Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03086 and MPMX19_03087 are separated by 112 nucleotides MPMX19_03087 and MPMX19_03088 overlap by 4 nucleotides MPMX19_03088 and MPMX19_03089 are separated by 284 nucleotides
MPMX19_03086: MPMX19_03086 - Ferric-pseudobactin BN7/BN8 receptor, at 355,660 to 358,197
_03086
MPMX19_03087: MPMX19_03087 - Protein FecR, at 358,310 to 359,257
_03087
MPMX19_03088: MPMX19_03088 - putative RNA polymerase sigma factor FecI, at 359,254 to 359,760
_03088
MPMX19_03089: MPMX19_03089 - Macrolide export protein MacA, at 360,045 to 361,253
_03089
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1 at 357.407 kb on + strand, within MPMX19_03086 at 357.407 kb on + strand, within MPMX19_03086 at 357.407 kb on + strand, within MPMX19_03086 at 357.407 kb on + strand, within MPMX19_03086 at 357.407 kb on + strand, within MPMX19_03086 at 357.407 kb on + strand, within MPMX19_03086 at 357.407 kb on + strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.408 kb on - strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.440 kb on + strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.441 kb on - strand, within MPMX19_03086 at 357.467 kb on + strand, within MPMX19_03086 at 357.468 kb on - strand, within MPMX19_03086 at 357.468 kb on - strand, within MPMX19_03086 at 357.662 kb on + strand, within MPMX19_03086 at 357.663 kb on - strand, within MPMX19_03086 at 357.663 kb on - strand, within MPMX19_03086 at 357.724 kb on - strand, within MPMX19_03086 at 357.929 kb on + strand, within MPMX19_03086 at 357.929 kb on + strand, within MPMX19_03086 at 357.930 kb on - strand, within MPMX19_03086 at 358.202 kb on - strand at 358.311 kb on + strand at 358.312 kb on - strand at 358.598 kb on + strand, within MPMX19_03087 at 358.599 kb on + strand, within MPMX19_03087 at 358.599 kb on + strand, within MPMX19_03087 at 358.599 kb on + strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 358.600 kb on - strand, within MPMX19_03087 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.582 kb on + strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.583 kb on - strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.636 kb on + strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.637 kb on - strand, within MPMX19_03088 at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.711 kb on + strand at 359.712 kb on - strand at 359.806 kb on + strand at 359.807 kb on - strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.905 kb on + strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.906 kb on - strand at 359.976 kb on + strand at 359.985 kb on - strand at 360.078 kb on + strand at 360.078 kb on + strand at 360.079 kb on - strand at 360.188 kb on + strand, within MPMX19_03089 at 360.188 kb on + strand, within MPMX19_03089 at 360.188 kb on + strand, within MPMX19_03089 at 360.237 kb on + strand, within MPMX19_03089 at 360.237 kb on + strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089 at 360.238 kb on - strand, within MPMX19_03089
