Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03204 and MPMX19_03205 are separated by 228 nucleotides MPMX19_03205 and MPMX19_03206 are separated by 272 nucleotides
MPMX19_03204: MPMX19_03204 - IS110 family transposase ISMno25, at 502,085 to 503,260
_03204
MPMX19_03205: MPMX19_03205 - IS5 family transposase ISAzs10, at 503,489 to 504,565
_03205
MPMX19_03206: MPMX19_03206 - HTH-type transcriptional activator RhaS, at 504,838 to 505,716
_03206
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.601 kb on - strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.745 kb on + strand, within MPMX19_03204 at 502.894 kb on + strand, within MPMX19_03204 at 502.940 kb on + strand, within MPMX19_03204 at 502.940 kb on + strand, within MPMX19_03204 at 502.941 kb on - strand, within MPMX19_03204 at 503.025 kb on + strand, within MPMX19_03204 at 503.025 kb on + strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.368 kb on - strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.407 kb on - strand at 503.407 kb on - strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.470 kb on + strand at 503.470 kb on + strand at 503.470 kb on + strand at 503.471 kb on - strand at 503.471 kb on - strand at 503.471 kb on - strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.529 kb on - strand at 503.529 kb on - strand at 503.529 kb on - strand at 503.803 kb on + strand, within MPMX19_03205 at 504.087 kb on - strand, within MPMX19_03205 at 504.525 kb on - strand at 504.525 kb on - strand at 504.525 kb on - strand at 504.525 kb on - strand at 504.525 kb on - strand at 504.563 kb on + strand at 504.563 kb on + strand at 504.563 kb on + strand at 504.564 kb on - strand at 504.564 kb on - strand at 504.564 kb on - strand at 504.564 kb on - strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.691 kb on + strand at 504.742 kb on + strand at 504.743 kb on - strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.912 kb on + strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 504.913 kb on - strand at 505.075 kb on + strand, within MPMX19_03206 at 505.075 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.130 kb on + strand, within MPMX19_03206 at 505.131 kb on - strand, within MPMX19_03206 at 505.131 kb on - strand, within MPMX19_03206 at 505.131 kb on - strand, within MPMX19_03206 at 505.239 kb on - strand, within MPMX19_03206 at 505.247 kb on + strand, within MPMX19_03206 at 505.247 kb on + strand, within MPMX19_03206 at 505.248 kb on - strand, within MPMX19_03206 at 505.248 kb on - strand, within MPMX19_03206 at 505.406 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.469 kb on + strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.470 kb on - strand, within MPMX19_03206 at 505.527 kb on + strand, within MPMX19_03206 at 505.528 kb on - strand, within MPMX19_03206
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 502,498 + MPMX19_03204 0.35 -1.0 502,498 + MPMX19_03204 0.35 -2.2 502,498 + MPMX19_03204 0.35 -1.8 502,498 + MPMX19_03204 0.35 +0.9 502,498 + MPMX19_03204 0.35 -0.1 502,498 + MPMX19_03204 0.35 -0.7 502,498 + MPMX19_03204 0.35 -0.3 502,498 + MPMX19_03204 0.35 +0.8 502,499 - MPMX19_03204 0.35 -0.3 502,499 - MPMX19_03204 0.35 -0.4 502,499 - MPMX19_03204 0.35 -0.6 502,499 - MPMX19_03204 0.35 +0.1 502,499 - MPMX19_03204 0.35 -0.3 502,499 - MPMX19_03204 0.35 -1.3 502,546 + MPMX19_03204 0.39 +0.4 502,546 + MPMX19_03204 0.39 -0.8 502,546 + MPMX19_03204 0.39 -0.3 502,547 - MPMX19_03204 0.39 -1.3 502,547 - MPMX19_03204 0.39 -0.7 502,598 + MPMX19_03204 0.44 -0.9 502,598 + MPMX19_03204 0.44 -0.4 502,598 + MPMX19_03204 0.44 +0.9 502,598 + MPMX19_03204 0.44 +0.1 502,598 + MPMX19_03204 0.44 -0.9 502,598 + MPMX19_03204 0.44 -0.3 502,599 - MPMX19_03204 