Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02447

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02446 and MPMX19_02447 are separated by 4 nucleotidesMPMX19_02447 and MPMX19_02448 overlap by 26 nucleotides MPMX19_02446: MPMX19_02446 - Release factor glutamine methyltransferase, at 2,566,867 to 2,567,715 _02446 MPMX19_02447: MPMX19_02447 - Peptide chain release factor RF1, at 2,567,720 to 2,568,805 _02447 MPMX19_02448: MPMX19_02448 - Glutamyl-tRNA reductase, at 2,568,780 to 2,570,111 _02448 Position (kb) 2567 2568 2569Strain fitness (log2 ratio) -1 0 1at 2566.818 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
remove
2,566,818 - -1.3

Or see this region's nucleotide sequence