Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02911

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02909 and MPMX19_02910 overlap by 4 nucleotidesMPMX19_02910 and MPMX19_02911 are separated by 44 nucleotidesMPMX19_02911 and MPMX19_02912 are separated by 196 nucleotidesMPMX19_02912 and MPMX19_02913 are separated by 155 nucleotidesMPMX19_02913 and MPMX19_02914 are separated by 7 nucleotides MPMX19_02909: MPMX19_02909 - Cytochrome c oxidase subunit 3, at 165,859 to 166,527 _02909 MPMX19_02910: MPMX19_02910 - hypothetical protein, at 166,524 to 166,868 _02910 MPMX19_02911: MPMX19_02911 - hypothetical protein, at 166,913 to 167,386 _02911 MPMX19_02912: MPMX19_02912 - hypothetical protein, at 167,583 to 167,777 _02912 MPMX19_02913: MPMX19_02913 - hypothetical protein, at 167,933 to 168,277 _02913 MPMX19_02914: MPMX19_02914 - hypothetical protein, at 168,285 to 169,109 _02914 Position (kb) 166 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.006 kb on + strand, within MPMX19_02909at 166.006 kb on + strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.059 kb on + strand, within MPMX19_02909at 166.222 kb on + strand, within MPMX19_02909at 166.223 kb on - strand, within MPMX19_02909at 166.223 kb on - strand, within MPMX19_02909at 166.228 kb on + strand, within MPMX19_02909at 166.229 kb on - strand, within MPMX19_02909at 166.312 kb on + strand, within MPMX19_02909at 166.312 kb on + strand, within MPMX19_02909at 166.313 kb on - strand, within MPMX19_02909at 166.313 kb on - strand, within MPMX19_02909at 166.313 kb on - strand, within MPMX19_02909at 166.321 kb on + strand, within MPMX19_02909at 166.322 kb on - strand, within MPMX19_02909at 166.322 kb on - strand, within MPMX19_02909at 166.427 kb on - strand, within MPMX19_02909at 166.427 kb on - strand, within MPMX19_02909at 166.427 kb on - strand, within MPMX19_02909at 166.454 kb on - strand, within MPMX19_02909at 166.454 kb on - strand, within MPMX19_02909at 166.501 kb on + strandat 166.502 kb on - strandat 166.502 kb on - strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.603 kb on + strand, within MPMX19_02910at 166.603 kb on + strand, within MPMX19_02910at 166.604 kb on - strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.791 kb on + strand, within MPMX19_02910at 166.792 kb on - strand, within MPMX19_02910at 166.792 kb on - strand, within MPMX19_02910at 166.848 kb on + strandat 166.848 kb on + strandat 167.151 kb on + strand, within MPMX19_02911at 167.151 kb on + strand, within MPMX19_02911at 167.152 kb on - strand, within MPMX19_02911at 167.152 kb on - strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.428 kb on - strandat 167.428 kb on - strandat 167.428 kb on - strandat 167.448 kb on + strandat 167.448 kb on + strandat 167.494 kb on - strandat 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.737 kb on - strand, within MPMX19_02912at 167.737 kb on - strand, within MPMX19_02912at 167.737 kb on - strand, within MPMX19_02912at 167.869 kb on - strandat 168.012 kb on - strand, within MPMX19_02913at 168.035 kb on + strand, within MPMX19_02913at 168.035 kb on + strand, within MPMX19_02913at 168.036 kb on - strand, within MPMX19_02913at 168.036 kb on - strand, within MPMX19_02913at 168.036 kb on - strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.286 kb on + strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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166,006 + MPMX19_02909 0.22 -0.9
166,006 + MPMX19_02909 0.22 +0.4
166,007 - MPMX19_02909 0.22 -0.9
166,007 - MPMX19_02909 0.22 -1.2
166,007 - MPMX19_02909 0.22 +0.4
166,007 - MPMX19_02909 0.22 +1.5
166,059 + MPMX19_02909 0.30 -0.7
166,222 + MPMX19_02909 0.54 -0.1
166,223 - MPMX19_02909 0.54 -1.5
166,223 - MPMX19_02909 0.54 -0.5
166,228 + MPMX19_02909 0.55 +1.0