0.44 +0.1 502,599 - MPMX19_03204 0.44 -0.1 502,599 - MPMX19_03204 0.44 -0.6 502,599 - MPMX19_03204 0.44 -0.1 502,600 + MPMX19_03204 0.44 -1.0 502,600 + MPMX19_03204 0.44 -1.3 502,601 - MPMX19_03204 0.44 -2.0 502,658 + MPMX19_03204 0.49 -1.8 502,658 + MPMX19_03204 0.49 -1.7 502,658 + MPMX19_03204 0.49 -0.3 502,658 + MPMX19_03204 0.49 +0.4 502,658 + MPMX19_03204 0.49 +0.3 502,658 + MPMX19_03204 0.49 -0.8 502,658 + MPMX19_03204 0.49 +0.2 502,659 - MPMX19_03204 0.49 -1.4 502,659 - MPMX19_03204 0.49 +0.8 502,659 - MPMX19_03204 0.49 -0.7 502,659 - MPMX19_03204 0.49 -0.5 502,745 + MPMX19_03204 0.56 -0.6 502,894 + MPMX19_03204 0.69 +1.7 502,940 + MPMX19_03204 0.73 -0.6 502,940 + MPMX19_03204 0.73 +1.3 502,941 - MPMX19_03204 0.73 -0.4 503,025 + MPMX19_03204 0.80 -0.9 503,025 + MPMX19_03204 0.80 -0.7 503,026 - MPMX19_03204 0.80 -0.8 503,026 - MPMX19_03204 0.80 -0.1 503,026 - MPMX19_03204 0.80 -1.5 503,026 - MPMX19_03204 0.80 -0.6 503,154 - -1.2 503,154 - -1.1 503,154 - -0.0 503,154 - -0.8 503,154 - +0.7 503,318 + -1.6 503,318 + +1.3 503,318 + +0.0 503,318 + -0.9 503,318 + -0.4 503,319 - -1.8 503,319 - -0.8 503,319 - -0.3 503,368 - +0.4 503,406 + -0.3 503,406 + -1.7 503,406 + +0.3 503,406 + -0.3 503,407 - +0.1 503,407 - +0.3 503,427 + -0.3 503,427 + -0.9 503,427 + -1.7 503,427 + +1.0 503,428 - +0.7 503,428 - -0.1 503,428 - -0.3 503,428 - -0.5 503,428 - -1.1 503,428 - -1.6 503,470 + -0.3 503,470 + -1.0 503,470 + -1.3 503,471 - -0.9 503,471 - -0.2 503,471 - -0.7 503,528 + +0.4 503,528 + -1.0 503,528 + -3.3 503,528 + -0.9 503,529 - -0.7 503,529 - -0.7 503,529 - +0.5 503,803 + MPMX19_03205 0.29 +0.2 504,087 - MPMX19_03205 0.56 -0.6 504,525 - -0.1 504,525 - -0.8 504,525 - +0.6 504,525 - -1.7 504,525 - -0.5 504,563 + -0.3 504,563 + -1.5 504,563 + -0.9 504,564 - +0.8 504,564 - -1.2 504,564 - -0.7 504,564 - -2.1 504,691 + -1.6 504,691 + -0.8 504,691 + -0.4 504,691 + +0.3 504,691 + -0.7 504,742 + -0.7 504,743 - -1.1 504,912 + -0.2 504,912 + +0.7 504,912 + +1.7 504,912 + +0.1 504,912 + -0.7 504,912 + +1.4 504,912 + -0.7 504,912 + -0.0 504,912 + -1.3 504,912 + +0.3 504,912 + -0.5 504,912 + +0.0 504,913 - -1.1 504,913 - -1.1 504,913 - -0.0 504,913 - -0.7 504,913 - +0.1 504,913 - -1.0 504,913 - -0.3 504,913 - +0.3 504,913 - -0.7 504,913 - +0.1 504,913 - -2.0 504,913 - -1.8 505,075 + MPMX19_03206 0.27 -0.4 505,075 + MPMX19_03206 0.27 -0.7 505,130 + MPMX19_03206 0.33 +0.1 505,130 + MPMX19_03206 0.33 +0.4 505,130 + MPMX19_03206 0.33 -1.3 505,130 + MPMX19_03206 0.33 +1.7 505,130 + MPMX19_03206 0.33 +0.2 505,131 - MPMX19_03206 0.33 -1.7 505,131 - MPMX19_03206 0.33 -1.0 505,131 - MPMX19_03206 0.33 -0.7 505,239 - MPMX19_03206 0.46 -0.7 505,247 + MPMX19_03206 0.47 -0.9 505,247 + MPMX19_03206 0.47 -1.3 505,248 - MPMX19_03206 0.47 +1.0 505,248 - MPMX19_03206 0.47 +0.0 505,406 + MPMX19_03206 0.65 -0.5 505,469 + MPMX19_03206 0.72 -0.1 505,469 + MPMX19_03206 0.72 -1.1 505,469 + MPMX19_03206 0.72 -0.8 505,469 + MPMX19_03206 0.72 +0.3 505,469 + MPMX19_03206 0.72 -1.9 505,469 + MPMX19_03206 0.72 -0.6 505,469 + MPMX19_03206 0.72 +0.3 505,469 + MPMX19_03206 0.72 -0.3 505,469 + MPMX19_03206 0.72 -0.0 505,470 - MPMX19_03206 0.72 +0.7 505,470 - MPMX19_03206 0.72 +0.7 505,470 - MPMX19_03206 0.72 -1.1 505,470 - MPMX19_03206 0.72 +1.9 505,470 - MPMX19_03206 0.72 +1.9 505,470 - MPMX19_03206 0.72 +2.1 505,470 - MPMX19_03206 0.72 +1.0 505,470 - MPMX19_03206 0.72 -0.8 505,470 - MPMX19_03206 0.72 -1.3 505,470 - MPMX19_03206 0.72 -0.1 505,470 - MPMX19_03206 0.72 -2.1 505,470 - MPMX19_03206 0.72 +0.5 505,470 - MPMX19_03206 0.72 +0.7 505,470 - MPMX19_03206 0.72 -0.7 505,470 - MPMX19_03206 0.72 -0.1 505,527 + MPMX19_03206 0.78 -1.9 505,528 - MPMX19_03206 0.78 -0.7
Or see this region's nucleotide sequence