Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02832 and MPMX19_02833 are separated by 8 nucleotides MPMX19_02833 and MPMX19_02834 overlap by 4 nucleotides MPMX19_02834 and MPMX19_02835 overlap by 4 nucleotides MPMX19_02835 and MPMX19_02836 overlap by 14 nucleotides
MPMX19_02832: MPMX19_02832 - putative cystine transporter YijE, at 74,154 to 75,062
_02832
MPMX19_02833: MPMX19_02833 - Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC, at 75,071 to 75,988
_02833
MPMX19_02834: MPMX19_02834 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 75,985 to 76,860
_02834
MPMX19_02835: MPMX19_02835 - Phosphoribosyl-dephospho-CoA transferase, at 76,857 to 77,525
_02835
MPMX19_02836: MPMX19_02836 - hypothetical protein, at 77,512 to 78,216
_02836
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1 at 75.066 kb on + strand at 75.066 kb on + strand at 75.067 kb on - strand at 75.067 kb on - strand at 75.067 kb on - strand at 75.306 kb on + strand, within MPMX19_02833 at 75.306 kb on + strand, within MPMX19_02833 at 75.306 kb on + strand, within MPMX19_02833 at 75.306 kb on + strand, within MPMX19_02833 at 75.307 kb on - strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.499 kb on + strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.500 kb on - strand, within MPMX19_02833 at 75.668 kb on + strand, within MPMX19_02833 at 75.669 kb on - strand, within MPMX19_02833 at 76.652 kb on + strand, within MPMX19_02834 at 76.652 kb on + strand, within MPMX19_02834 at 76.652 kb on + strand, within MPMX19_02834 at 76.652 kb on + strand, within MPMX19_02834 at 76.653 kb on - strand, within MPMX19_02834 at 76.653 kb on - strand, within MPMX19_02834 at 76.766 kb on + strand, within MPMX19_02834 at 76.766 kb on + strand, within MPMX19_02834 at 76.767 kb on - strand, within MPMX19_02834 at 76.767 kb on - strand, within MPMX19_02834 at 76.767 kb on - strand, within MPMX19_02834 at 76.767 kb on - strand, within MPMX19_02834 at 77.119 kb on + strand, within MPMX19_02835 at 77.119 kb on + strand, within MPMX19_02835 at 77.119 kb on + strand, within MPMX19_02835 at 77.119 kb on + strand, within MPMX19_02835 at 77.120 kb on - strand, within MPMX19_02835 at 77.120 kb on - strand, within MPMX19_02835 at 77.120 kb on - strand, within MPMX19_02835 at 77.120 kb on - strand, within MPMX19_02835 at 77.158 kb on + strand, within MPMX19_02835 at 77.159 kb on - strand, within MPMX19_02835 at 77.159 kb on - strand, within MPMX19_02835 at 77.159 kb on - strand, within MPMX19_02835 at 77.684 kb on + strand, within MPMX19_02836 at 77.685 kb on - strand, within MPMX19_02836 at 77.685 kb on - strand, within MPMX19_02836 at 77.685 kb on - strand, within MPMX19_02836 at 77.685 kb on - strand, within MPMX19_02836 at 77.685 kb on - strand, within MPMX19_02836 at 77.813 kb on + strand, within MPMX19_02836 at 77.813 kb on + strand, within MPMX19_02836 at 77.814 kb on - strand, within MPMX19_02836 at 77.814 kb on - strand, within MPMX19_02836 at 77.814 kb on - strand, within MPMX19_02836 at 77.814 kb on - strand, within MPMX19_02836 at 77.814 kb on - strand, within MPMX19_02836 at 77.814 kb on - strand, within MPMX19_02836
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 75,066 + +1.1 75,066 + -1.3 75,067 - -1.3 75,067 - -1.2 75,067 - -1.3 75,306 + MPMX19_02833 0.26 +0.1 75,306 + MPMX19_02833 0.26 -1.6 75,306 + MPMX19_02833 0.26 +0.3 75,306 + MPMX19_02833 0.26 +0.5 75,307 - MPMX19_02833 0.26 -0.7 75,499 + MPMX19_02833 0.47 +0.8 75,499 + MPMX19_02833 0.47 -1.9 75,499 + MPMX19_02833 0.47 +0.1 75,499 + MPMX19_02833 0.47 -0.9 75,499 + MPMX19_02833 0.47 +0.1 75,499 + MPMX19_02833 0.47 -2.2 75,499 + MPMX19_02833 0.47 -0.3 75,499 + MPMX19_02833 0.47 +0.9 75,499 + MPMX19_02833 0.47 -0.5 75,499 + MPMX19_02833 0.47 +1.2 75,499 + MPMX19_02833 0.47 +0.0 75,499 + MPMX19_02833 0.47 +1.0 75,500 - MPMX19_02833 0.47 -1.1 75,500 - MPMX19_02833 0.47 +0.4 75,500 - MPMX19_02833 0.47 -0.5 75,500 - MPMX19_02833 0.47 +0.7 75,500 - MPMX19_02833 0.47 +0.5 75,500 - MPMX19_02833 0.47 -0.4 75,500 - MPMX19_02833 0.47 -1.7 75,500 - MPMX19_02833 0.47 -0.0 75,500 - MPMX19_02833 0.47 -1.9 75,668 + MPMX19_02833 0.65 -0.7 75,669 - MPMX19_02833 0.65 -0.8 76,652 + MPMX19_02834 0.76 -1.3 76,652 + MPMX19_02834 0.76 -1.3 76,652 + MPMX19_02834 0.76 -0.3 76,652 + MPMX19_02834 0.76 -0.1 76,653 - MPMX19_02834 0.76 -1.9 76,653 - MPMX19_02834 0.76 -1.8 76,766 + MPMX19_02834 0.89 +0.1 76,766 + MPMX19_02834 0.89 -1.3 76,767 - MPMX19_02834 0.89 -1.6 76,767 - MPMX19_02834 0.89 +0.2 76,767 - MPMX19_02834 0.89 +0.0 76,767 - MPMX19_02834 0.89 -1.2 77,119 + MPMX19_02835 0.39 -0.5 77,119 + MPMX19_02835 0.39 -0.3 77,119 + MPMX19_02835 0.39 +0.5 77,119 + MPMX19_02835 0.39 -2.1 77,120 - MPMX19_02835 0.39 -0.5 77,120 - MPMX19_02835 0.39 +0.2 77,120 - MPMX19_02835 0.39 -0.4 77,120 - MPMX19_02835 0.39 +0.8 77,158 + MPMX19_02835 0.45 -0.5 77,159 - MPMX19_02835 0.45 +0.8 77,159 - MPMX19_02835 0.45 -0.0 77,159 - MPMX19_02835 0.45 -0.6 77,684 + MPMX19_02836 0.24 +0.6 77,685 - MPMX19_02836 0.25 -0.6 77,685 - MPMX19_02836 0.25 +0.6 77,685 - MPMX19_02836 0.25 -0.1 77,685 - MPMX19_02836 0.25 +0.4 77,685 - MPMX19_02836 0.25 -0.5 77,813 + MPMX19_02836 0.43 -0.2 77,813 + MPMX19_02836 0.43 -0.8 77,814 - MPMX19_02836 0.43 +0.2 77,814 - MPMX19_02836 0.43 +0.2 77,814 - MPMX19_02836 0.43 -0.2 77,814 - MPMX19_02836 0.43 -0.5 77,814 - MPMX19_02836 0.43 -0.8 77,814 - MPMX19_02836 0.43 -1.2
Or see this region's nucleotide sequence