166,229 - MPMX19_02909 0.55 +0.7
166,312 + MPMX19_02909 0.68 -0.6
166,312 + MPMX19_02909 0.68 +1.0
166,313 - MPMX19_02909 0.68 -0.1
166,313 - MPMX19_02909 0.68 +1.1
166,313 - MPMX19_02909 0.68 -2.4
166,321 + MPMX19_02909 0.69 -0.5
166,322 - MPMX19_02909 0.69 -0.5
166,322 - MPMX19_02909 0.69 +1.3
166,427 - MPMX19_02909 0.85 -0.5
166,427 - MPMX19_02909 0.85 +0.4
166,427 - MPMX19_02909 0.85 +1.1
166,454 - MPMX19_02909 0.89 -0.3
166,454 - MPMX19_02909 0.89 +0.6
166,501 + +0.0
166,502 - -1.4
166,502 - -0.3
166,557 + +0.1
166,557 + -0.2
166,557 + -0.4
166,557 + -1.5
166,557 + +0.6
166,557 + +2.4
166,557 + -0.8
166,557 + -0.1
166,558 - +0.0
166,558 - -0.9
166,558 - -1.3
166,558 - -0.7
166,558 - +0.5
166,558 - -2.2
166,558 - +0.3
166,603 + MPMX19_02910 0.23 +1.1
166,603 + MPMX19_02910 0.23 +0.3
166,604 - MPMX19_02910 0.23 -0.4
166,614 + MPMX19_02910 0.26 -1.0
166,614 + MPMX19_02910 0.26 -2.1
166,614 + MPMX19_02910 0.26 -0.3
166,614 + MPMX19_02910 0.26 -2.4
166,614 + MPMX19_02910 0.26 -0.1
166,614 + MPMX19_02910 0.26 -0.1
166,614 + MPMX19_02910 0.26 -1.5
166,614 + MPMX19_02910 0.26 +0.2
166,614 + MPMX19_02910 0.26 -0.3
166,614 + MPMX19_02910 0.26 +0.1
166,614 + MPMX19_02910 0.26 +0.2
166,615 - MPMX19_02910 0.26 -0.7
166,615 - MPMX19_02910 0.26 -0.8
166,615 - MPMX19_02910 0.26 -1.6
166,615 - MPMX19_02910 0.26 -1.9
166,615 - MPMX19_02910 0.26 -0.3
166,615 - MPMX19_02910 0.26 -1.1
166,615 - MPMX19_02910 0.26 -2.5
166,615 - MPMX19_02910 0.26 +0.4
166,791 + MPMX19_02910 0.77 +0.5
166,792 - MPMX19_02910 0.78 -0.0
166,792 - MPMX19_02910 0.78 -0.8
166,848 + +0.9
166,848 + +0.6
167,151 + MPMX19_02911 0.50 -0.2
167,151 + MPMX19_02911 0.50 +1.1
167,152 - MPMX19_02911 0.50 -0.0
167,152 - MPMX19_02911 0.50 -0.3
167,222 + MPMX19_02911 0.65 +0.2
167,222 + MPMX19_02911 0.65 -0.6
167,222 + MPMX19_02911 0.65 -3.0
167,222 + MPMX19_02911 0.65 -1.1
167,223 - MPMX19_02911 0.65 +0.2
167,223 - MPMX19_02911 0.65 -0.6
167,223 - MPMX19_02911 0.65 -1.3
167,223 - MPMX19_02911 0.65 +0.6
167,384 + -0.6
167,384 + -0.8
167,384 + +0.3
167,384 + -0.6
167,384 + +1.7
167,384 + -0.1
167,384 + +1.5
167,384 + +0.7
167,384 + -0.4
167,384 + +0.2
167,384 + -0.8
167,385 - +0.6
167,385 - +2.2
167,385 - +0.4
167,385 - -0.9
167,385 - +1.0
167,385 - +1.0
167,385 - -0.8
167,385 - -1.6
167,385 - -0.1
167,427 + +0.3
167,427 + +1.1
167,427 + -0.3
167,427 + +0.4
167,428 - -1.8
167,428 - +2.4
167,428 - -0.4
167,448 + +1.4
167,448 + +0.4
167,494 - -0.4
167,736 + MPMX19_02912 0.78 +0.1
167,736 + MPMX19_02912 0.78 -1.5
167,736 + MPMX19_02912 0.78 -0.6
167,736 + MPMX19_02912 0.78 +1.0
167,736 + MPMX19_02912 0.78 -0.4
167,737 - MPMX19_02912 0.79 -0.0
167,737 - MPMX19_02912 0.79 -0.5
167,737 - MPMX19_02912 0.79 -0.9
167,869 - +0.7
168,012 - MPMX19_02913 0.23 +0.3
168,035 + MPMX19_02913 0.30 -0.1
168,035 + MPMX19_02913 0.30 -0.6
168,036 - MPMX19_02913 0.30 -1.4
168,036 - MPMX19_02913 0.30 +1.1
168,036 - MPMX19_02913 0.30 +0.9
168,128 + MPMX19_02913 0.57 -0.1
168,128 + MPMX19_02913 0.57 -0.9
168,128 + MPMX19_02913 0.57 -1.5
168,128 + MPMX19_02913 0.57 -0.6
168,128 + MPMX19_02913 0.57 +0.3
168,128 - MPMX19_02913 0.57 -1.6
168,129 - MPMX19_02913 0.57 -0.4
168,129 - MPMX19_02913 0.57 -1.1
168,129 - MPMX19_02913 0.57 -0.3
168,129 - MPMX19_02913 0.57 -0.9
168,129 - MPMX19_02913 0.57 +0.8
168,129 - MPMX19_02913 0.57 -1.1
168,129 - MPMX19_02913 0.57 +0.5
168,137 + MPMX19_02913 0.59 -0.5
168,137 + MPMX19_02913 0.59 -0.6
168,137 + MPMX19_02913 0.59 +0.4
168,137 + MPMX19_02913 0.59 -0.7
168,137 + MPMX19_02913 0.59 -0.6
168,137 + MPMX19_02913 0.59 -0.7
168,137 + MPMX19_02913 0.59 -2.2
168,138 - MPMX19_02913 0.59 -1.0
168,138 - MPMX19_02913 0.59 +1.2
168,138 - MPMX19_02913 0.59 -1.9
168,286 + -0.6
168,287 - -0.4
168,287 - +0.4
168,287 - -0.0
168,287 - +0.4

Or see this region's nucleotide sequence