Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03359 and MPMX19_03360 overlap by 4 nucleotides MPMX19_03360 and MPMX19_03361 are separated by 31 nucleotides MPMX19_03361 and MPMX19_03362 are separated by 56 nucleotides
MPMX19_03359: MPMX19_03359 - hypothetical protein, at 732,955 to 733,701
_03359
MPMX19_03360: MPMX19_03360 - hypothetical protein, at 733,698 to 734,111
_03360
MPMX19_03361: MPMX19_03361 - hypothetical protein, at 734,143 to 735,297
_03361
MPMX19_03362: MPMX19_03362 - ABC transporter ATP-binding/permease protein YojI, at 735,354 to 737,027
_03362
Position (kb) 734
735
736 Strain fitness (log2 ratio) -2
-1
0
1
2 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.181 kb on + strand, within MPMX19_03359 at 733.182 kb on - strand, within MPMX19_03359 at 733.182 kb on - strand, within MPMX19_03359 at 733.182 kb on - strand, within MPMX19_03359 at 733.182 kb on - strand, within MPMX19_03359 at 733.184 kb on + strand, within MPMX19_03359 at 733.184 kb on + strand, within MPMX19_03359 at 733.184 kb on + strand, within MPMX19_03359 at 733.184 kb on + strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.185 kb on - strand, within MPMX19_03359 at 733.209 kb on + strand, within MPMX19_03359 at 733.210 kb on - strand, within MPMX19_03359 at 733.210 kb on - strand, within MPMX19_03359 at 733.210 kb on - strand, within MPMX19_03359 at 733.289 kb on + strand, within MPMX19_03359 at 733.289 kb on + strand, within MPMX19_03359 at 733.289 kb on + strand, within MPMX19_03359 at 733.289 kb on + strand, within MPMX19_03359 at 733.289 kb on + strand, within MPMX19_03359 at 733.289 kb on + strand, within MPMX19_03359 at 733.289 kb on + strand, within MPMX19_03359 at 733.290 kb on - strand, within MPMX19_03359 at 733.290 kb on - strand, within MPMX19_03359 at 733.290 kb on - strand, within MPMX19_03359 at 733.296 kb on - strand, within MPMX19_03359 at 733.296 kb on - strand, within MPMX19_03359 at 733.296 kb on - strand, within MPMX19_03359 at 733.319 kb on + strand, within MPMX19_03359 at 733.319 kb on + strand, within MPMX19_03359 at 733.319 kb on + strand, within MPMX19_03359 at 733.319 kb on + strand, within MPMX19_03359 at 733.319 kb on + strand, within MPMX19_03359 at 733.320 kb on - strand, within MPMX19_03359 at 733.320 kb on - strand, within MPMX19_03359 at 733.320 kb on - strand, within MPMX19_03359 at 733.320 kb on - strand, within MPMX19_03359 at 733.320 kb on - strand, within MPMX19_03359 at 733.328 kb on + strand, within MPMX19_03359 at 733.329 kb on - strand, within MPMX19_03359 at 733.487 kb on + strand, within MPMX19_03359 at 733.487 kb on + strand, within MPMX19_03359 at 733.487 kb on + strand, within MPMX19_03359 at 733.487 kb on + strand, within MPMX19_03359 at 733.487 kb on + strand, within MPMX19_03359 at 733.487 kb on + strand, within MPMX19_03359 at 733.488 kb on - strand, within MPMX19_03359 at 733.488 kb on - strand, within MPMX19_03359 at 733.575 kb on - strand, within MPMX19_03359 at 733.587 kb on - strand, within MPMX19_03359 at 733.587 kb on - strand, within MPMX19_03359 at 733.701 kb on + strand at 733.701 kb on + strand at 733.701 kb on + strand at 733.702 kb on - strand at 733.702 kb on - strand at 733.702 kb on - strand at 733.720 kb on + strand at 733.720 kb on + strand at 733.720 kb on + strand at 733.720 kb on + strand at 733.720 kb on + strand