Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03273

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03272 and MPMX19_03273 overlap by 4 nucleotidesMPMX19_03273 and MPMX19_03274 are separated by 193 nucleotides MPMX19_03272: MPMX19_03272 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 616,359 to 617,402 _03272 MPMX19_03273: MPMX19_03273 - Oligosaccharide 4-alpha-D-glucosyltransferase, at 617,399 to 619,753 _03273 MPMX19_03274: MPMX19_03274 - hypothetical protein, at 619,947 to 620,942 _03274 Position (kb) 617 618 619 620Strain fitness (log2 ratio) -2 -1 0 1 2at 616.608 kb on + strand, within MPMX19_03272at 616.608 kb on + strand, within MPMX19_03272at 616.608 kb on + strand, within MPMX19_03272at 616.608 kb on + strand, within MPMX19_03272at 616.609 kb on - strand, within MPMX19_03272at 616.609 kb on - strand, within MPMX19_03272at 616.617 kb on + strand, within MPMX19_03272at 616.618 kb on - strand, within MPMX19_03272at 616.734 kb on + strand, within MPMX19_03272at 616.734 kb on + strand, within MPMX19_03272at 616.734 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.923 kb on + strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 616.924 kb on - strand, within MPMX19_03272at 617.022 kb on + strand, within MPMX19_03272at 617.022 kb on + strand, within MPMX19_03272at 617.022 kb on + strand, within MPMX19_03272at 617.022 kb on + strand, within MPMX19_03272at 617.022 kb on + strand, within MPMX19_03272at 617.023 kb on - strand, within MPMX19_03272at 617.232 kb on + strand, within MPMX19_03272at 617.233 kb on - strand, within MPMX19_03272at 617.233 kb on - strand, within MPMX19_03272at 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.444 kb on + strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.445 kb on - strandat 617.537 kb on + strandat 617.537 kb on + strandat 617.538 kb on - strandat 617.538 kb on - strandat 617.538 kb on - strandat 617.588 kb on + strandat 617.589 kb on - strandat 617.589 kb on - strandat 617.589 kb on - strandat 617.589 kb on - strandat 617.589 kb on - strandat 617.589 kb on - strandat 617.589 kb on - strandat 617.777 kb on + strand, within MPMX19_03273at 617.777 kb on + strand, within MPMX19_03273at 617.777 kb on + strand, within MPMX19_03273at 617.777 kb on + strand, within MPMX19_03273at 617.778 kb on - strand, within MPMX19_03273at 617.778 kb on - strand, within MPMX19_03273at 617.778 kb on - strand, within MPMX19_03273at 617.813 kb on + strand, within MPMX19_03273at 617.813 kb on + strand, within MPMX19_03273at 617.814 kb on - strand, within MPMX19_03273at 617.814 kb on - strand, within MPMX19_03273at 617.814 kb on - strand, within MPMX19_03273at 617.814 kb on - strand, within MPMX19_03273at 617.814 kb on - strand, within MPMX19_03273at 617.814 kb on - strand, within MPMX19_03273at 617.948 kb