Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03158 and MPMX19_03159 overlap by 4 nucleotides MPMX19_03159 and MPMX19_03160 are separated by 6 nucleotides MPMX19_03160 and MPMX19_03161 are separated by 114 nucleotides
MPMX19_03158: MPMX19_03158 - putative protein YcjX, at 450,397 to 451,791
_03158
MPMX19_03159: MPMX19_03159 - hypothetical protein, at 451,788 to 452,810
_03159
MPMX19_03160: MPMX19_03160 - Arsenate reductase, at 452,817 to 453,347
_03160
MPMX19_03161: MPMX19_03161 - Quercetin 2,3-dioxygenase, at 453,462 to 454,160
_03161
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 450.793 kb on + strand, within MPMX19_03158 at 450.793 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.982 kb on + strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.983 kb on - strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.991 kb on + strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 450.992 kb on - strand, within MPMX19_03158 at 451.166 kb on - strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.174 kb on + strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158 at 451.175 kb on - strand, within MPMX19_03158 at 451.678 kb on + strand at 451.678 kb on + strand at 451.678 kb on + strand at 451.678 kb on + strand at 451.678 kb on + strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.679 kb on - strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on + strand at 451.680 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.681 kb on - strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.780 kb on + strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 451.781 kb on - strand at 452.256 kb on + strand, within MPMX19_03159 at 452.256 kb on + strand, within MPMX19_03159 at 452.256 kb on + strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.257 kb on - strand, within MPMX19_03159 at 452.386 kb on - strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.511 kb on + strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.512 kb on - strand, within MPMX19_03159 at 452.529 kb on + strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.530 kb on - strand, within MPMX19_03159 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.953 kb on + strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 452.954 kb on - strand, within MPMX19_03160 at 453.328 kb on + strand at 453.328 kb on + strand at 453.328 kb on + strand at 453.329 kb on - strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.444 kb on + strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.445 kb on - strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.463 kb on + strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.464 kb on - strand at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.664 kb on + strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.665 kb on - strand, within MPMX19_03161 at 453.772 kb on + strand, within MPMX19_03161
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 450,793 + MPMX19_03158 0.28 -2.3 450,793 + MPMX19_03158 0.28 -0.9 450,982 + MPMX19_03158 0.42 +0.7 450,982 + MPMX19_03158 0.42 +0.3 450,983 - MPMX19_03158 0.42 -0.5 450,983 - MPMX19_03158 0.42 -0.6 450,983 - MPMX19_03158 0.42 +0.3 450,983 - MPMX19_03158 0.42 -1.7 450,983 - MPMX19_03158 0.42 +0.4 450,983 - MPMX19_03158 0.42 +0.3 450,991 + MPMX19_03158 0.43 -0.0 450,991 + MPMX19_03158 0.43 -1.1 450,991 + MPMX19_03158 0.43 -0.3 450,991 + MPMX19_03158 0.43 +0.2 450,991 + MPMX19_03158 0.43 +0.1 450,991 + MPMX19_03158 0.43 +0.7 450,992 - MPMX19_03158 0.43 +0.5 450,992 - MPMX19_03158 0.43 +0.8 450,992 - MPMX19_03158 0.43 -1.0 450,992 - MPMX19_03158 0.43 -0.7 450,992 - MPMX19_03158 0.43 -0.2 450,992 - MPMX19_03158 0.43 +0.0 450,992 - MPMX19_03158 0.43 +0.2 450,992 - MPMX19_03158 0.43 +0.7 451,166 - MPMX19_03158 0.55 -1.0 451,174 + MPMX19_03158 0.56 +0.9 451,174 + MPMX19_03158 0.56 +0.3 451,174 + MPMX19_03158 0.56 -0.3 451,174 + MPMX19_03158 0.56 -1.3 451,175 - MPMX19_03158 0.56 +1.9 451,175 - MPMX19_03158 0.56 -0.9 451,678 + -0.8 451,678 + -0.3 451,678 + -1.0 451,678 + +0.5 451,678 + +0.4 451,679 - -1.3 451,679 - -1.5 451,679 - +0.3 451,679 - -1.4 451,679 - -0.1 451,679 - -0.3 451,679 - -0.3 451,679 - -1.3 