at 733.720 kb on + strand at 733.720 kb on + strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.721 kb on - strand at 733.765 kb on + strand, within MPMX19_03360 at 733.765 kb on + strand, within MPMX19_03360 at 733.765 kb on + strand, within MPMX19_03360 at 733.765 kb on + strand, within MPMX19_03360 at 733.765 kb on + strand, within MPMX19_03360 at 733.765 kb on + strand, within MPMX19_03360 at 733.765 kb on + strand, within MPMX19_03360 at 733.765 kb on + strand, within MPMX19_03360 at 733.766 kb on - strand, within MPMX19_03360 at 733.766 kb on - strand, within MPMX19_03360 at 733.766 kb on - strand, within MPMX19_03360 at 733.766 kb on - strand, within MPMX19_03360 at 734.255 kb on + strand at 734.255 kb on + strand at 734.255 kb on + strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.256 kb on - strand at 734.342 kb on + strand, within MPMX19_03361 at 734.342 kb on + strand, within MPMX19_03361 at 734.342 kb on + strand, within MPMX19_03361 at 734.342 kb on + strand, within MPMX19_03361 at 734.342 kb on + strand, within MPMX19_03361 at 734.342 kb on + strand, within MPMX19_03361 at 734.343 kb on - strand, within MPMX19_03361 at 734.343 kb on - strand, within MPMX19_03361 at 734.343 kb on - strand, within MPMX19_03361 at 734.398 kb on + strand, within MPMX19_03361 at 734.399 kb on - strand, within MPMX19_03361 at 734.399 kb on - strand, within MPMX19_03361 at 734.406 kb on - strand, within MPMX19_03361 at 734.459 kb on + strand, within MPMX19_03361 at 734.459 kb on + strand, within MPMX19_03361 at 734.549 kb on + strand, within MPMX19_03361 at 734.549 kb on + strand, within MPMX19_03361 at 734.550 kb on - strand, within MPMX19_03361 at 734.816 kb on + strand, within MPMX19_03361 at 734.816 kb on + strand, within MPMX19_03361 at 734.816 kb on + strand, within MPMX19_03361 at 734.816 kb on + strand, within MPMX19_03361 at 734.817 kb on - strand, within MPMX19_03361 at 734.817 kb on - strand, within MPMX19_03361 at 734.817 kb on - strand, within MPMX19_03361 at 734.817 kb on - strand, within MPMX19_03361 at 734.817 kb on - strand, within MPMX19_03361 at 735.015 kb on + strand, within MPMX19_03361 at 735.015 kb on + strand, within MPMX19_03361 at 735.015 kb on + strand, within MPMX19_03361 at 735.119 kb on + strand, within MPMX19_03361 at 735.119 kb on + strand, within MPMX19_03361 at 735.120 kb on - strand, within MPMX19_03361 at 735.120 kb on - strand, within MPMX19_03361 at 735.120 kb on - strand, within MPMX19_03361 at 735.120 kb on - strand, within MPMX19_03361 at 735.120 kb on - strand, within MPMX19_03361 at 735.251 kb on + strand at 735.251 kb on + strand at 735.252 kb on - strand at 735.469 kb on + strand at 735.469 kb on + strand at 735.469 kb on + strand at 735.470 kb on - strand at 735.470 kb on - strand at 735.470 kb on - strand at 735.538 kb on + strand, within MPMX19_03362 at 735.539 kb on - strand, within MPMX19_03362 at 735.557 kb on - strand, within MPMX19_03362 at 735.760 kb on + strand, within MPMX19_03362 at 735.761 kb on - strand, within MPMX19_03362 at 735.761 kb on - strand, within MPMX19_03362 at 735.880 kb on + strand, within MPMX19_03362 at 736.130 kb on - strand, within MPMX19_03362 at 736.130 kb on - strand, within MPMX19_03362 at 736.130 kb on - strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.159 kb on + strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.160 kb on - strand, within MPMX19_03362 at 736.168 kb on + strand, within MPMX19_03362 at 736.294 kb on + strand, within MPMX19_03362 at 736.294 kb on + strand, within MPMX19_03362 at 736.297 kb on + strand, within MPMX19_03362 at 736.297 kb on + strand, within MPMX19_03362 at 736.297 kb on + strand, within MPMX19_03362 at 736.297 kb on + strand, within MPMX19_03362 at 736.297 kb on + strand, within MPMX19_03362