on + strand, within MPMX19_03273at 617.948 kb on + strand, within MPMX19_03273at 617.948 kb on + strand, within MPMX19_03273at 617.948 kb on + strand, within MPMX19_03273at 617.949 kb on - strand, within MPMX19_03273at 617.949 kb on - strand, within MPMX19_03273at 617.949 kb on - strand, within MPMX19_03273at 617.949 kb on - strand, within MPMX19_03273at 617.949 kb on - strand, within MPMX19_03273at 618.002 kb on + strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.003 kb on - strand, within MPMX19_03273at 618.005 kb on + strand, within MPMX19_03273at 618.005 kb on + strand, within MPMX19_03273at 618.005 kb on + strand, within MPMX19_03273at 618.006 kb on - strand, within MPMX19_03273at 618.006 kb on - strand, within MPMX19_03273at 618.056 kb on + strand, within MPMX19_03273at 618.056 kb on + strand, within MPMX19_03273at 618.057 kb on - strand, within MPMX19_03273at 618.057 kb on - strand, within MPMX19_03273at 618.077 kb on + strand, within MPMX19_03273at 618.078 kb on - strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.107 kb on + strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.108 kb on - strand, within MPMX19_03273at 618.265 kb on - strand, within MPMX19_03273at 618.321 kb on - strand, within MPMX19_03273at 618.321 kb on - strand, within MPMX19_03273at 618.321 kb on - strand, within MPMX19_03273at 618.321 kb on - strand, within MPMX19_03273at 618.398 kb on - strand, within MPMX19_03273at 618.398 kb on - strand, within MPMX19_03273at 618.398 kb on - strand, within MPMX19_03273at 618.554 kb on + strand, within MPMX19_03273at 618.554 kb on + strand, within MPMX19_03273at 618.662 kb on + strand, within MPMX19_03273at 618.662 kb on + strand, within MPMX19_03273at 618.803 kb on + strand, within MPMX19_03273at 618.803 kb on + strand, within MPMX19_03273at 618.803 kb on + strand, within MPMX19_03273at 618.803 kb on + strand, within MPMX19_03273at 618.803 kb on + strand, within MPMX19_03273at 618.803 kb on + strand, within MPMX19_03273at 618.804 kb on - strand, within MPMX19_03273at 618.804 kb on - strand, within MPMX19_03273at 618.804 kb on - strand, within MPMX19_03273at 618.804 kb on - strand, within MPMX19_03273at 618.804 kb on - strand, within MPMX19_03273at 618.804 kb on - strand, within MPMX19_03273at 618.804 kb on - strand, within MPMX19_03273at 619.142 kb on + strand, within MPMX19_03273at 619.142 kb on + strand, within MPMX19_03273at 619.142 kb on + strand, within MPMX19_03273at 619.142 kb on + strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.143 kb on - strand, within MPMX19_03273at 619.148 kb on + strand, within MPMX19_03273at 619.149 kb on - strand, within MPMX19_03273at 619.205 kb on + strand, within MPMX19_03273at 619.343 kb on + strand, within MPMX19_03273at 619.343 kb on + strand, within MPMX19_03273at 619.344 kb