562 kb on + strand, within MPMX19_03844 at 81.563 kb on - strand, within MPMX19_03844 at 81.563 kb on - strand, within MPMX19_03844 at 81.563 kb on - strand, within MPMX19_03844 at 81.563 kb on - strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.667 kb on + strand, within MPMX19_03844 at 81.668 kb on - strand, within MPMX19_03844 at 81.668 kb on - strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.726 kb on + strand, within MPMX19_03844 at 81.727 kb on - strand, within MPMX19_03844 at 81.727 kb on - strand, within MPMX19_03844 at 81.727 kb on - strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.759 kb on + strand, within MPMX19_03844 at 81.777 kb on + strand, within MPMX19_03844 at 81.777 kb on + strand, within MPMX19_03844 at 81.820 kb on + strand at 81.820 kb on + strand at 81.820 kb on + strand at 81.822 kb on + strand at 81.822 kb on + strand at 81.856 kb on + strand at 81.856 kb on + strand at 81.856 kb on + strand at 81.856 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.871 kb on + strand at 81.881 kb on + strand at 81.881 kb on + strand at 81.881 kb on + strand at 81.986 kb on + strand at 81.986 kb on + strand at 81.986 kb on + strand at 81.986 kb on + strand at 81.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 80,025 + -1.1 81,179 + -0.0 81,179 + +0.4 81,180 - -2.1 81,283 + -0.6 81,284 - -0.8 81,284 - +0.3 81,284 - -0.4 81,290 + -1.1 81,457 + MPMX19_03844 0.22 -1.0 81,562 + MPMX19_03844 0.42 -1.0 81,562 + MPMX19_03844 0.42 +0.0 81,562 + MPMX19_03844 0.42 -0.9 81,562 + MPMX19_03844 0.42 -0.9 81,562 + MPMX19_03844 0.42 +0.2 81,562 + MPMX19_03844 0.42 -0.5 81,562 + MPMX19_03844 0.42 -0.9 81,562 + MPMX19_03844 0.42 -2.0 81,562 + MPMX19_03844 0.42 +1.5 81,562 + MPMX19_03844 0.42 -1.6 81,562 + MPMX19_03844 0.42 +0.0 81,562 + MPMX19_03844 0.42 +0.2 81,562 + MPMX19_03844 0.42 -0.0 81,562 + MPMX19_03844 0.42 +1.4 81,562 + MPMX19_03844 0.42 -1.0 81,563 - MPMX19_03844 0.42 -1.3 81,563 - MPMX19_03844 0.42 -0.8 81,563 - MPMX19_03844 0.42 -1.4 81,563 - MPMX19_03844 0.42 -0.2 81,667 + MPMX19_03844 0.61 -0.3 81,667 + MPMX19_03844 0.61 -2.7 81,667 + MPMX19_03844 0.61 +0.1 81,667 + MPMX19_03844 0.61 -2.0 81,667 + MPMX19_03844 0.61 -1.0 81,667 + MPMX19_03844 0.61 -1.2 81,667 + MPMX19_03844 0.61 -1.7 81,667 + MPMX19_03844 0.61 -0.9 81,667 + MPMX19_03844 0.61 -0.6 81,667 + MPMX19_03844 0.61 +0.4 81,667 + MPMX19_03844 0.61 -1.3 81,667 + MPMX19_03844 0.61 -0.5 81,668 - MPMX19_03844 0.62 +0.1 81,668 - MPMX19_03844 0.62 +0.3 81,726 + MPMX19_03844 0.72 -1.8 81,726 + MPMX19_03844 0.72 -0.0 81,726 + MPMX19_03844 0.72 -0.3 81,726 + MPMX19_03844 0.72 -0.9 81,726 + MPMX19_03844 0.72 -0.6 81,726 + MPMX19_03844 0.72 -0.3 81,726 + MPMX19_03844 0.72 -0.5 81,726 + MPMX19_03844 0.72 -0.1 81,726 + MPMX19_03844 0.72 -1.1 81,726 + MPMX19_03844 0.72 -0.3 81,726 + MPMX19_03844 0.72 -0.5 81,726 + MPMX19_03844 0.72 -1.2 81,727 - MPMX19_03844 0.73 -0.7 81,727 - MPMX19_03844 0.73 +0.1 81,727 - MPMX19_03844 0.73 -1.7 81,759 + MPMX19_03844 0.79 +0.1 81,759 + MPMX19_03844 0.79 -1.1 81,759 + MPMX19_03844 0.79 -1.3 81,759 + MPMX19_03844 0.79 +1.1 81,759 + MPMX19_03844 0.79 -0.3 81,759 + MPMX19_03844 0.79 -1.9 81,759 + MPMX19_03844 0.79 -1.6 81,759 + MPMX19_03844 0.79 -2.0 81,777 + MPMX19_03844 0.82 -1.6 81,777 + MPMX19_03844 0.82 +0.7 81,820 + -1.0 81,820 + +0.1 81,820 + +0.3 81,822 + -1.3 81,822 + -0.6 81,856 + +0.1 81,856 + +0.1 81,856 + +0.0 81,856 + -1.4 81,871 + -0.3 81,871 + -0.7 81,871 + -2.4 81,871 + -1.9 81,871 + +1.7 81,871 + -2.2 81,871 + -0.4 81,871 + -0.8 81,871 + -0.3 81,871 + -0.2 81,871 + -2.9 81,881 + +0.5 81,881 + -0.0 81,881 + -0.4 81,986 + +0.6 81,986 + -0.2 81,986 + -1.5 81,986 + -1.2 81,986 + -0.6
Or see this region's nucleotide sequence