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 733,181 + MPMX19_03359 0.30 -0.8 733,181 + MPMX19_03359 0.30 -0.7 733,181 + MPMX19_03359 0.30 -0.5 733,181 + MPMX19_03359 0.30 -1.0 733,181 + MPMX19_03359 0.30 +0.6 733,181 + MPMX19_03359 0.30 -0.5 733,181 + MPMX19_03359 0.30 -0.2 733,181 + MPMX19_03359 0.30 -1.4 733,181 + MPMX19_03359 0.30 -0.3 733,181 + MPMX19_03359 0.30 -1.2 733,182 - MPMX19_03359 0.30 -0.3 733,182 - MPMX19_03359 0.30 +0.5 733,182 - MPMX19_03359 0.30 -0.4 733,182 - MPMX19_03359 0.30 -0.3 733,184 + MPMX19_03359 0.31 +1.0 733,184 + MPMX19_03359 0.31 +0.8 733,184 + MPMX19_03359 0.31 +0.5 733,184 + MPMX19_03359 0.31 +0.3 733,185 - MPMX19_03359 0.31 -1.6 733,185 - MPMX19_03359 0.31 -2.0 733,185 - MPMX19_03359 0.31 -0.1 733,185 - MPMX19_03359 0.31 +0.7 733,185 - MPMX19_03359 0.31 -0.7 733,185 - MPMX19_03359 0.31 +0.6 733,185 - MPMX19_03359 0.31 -1.7 733,185 - MPMX19_03359 0.31 -0.4 733,209 + MPMX19_03359 0.34 -1.2 733,210 - MPMX19_03359 0.34 -1.4 733,210 - MPMX19_03359 0.34 -1.1 733,210 - MPMX19_03359 0.34 +1.2 733,289 + MPMX19_03359 0.45 -0.5 733,289 + MPMX19_03359 0.45 +0.2 733,289 + MPMX19_03359 0.45 -1.8 733,289 + MPMX19_03359 0.45 -1.2 733,289 + MPMX19_03359 0.45 +0.4 733,289 + MPMX19_03359 0.45 +0.4 733,289 + MPMX19_03359 0.45 +0.7 733,290 - MPMX19_03359 0.45 -0.5 733,290 - MPMX19_03359 0.45 -0.8 733,290 - MPMX19_03359 0.45 -0.5 733,296 - MPMX19_03359 0.46 -1.8 733,296 - MPMX19_03359 0.46 -0.7 733,296 - MPMX19_03359 0.46 -0.1 733,319 + MPMX19_03359 0.49 -0.2 733,319 + MPMX19_03359 0.49 +0.2 733,319 + MPMX19_03359 0.49 -0.6 733,319 + MPMX19_03359 0.49 +0.7 733,319 + MPMX19_03359 0.49 +0.4 733,320 - MPMX19_03359 0.49 +0.0 733,320 - MPMX19_03359 0.49 +0.3 733,320 - MPMX19_03359 0.49 -0.5 733,320 - MPMX19_03359 0.49 -2.4 733,320 - MPMX19_03359 0.49 -1.0 733,328 + MPMX19_03359 0.50 -2.2 733,329 - MPMX19_03359 0.50 -0.7 733,487 + MPMX19_03359 0.71 -1.4 733,487 + MPMX19_03359 0.71 -0.2 733,487 + MPMX19_03359 0.71 +0.1 733,487 + MPMX19_03359 0.71 -1.1 733,487 + MPMX19_03359 0.71 -1.3 733,487 + MPMX19_03359 0.71 -0.5 733,488 - MPMX19_03359 0.71 +0.5 733,488 - MPMX19_03359 0.71 -0.1 733,575 - MPMX19_03359 0.83 -1.0 733,587 - MPMX19_03359 0.85 +0.5 733,587 - MPMX19_03359 0.85 -0.8 733,701 + -1.0 733,701 + +0.3 733,701 + +0.4 733,702 - -1.0 733,702 - +0.5 733,702 - -0.6 733,720 + -0.3 733,720 + +0.1 733,720 + +1.0 733,720 + -0.2 733,720 + +0.3 733,720 + +0.3 733,720 + -0.0 733,721 - -1.1 733,721 - -1.7 733,721 - -0.3 733,721 - +0.3 733,721 - -1.8 733,721 - -1.5 733,721 - -0.6 733,721 - -0.9 733,721 - +0.2 733,721 - -0.6 733,721 - -1.0 733,721 - +0.2 733,765 + MPMX19_03360 0.16 +1.3 733,765 + MPMX19_03360 0.16 -1.4 733,765 + MPMX19_03360 0.16 +0.2 733,765 + MPMX19_03360 0.16 +1.0 733,765 + MPMX19_03360 0.16 -0.9 733,765 + MPMX19_03360 0.16 -0.4 733,765 + MPMX19_03360 0.16 -0.2 733,765 + MPMX19_03360 0.16 -1.3 733,766 - MPMX19_03360 