on - strand, within MPMX19_03273at 619.508 kb on + strand, within MPMX19_03273at 619.508 kb on + strand, within MPMX19_03273at 619.508 kb on + strand, within MPMX19_03273at 619.508 kb on + strand, within MPMX19_03273at 619.509 kb on - strand, within MPMX19_03273at 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.541 kb on + strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.542 kb on - strandat 619.656 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.787 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.789 kb on - strandat 619.942 kb on + strandat 619.942 kb on + strandat 619.942 kb on + strandat 619.945 kb on + strandat 619.945 kb on + strandat 619.945 kb on + strandat 619.945 kb on + strandat 619.945 kb on + strandat 619.945 kb on + strandat 619.945 kb on + strandat 620.151 kb on + strand, within MPMX19_03274at 620.151 kb on + strand, within MPMX19_03274at 620.215 kb on + strand, within MPMX19_03274at 620.215 kb on + strand, within MPMX19_03274at 620.215 kb on + strand, within MPMX19_03274at 620.317 kb on + strand, within MPMX19_03274at 620.318 kb on - strand, within MPMX19_03274at 620.318 kb on - strand, within MPMX19_03274at 620.318 kb on - strand, within MPMX19_03274at 620.563 kb on + strand, within MPMX19_03274at 620.564 kb on - strand, within MPMX19_03274

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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616,608 + MPMX19_03272 0.24 +0.2
616,608 + MPMX19_03272 0.24 -2.4
616,608 + MPMX19_03272 0.24 -2.6
616,608 + MPMX19_03272 0.24 -0.7
616,609 - MPMX19_03272 0.24 +1.1
616,609 - MPMX19_03272 0.24 +0.7
616,617 + MPMX19_03272 0.25 +0.3
616,618 - MPMX19_03272 0.25 -1.1
616,734 + MPMX19_03272 0.36 -0.6
616,734 + MPMX19_03272 0.36 -0.9
616,734 + MPMX19_03272 0.36 -0.6
616,923 + MPMX19_03272 0.54 +0.1
616,923 + MPMX19_03272 0.54 +0.2
616,923 + MPMX19_03272 0.54 -0.1
616,923 + MPMX19_03272 0.54 +0.1
616,923 + MPMX19_03272 0.54 +0.3
616,923 + MPMX19_03272 0.54 -1.8
616,923 + MPMX19_03272 0.54 -0.8
616,923 + MPMX19_03272 0.54 -0.9
616,923 + MPMX19_03272 0.54 -0.9
616,923 + MPMX19_03272 0.54 -0.3
616,923 + MPMX19_03272 0.54 -0.5
616,923 + MPMX19_03272 0.54 -0.1
616,923 + MPMX19_03272 0.54 -1.8
616,923 + MPMX19_03272 0.54 +0.3
616,923 + MPMX19_03272 0.54 +0.3
616,924 - MPMX19_03272 0.54 +0.3
616,924 - MPMX19_03272 0.54 -1.0
616,924 - MPMX19_03272 0.54 +0.6
616,924 - MPMX19_03272 0.54 -0.7
616,924 - MPMX19_03272 0.54 -0.1
616,924 - MPMX19_03272 0.54 +0.8
616,924 - MPMX19_03272 0.54 -0.9
616,924 - MPMX19_03272 0.54 +0.2
616,924 - MPMX19_03272 0.54 -1.1
616,924 - MPMX19_03272 0.54 +0.6
616,924 - MPMX19_03272 0.54 -0.0
617,022 + MPMX19_03272 0.64 -0.9
617,022 + MPMX19_03272 0.64 -1.9
617,022 + MPMX19_03272 0.64 +0.1
617,022 + MPMX19_03272 0.64 -0.0
617,022 + MPMX19_03272 0.64 -0.8