451,679 - -0.0 451,679 - -0.2 451,679 - -0.1 451,679 - -0.1 451,679 - +0.3 451,679 - -1.1 451,679 - -0.1 451,679 - -0.4 451,679 - -0.8 451,679 - +0.2 451,679 - -0.3 451,680 + -0.4 451,680 + -0.8 451,680 + +0.2 451,680 + +0.5 451,680 + +1.2 451,680 - -0.1 451,681 - -0.1 451,681 - +1.1 451,681 - -0.2 451,681 - +0.3 451,681 - -1.3 451,681 - -0.9 451,681 - -1.1 451,681 - -2.1 451,780 + -0.9 451,780 + -2.9 451,780 + +0.7 451,780 + +0.3 451,780 + -0.8 451,780 + -1.6 451,780 + -0.8 451,780 + -1.1 451,781 - -1.9 451,781 - -2.0 451,781 - -0.1 451,781 - -0.9 451,781 - -0.7 451,781 - -1.5 451,781 - -0.6 451,781 - +1.2 451,781 - +0.4 452,256 + MPMX19_03159 0.46 +0.4 452,256 + MPMX19_03159 0.46 -0.9 452,256 + MPMX19_03159 0.46 -0.8 452,257 - MPMX19_03159 0.46 -0.9 452,257 - MPMX19_03159 0.46 -0.3 452,257 - MPMX19_03159 0.46 -1.5 452,257 - MPMX19_03159 0.46 -1.8 452,257 - MPMX19_03159 0.46 +0.3 452,257 - MPMX19_03159 0.46 +0.0 452,257 - MPMX19_03159 0.46 +0.2 452,386 - MPMX19_03159 0.58 -0.0 452,511 + MPMX19_03159 0.71 -0.6 452,511 + MPMX19_03159 0.71 +0.9 452,511 + MPMX19_03159 0.71 +1.3 452,511 + MPMX19_03159 0.71 -0.5 452,511 + MPMX19_03159 0.71 -1.2 452,511 + MPMX19_03159 0.71 -1.7 452,512 - MPMX19_03159 0.71 +0.3 452,512 - MPMX19_03159 0.71 -0.9 452,512 - MPMX19_03159 0.71 -2.3 452,512 - MPMX19_03159 0.71 -1.5 452,512 - MPMX19_03159 0.71 -0.5 452,512 - MPMX19_03159 0.71 +0.1 452,529 + MPMX19_03159 0.72 -3.2 452,530 - MPMX19_03159 0.73 +0.6 452,530 - MPMX19_03159 0.73 -2.2 452,530 - MPMX19_03159 0.73 +0.1 452,530 - MPMX19_03159 0.73 -1.1 452,530 - MPMX19_03159 0.73 +0.2 452,530 - MPMX19_03159 0.73 -1.7 452,953 + MPMX19_03160 0.26 -0.8 452,953 + MPMX19_03160 0.26 -2.9 452,953 + MPMX19_03160 0.26 -0.5 452,953 + MPMX19_03160 0.26 -0.2 452,953 + MPMX19_03160 0.26 +0.3 452,953 + MPMX19_03160 0.26 -0.3 452,953 + MPMX19_03160 0.26 +0.4 452,953 + MPMX19_03160 0.26 +0.1 452,953 + MPMX19_03160 0.26 +0.1 452,953 + MPMX19_03160 0.26 -0.7 452,953 + MPMX19_03160 0.26 -0.8 452,953 + MPMX19_03160 0.26 -0.3 452,953 + MPMX19_03160 0.26 -0.6 452,953 + MPMX19_03160 0.26 -2.0 452,953 + MPMX19_03160 0.26 -0.7 452,953 + MPMX19_03160 0.26 -2.1 452,953 + MPMX19_03160 0.26 -0.9 452,953 + MPMX19_03160 0.26 -0.1 452,953 + MPMX19_03160 0.26 +0.1 452,953 + MPMX19_03160 0.26 -0.7 452,953 + MPMX19_03160 0.26 -1.8 452,953 + MPMX19_03160 0.26 -1.7 452,953 + MPMX19_03160 0.26 +0.4 452,953 + MPMX19_03160 0.26 -0.8 452,953 + MPMX19_03160 0.26 -0.7 452,953 + MPMX19_03160 0.26 -0.8 452,953 + MPMX19_03160 0.26 -1.5 452,954 - MPMX19_03160 0.26 -0.4 452,954 - MPMX19_03160 0.26 -0.1 452,954 - MPMX19_03160 0.26 +1.3 452,954 - MPMX19_03160 0.26 -2.9 452,954 - MPMX19_03160 0.26 +0.8 452,954 - MPMX19_03160 0.26 -0.7 452,954 - MPMX19_03160 0.26 -0.7 452,954 - MPMX19_03160 0.26 +0.7 452,954 - MPMX19_03160 0.26 -0.0 452,954 - MPMX19_03160 0.26 +0.5 452,954 - MPMX19_03160 0.26 +0.1 452,954 - MPMX19_03160 0.26 -0.9 452,954 - MPMX19_03160 0.26 -1.3 452,954 - MPMX19_03160 0.26 -0.7 452,954 - MPMX19_03160 0.26 -1.0 452,954 - MPMX19_03160 0.26 -1.1 452,954 - MPMX19_03160 0.26 +1.4 452,954 - MPMX19_03160 0.26 -0.1 452,954 - MPMX19_03160 0.26 +1.3 452,954 - MPMX19_03160 0.26 +0.7 452,954 - MPMX19_03160 0.26 -1.1 452,954 - MPMX19_03160 0.26 -1.6 452,954 - MPMX19_03160 0.26 -1.4 452,954 - MPMX19_03160 0.26 -0.2 452,954 - MPMX19_03160 0.26 +0.9 452,954 - MPMX19_03160 0.26 -1.3 452,954 - MPMX19_03160 0.26 +0.2 452,954 - MPMX19_03160 0.26 -0.5 452,954 - MPMX19_03160 0.26 -0.9 453,328 + +0.8 453,328 + -0.9 453,328 + -0.0 453,329 - -1.1 453,444 + -0.2 453,444 + -2.1 453,444 + -0.7 453,444 + +0.4 453,445 - +0.7 453,445 - -0.1 453,445 - -0.2 453,445 - -1.1 453,445 - -0.2 453,445 - +0.4 453,445 - -0.0 453,463 + -1.3 453,463 + +0.2 453,463 + -0.1 453,463 + -0.9 453,463 + -0.3 453,463 + -1.2 453,464 - +0.7 453,464 - -0.4 453,464 - -0.3 453,464 - -1.9 453,464 - -0.3 453,464 - +1.1 453,464 - -0.4 453,664 + MPMX19_03161 0.29 -0.2 453,664 + MPMX19_03161 0.29 +2.0 453,664 + MPMX19_03161 0.29 -1.3 453,665 - MPMX19_03161 0.29 -0.2 453,665 - MPMX19_03161 0.29 -0.4 453,665 - MPMX19_03161 0.29 +1.9 453,665 - MPMX19_03161 0.29 -0.7 453,772 + MPMX19_03161 0.44 +0.1
Or see this region's nucleotide sequence