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 357,407 + MPMX19_03086 0.69 -0.6 357,407 + MPMX19_03086 0.69 +1.1 357,407 + MPMX19_03086 0.69 -1.8 357,407 + MPMX19_03086 0.69 +0.9 357,407 + MPMX19_03086 0.69 +0.4 357,407 + MPMX19_03086 0.69 -1.1 357,407 + MPMX19_03086 0.69 -0.7 357,408 - MPMX19_03086 0.69 -1.5 357,408 - MPMX19_03086 0.69 -1.4 357,408 - MPMX19_03086 0.69 -0.4 357,408 - MPMX19_03086 0.69 -0.5 357,408 - MPMX19_03086 0.69 -1.1 357,408 - MPMX19_03086 0.69 +0.1 357,408 - MPMX19_03086 0.69 +0.4 357,408 - MPMX19_03086 0.69 -1.5 357,440 + MPMX19_03086 0.70 +0.1 357,440 + MPMX19_03086 0.70 -1.1 357,440 + MPMX19_03086 0.70 -1.5 357,440 + MPMX19_03086 0.70 -0.3 357,440 + MPMX19_03086 0.70 -1.9 357,440 + MPMX19_03086 0.70 -0.7 357,440 + MPMX19_03086 0.70 -0.5 357,440 + MPMX19_03086 0.70 -0.9 357,441 - MPMX19_03086 0.70 -1.3 357,441 - MPMX19_03086 0.70 +0.3 357,441 - MPMX19_03086 0.70 -0.2 357,441 - MPMX19_03086 0.70 -0.8 357,441 - MPMX19_03086 0.70 +1.0 357,441 - MPMX19_03086 0.70 -1.2 357,441 - MPMX19_03086 0.70 +0.7 357,441 - MPMX19_03086 0.70 -2.6 357,441 - MPMX19_03086 0.70 -0.9 357,467 + MPMX19_03086 0.71 -0.7 357,468 - MPMX19_03086 0.71 -1.8 357,468 - MPMX19_03086 0.71 -2.2 357,662 + MPMX19_03086 0.79 -0.0 357,663 - MPMX19_03086 0.79 -0.4 357,663 - MPMX19_03086 0.79 +0.4 357,724 - MPMX19_03086 0.81 +0.3 357,929 + MPMX19_03086 0.89 -0.5 357,929 + MPMX19_03086 0.89 -0.6 357,930 - MPMX19_03086 0.89 -0.6 358,202 - -0.3 358,311 + +1.1 358,312 - +0.1 358,598 + MPMX19_03087 0.30 -0.9 358,599 + MPMX19_03087 0.30 -0.5 358,599 + MPMX19_03087 0.30 -1.2 358,599 + MPMX19_03087 0.30 -0.7 358,600 - MPMX19_03087 0.31 -2.3 358,600 - MPMX19_03087 0.31 +0.5 358,600 - MPMX19_03087 0.31 +0.4 358,600 - MPMX19_03087 0.31 -1.8 358,600 - MPMX19_03087 0.31 +0.2 358,600 - MPMX19_03087 0.31 -2.5 358,600 - MPMX19_03087 0.31 -0.6 358,600 - MPMX19_03087 0.31 -0.2 358,600 - MPMX19_03087 0.31 -1.5 359,582 + MPMX19_03088 0.65 -1.1 359,582 + MPMX19_03088 0.65 +0.4 359,582 + MPMX19_03088 0.65 -1.0 359,582 + MPMX19_03088 0.65 -0.1 359,582 + MPMX19_03088 0.65 -0.2 359,583 - MPMX19_03088 0.65 -0.0 359,583 - MPMX19_03088 0.65 +1.5 359,583 - MPMX19_03088 0.65 -0.1 359,583 - MPMX19_03088 0.65 +0.1 359,636 + MPMX19_03088 0.75 -0.3 359,636 + MPMX19_03088 0.75 -0.3 359,636 + MPMX19_03088 0.75 +0.0 359,636 + MPMX19_03088 0.75 +0.2 359,636 + MPMX19_03088 0.75 +0.1 359,636 + MPMX19_03088 0.75 -0.1 359,636 + MPMX19_03088 0.75 +0.1 359,636 + MPMX19_03088 0.75 +0.4 359,636 + MPMX19_03088 0.75 +0.3 359,637 - MPMX19_03088 0.76 +0.6 359,637 - MPMX19_03088 0.76 +0.1 359,637 - MPMX19_03088 0.76 +1.1 359,637 - MPMX19_03088 0.76 -1.9 359,637 - MPMX19_03088 0.76 -0.8 359,637 - MPMX19_03088 0.76 +1.5 359,637 - MPMX19_03088 0.76 -0.6 359,637 - MPMX19_03088 0.76 -0.8 359,637 - MPMX19_03088 0.76 -1.2 359,637 - MPMX19_03088 0.76 +0.5 359,711 + +1.0 359,711 + +0.7 359,711 + -1.6 359,711 + -0.2 359,711 + +0.2 359,711 + -1.0 359,712 - +0.1 359,806 + +0.1 359,807 - -0.3 359,905 + -1.3 359,905 + -1.8 359,905 + +1.0 359,905 + -0.3 359,905 + +0.1 359,905 + +0.8 359,905 + -0.3 359,905 + -0.1 359,905 + +0.4 359,906 - -0.4 359,906 - +0.4 359,906 - -1.1 359,906 - +0.3 359,906 - -0.3 359,906 - +0.1 359,906 - +0.2 359,976 + -0.4 359,985 - +1.4 360,078 + +0.4 360,078 + -0.6 360,079 - -1.8 360,188 + MPMX19_03089 0.12 -0.3 360,188 + MPMX19_03089 0.12 +0.4 360,188 + MPMX19_03089 0.12 -0.9 360,237 + MPMX19_03089 0.16 -0.6 360,237 + MPMX19_03089 0.16 -0.3 360,238 - MPMX19_03089 0.16 +1.5 360,238 - MPMX19_03089 0.16 -1.4 360,238 - MPMX19_03089 0.16 +0.4 360,238 - MPMX19_03089 0.16 +0.4 360,238 - MPMX19_03089 0.16 +0.1
Or see this region's nucleotide sequence