617,023 - MPMX19_03272 0.64 +0.1
617,232 + MPMX19_03272 0.84 -1.3
617,233 - MPMX19_03272 0.84 -0.8
617,233 - MPMX19_03272 0.84 -1.1
617,444 + +0.1
617,444 + +0.2
617,444 + -0.2
617,444 + -0.0
617,444 + +2.0
617,444 + +0.8
617,444 + -0.0
617,444 + +0.7
617,444 + +0.1
617,444 + -0.2
617,444 + +1.4
617,444 + -1.1
617,444 + -1.2
617,444 + -0.5
617,444 + -1.1
617,445 - +0.3
617,445 - -0.5
617,445 - +0.1
617,445 - -1.3
617,445 - -1.6
617,445 - -0.3
617,445 - +0.5
617,445 - -0.6
617,445 - +0.2
617,445 - +0.1
617,445 - +0.1
617,445 - -0.7
617,445 - -0.1
617,445 - -0.3
617,445 - +0.3
617,445 - +0.7
617,445 - +0.1
617,445 - -0.6
617,445 - +0.5
617,537 + -0.3
617,537 + +1.1
617,538 - -2.1
617,538 - -2.2
617,538 - +0.4
617,588 + +0.5
617,589 - -0.0
617,589 - -0.5
617,589 - -0.1
617,589 - +0.2
617,589 - -1.5
617,589 - -0.9
617,589 - -1.2
617,777 + MPMX19_03273 0.16 -0.9
617,777 + MPMX19_03273 0.16 -0.2
617,777 + MPMX19_03273 0.16 -1.1
617,777 + MPMX19_03273 0.16 -0.6
617,778 - MPMX19_03273 0.16 -0.7
617,778 - MPMX19_03273 0.16 -1.0
617,778 - MPMX19_03273 0.16 -1.0
617,813 + MPMX19_03273 0.18 +0.1
617,813 + MPMX19_03273 0.18 +0.2
617,814 - MPMX19_03273 0.18 -2.1
617,814 - MPMX19_03273 0.18 -1.7
617,814 - MPMX19_03273 0.18 -0.3
617,814 - MPMX19_03273 0.18 -0.2
617,814 - MPMX19_03273 0.18 +0.1
617,814 - MPMX19_03273 0.18 -0.7
617,948 + MPMX19_03273 0.23 -0.1
617,948 + MPMX19_03273 0.23 +0.8
617,948 + MPMX19_03273 0.23 -0.3
617,948 + MPMX19_03273 0.23 +0.5
617,949 - MPMX19_03273 0.23 -1.0
617,949 - MPMX19_03273 0.23 +0.3
617,949 - MPMX19_03273 0.23 +0.2
617,949 - MPMX19_03273 0.23 +0.4
617,949 - MPMX19_03273 0.23 +0.2
618,002 + MPMX19_03273 0.26 -0.3
618,003 - MPMX19_03273 0.26 +0.9
618,003 - MPMX19_03273 0.26 +0.1
618,003 - MPMX19_03273 0.26 +0.5
618,003 - MPMX19_03273 0.26 +0.1
618,003 - MPMX19_03273 0.26 -1.3
618,003 - MPMX19_03273 0.26 -0.1
618,003 - MPMX19_03273 0.26 -0.5
618,003 - MPMX19_03273 0.26 +0.8
618,003 - MPMX19_03273 0.26 -0.7
618,005 + MPMX19_03273 0.26 -0.9
618,005 + MPMX19_03273 0.26 +0.1
618,005 + MPMX19_03273 0.26 -1.8
618,006 - MPMX19_03273 0.26 +0.1
618,006 - MPMX19_03273 0.26 -0.8
618,056 + MPMX19_03273 0.28 -1.7
618,056 + MPMX19_03273 0.28 +0.4
618,057 - MPMX19_03273 0.28 +0.1
618,057 - MPMX19_03273 0.28 -0.4
618,077 + MPMX19_03273 0.29 +0.1
618,078 - MPMX19_03273 0.29 -0.5
618,107 + MPMX19_03273 0.30 +0.2
618,107 + MPMX19_03273 0.30 -1.9
618,107 + MPMX19_03273 0.30 -0.8
618,107 + MPMX19_03273 0.30 +0.3
618,107 + MPMX19_03273 0.30 +0.1
618,107 + MPMX19_03273 0.30 -1.1
618,107 + MPMX19_03273 0.30 +0.5
618,107 + MPMX19_03273 0.30 -0.1
618,107 + MPMX19_03273 0.30 -0.2
618,107 + MPMX19_03273 0.30 +0.7
618,108 - MPMX19_03273 0.30 -0.6
618,108 - MPMX19_03273 0.30 +0.1
618,108 - MPMX19_03273 0.30 +1.1
618,108 - MPMX19_03273 0.30 -0.2
618,108 - MPMX19_03273 0.30 -0.7