0.16 +0.4 733,766 - MPMX19_03360 0.16 +0.3 733,766 - MPMX19_03360 0.16 -0.4 733,766 - MPMX19_03360 0.16 -1.0 734,255 + -0.3 734,255 + +0.5 734,255 + +0.9 734,256 - -1.7 734,256 - -0.7 734,256 - -0.1 734,256 - -1.5 734,256 - +1.4 734,256 - -0.1 734,256 - -0.5 734,256 - -2.4 734,256 - +0.1 734,342 + MPMX19_03361 0.17 +1.2 734,342 + MPMX19_03361 0.17 +0.6 734,342 + MPMX19_03361 0.17 -1.2 734,342 + MPMX19_03361 0.17 -1.1 734,342 + MPMX19_03361 0.17 -0.5 734,342 + MPMX19_03361 0.17 -0.3 734,343 - MPMX19_03361 0.17 +0.6 734,343 - MPMX19_03361 0.17 +0.4 734,343 - MPMX19_03361 0.17 +0.6 734,398 + MPMX19_03361 0.22 +0.6 734,399 - MPMX19_03361 0.22 +1.0 734,399 - MPMX19_03361 0.22 +0.0 734,406 - MPMX19_03361 0.23 -1.0 734,459 + MPMX19_03361 0.27 -0.3 734,459 + MPMX19_03361 0.27 +0.7 734,549 + MPMX19_03361 0.35 -0.1 734,549 + MPMX19_03361 0.35 -1.0 734,550 - MPMX19_03361 0.35 -0.5 734,816 + MPMX19_03361 0.58 -1.8 734,816 + MPMX19_03361 0.58 -0.2 734,816 + MPMX19_03361 0.58 +0.8 734,816 + MPMX19_03361 0.58 +0.1 734,817 - MPMX19_03361 0.58 -1.0 734,817 - MPMX19_03361 0.58 -0.1 734,817 - MPMX19_03361 0.58 -0.1 734,817 - MPMX19_03361 0.58 +0.3 734,817 - MPMX19_03361 0.58 -0.5 735,015 + MPMX19_03361 0.75 -1.1 735,015 + MPMX19_03361 0.75 +0.5 735,015 + MPMX19_03361 0.75 -1.0 735,119 + MPMX19_03361 0.85 -1.8 735,119 + MPMX19_03361 0.85 +0.0 735,120 - MPMX19_03361 0.85 +1.2 735,120 - MPMX19_03361 0.85 +0.1 735,120 - MPMX19_03361 0.85 +0.4 735,120 - MPMX19_03361 0.85 -0.8 735,120 - MPMX19_03361 0.85 -1.2 735,251 + -0.6 735,251 + +0.0 735,252 - -1.3 735,469 + -0.8 735,469 + -0.8 735,469 + +0.5 735,470 - -1.7 735,470 - +1.2 735,470 - +0.2 735,538 + MPMX19_03362 0.11 -0.2 735,539 - MPMX19_03362 0.11 -2.6 735,557 - MPMX19_03362 0.12 -0.4 735,760 + MPMX19_03362 0.24 -0.8 735,761 - MPMX19_03362 0.24 -1.3 735,761 - MPMX19_03362 0.24 -1.3 735,880 + MPMX19_03362 0.31 +0.8 736,130 - MPMX19_03362 0.46 -0.8 736,130 - MPMX19_03362 0.46 +0.9 736,130 - MPMX19_03362 0.46 +0.1 736,159 + MPMX19_03362 0.48 -0.9 736,159 + MPMX19_03362 0.48 +0.8 736,159 + MPMX19_03362 0.48 -1.2 736,159 + MPMX19_03362 0.48 +1.1 736,159 + MPMX19_03362 0.48 +0.6 736,159 + MPMX19_03362 0.48 +0.6 736,159 + MPMX19_03362 0.48 -0.1 736,159 + MPMX19_03362 0.48 +0.0 736,159 + MPMX19_03362 0.48 +0.6 736,159 + MPMX19_03362 0.48 -1.0 736,159 + MPMX19_03362 0.48 -0.0 736,159 + MPMX19_03362 0.48 -0.3 736,160 - MPMX19_03362 0.48 -1.0 736,160 - MPMX19_03362 0.48 -0.5 736,160 - MPMX19_03362 0.48 -0.2 736,160 - MPMX19_03362 0.48 -0.6 736,160 - MPMX19_03362 0.48 -2.1 736,160 - MPMX19_03362 0.48 +0.9 736,160 - MPMX19_03362 0.48 -1.4 736,160 - MPMX19_03362 0.48 -0.7 736,160 - MPMX19_03362 0.48 -1.4 736,160 - MPMX19_03362 0.48 -0.1 736,160 - MPMX19_03362 0.48 -2.1 736,160 - MPMX19_03362 0.48 +1.1 736,160 - MPMX19_03362 0.48 +0.0 736,160 - MPMX19_03362 0.48 -0.8 736,160 - MPMX19_03362 0.48 -0.1 736,160 - MPMX19_03362 0.48 -1.5 736,160 - MPMX19_03362 0.48 -0.4 736,160 - MPMX19_03362 0.48 +0.4 736,160 - MPMX19_03362 0.48 -0.7 736,160 - MPMX19_03362 0.48 -1.5 736,168 + MPMX19_03362 0.49 -2.6 736,294 + MPMX19_03362 0.56 -0.2 736,294 + MPMX19_03362 0.56 -1.7 736,297 + MPMX19_03362 0.56 -1.4 736,297 + MPMX19_03362 0.56 -0.6 736,297 + MPMX19_03362 0.56 +2.1 736,297 + MPMX19_03362 0.56 -1.8 736,297 + MPMX19_03362 0.56 -1.4
Or see this region's nucleotide sequence