618,108 - MPMX19_03273 0.30 -1.3
618,108 - MPMX19_03273 0.30 -2.0
618,108 - MPMX19_03273 0.30 -0.3
618,108 - MPMX19_03273 0.30 -0.3
618,108 - MPMX19_03273 0.30 -0.5
618,108 - MPMX19_03273 0.30 -2.1
618,108 - MPMX19_03273 0.30 -0.7
618,265 - MPMX19_03273 0.37 -0.1
618,321 - MPMX19_03273 0.39 -1.8
618,321 - MPMX19_03273 0.39 -0.7
618,321 - MPMX19_03273 0.39 -1.5
618,321 - MPMX19_03273 0.39 +0.1
618,398 - MPMX19_03273 0.42 -1.8
618,398 - MPMX19_03273 0.42 -1.7
618,398 - MPMX19_03273 0.42 +0.3
618,554 + MPMX19_03273 0.49 -1.1
618,554 + MPMX19_03273 0.49 -1.3
618,662 + MPMX19_03273 0.54 +0.1
618,662 + MPMX19_03273 0.54 -0.1
618,803 + MPMX19_03273 0.60 -0.7
618,803 + MPMX19_03273 0.60 -1.8
618,803 + MPMX19_03273 0.60 +0.1
618,803 + MPMX19_03273 0.60 -1.5
618,803 + MPMX19_03273 0.60 +0.7
618,803 + MPMX19_03273 0.60 -0.6
618,804 - MPMX19_03273 0.60 +0.2
618,804 - MPMX19_03273 0.60 +0.2
618,804 - MPMX19_03273 0.60 -2.5
618,804 - MPMX19_03273 0.60 -0.7
618,804 - MPMX19_03273 0.60 +0.1
618,804 - MPMX19_03273 0.60 -1.8
618,804 - MPMX19_03273 0.60 +1.1
619,142 + MPMX19_03273 0.74 -0.8
619,142 + MPMX19_03273 0.74 -0.8
619,142 + MPMX19_03273 0.74 -0.7
619,142 + MPMX19_03273 0.74 -1.2
619,143 - MPMX19_03273 0.74 -1.8
619,143 - MPMX19_03273 0.74 -0.9
619,143 - MPMX19_03273 0.74 +0.4
619,143 - MPMX19_03273 0.74 -0.9
619,143 - MPMX19_03273 0.74 -1.1
619,143 - MPMX19_03273 0.74 -1.8
619,143 - MPMX19_03273 0.74 -0.3
619,143 - MPMX19_03273 0.74 -1.0
619,148 + MPMX19_03273 0.74 +0.9
619,149 - MPMX19_03273 0.74 -0.1
619,205 + MPMX19_03273 0.77 +0.9
619,343 + MPMX19_03273 0.83 -1.1
619,343 + MPMX19_03273 0.83 -0.3
619,344 - MPMX19_03273 0.83 -0.3
619,508 + MPMX19_03273 0.90 +0.2
619,508 + MPMX19_03273 0.90 -0.9
619,508 + MPMX19_03273 0.90 -2.0
619,508 + MPMX19_03273 0.90 +0.1
619,509 - MPMX19_03273 0.90 +0.4
619,541 + -0.3
619,541 + -1.8
619,541 + +1.2
619,541 + -0.5
619,542 - -1.8
619,542 - -0.1
619,542 - -0.5
619,656 - -0.1
619,787 - -0.9
619,787 - +1.3
619,787 - -0.9
619,787 - -0.5
619,787 - +0.1
619,787 - +0.3
619,787 - +0.3
619,787 - +0.0
619,787 - -0.6
619,789 - +0.7
619,789 - +0.5
619,789 - -0.7
619,789 - -0.3
619,789 - -1.0
619,789 - -0.9
619,789 - -0.1
619,789 - -1.7
619,789 - -2.1
619,789 - +1.1
619,789 - +0.1
619,789 - +0.3
619,942 + -1.0
619,942 + -0.5
619,942 + -0.1
619,945 + -0.5
619,945 + -1.9
619,945 + +0.0
619,945 + +1.2
619,945 + -0.5
619,945 + +0.1
619,945 + -1.2
620,151 + MPMX19_03274 0.20 -1.1
620,151 + MPMX19_03274 0.20 -1.1
620,215 + MPMX19_03274 0.27 +0.2
620,215 + MPMX19_03274 0.27 +0.3
620,215 + MPMX19_03274 0.27 -0.1
620,317 + MPMX19_03274 0.37 -0.2
620,318 - MPMX19_03274 0.37 -0.7
620,318 - MPMX19_03274 0.37 -0.2
620,318 - MPMX19_03274 0.37 -0.6
620,563 + MPMX19_03274 0.62 -1.5
620,564 - MPMX19_03274 0.62 -0.8

Or see this region's nucleotide sequence