Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02435

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
2,553,821	-				+0.9
2,553,821	-				-2.0
2,553,821	-				-1.6
2,553,828	+				-0.4
2,554,040	+		MPMX19_02434	0.15	-0.2
2,554,040	+		MPMX19_02434	0.15	+0.2
2,554,040	+		MPMX19_02434	0.15	-1.3
2,554,040	+		MPMX19_02434	0.15	+1.0
2,554,040	+		MPMX19_02434	0.15	+1.1
2,554,040	+		MPMX19_02434	0.15	-1.1
2,554,040	+		MPMX19_02434	0.15	+2.6
2,554,040	+		MPMX19_02434	0.15	-1.1
2,554,040	+		MPMX19_02434	0.15	+0.7
2,554,040	+		MPMX19_02434	0.15	-0.7
2,554,040	+		MPMX19_02434	0.15	+1.1
2,554,040	+		MPMX19_02434	0.15	+0.6
2,554,040	+		MPMX19_02434	0.15	+0.0
2,554,040	+		MPMX19_02434	0.15	-0.3
2,554,040	+		MPMX19_02434	0.15	-0.5
2,554,040	+		MPMX19_02434	0.15	-1.1
2,554,040	+		MPMX19_02434	0.15	-0.2
2,554,040	+		MPMX19_02434	0.15	-1.0
2,554,040	+		MPMX19_02434	0.15	-1.0
2,554,040	+		MPMX19_02434	0.15	+1.1
2,554,040	+		MPMX19_02434	0.15	-0.5
2,554,040	+		MPMX19_02434	0.15	-0.5
2,554,040	+		MPMX19_02434	0.15	-1.8
2,554,040	+		MPMX19_02434	0.15	+0.7
2,554,040	+		MPMX19_02434	0.15	-0.1
2,554,040	-		MPMX19_02434	0.15	-0.4
2,554,041	-		MPMX19_02434	0.15	+0.5
2,554,041	-		MPMX19_02434	0.15	-0.9
2,554,041	-		MPMX19_02434	0.15	-0.6
2,554,041	-		MPMX19_02434	0.15	-2.6
2,554,041	-		MPMX19_02434	0.15	-0.5
2,554,041	-		MPMX19_02434	0.15	+0.6
2,554,041	-		MPMX19_02434	0.15	+0.4
2,554,041	-		MPMX19_02434	0.15	-0.6
2,554,041	-		MPMX19_02434	0.15	-1.2
2,554,041	-		MPMX19_02434	0.15	-1.7
2,554,041	-		MPMX19_02434	0.15	-0.7
2,554,041	-		MPMX19_02434	0.15	-0.7
2,554,041	-		MPMX19_02434	0.15	+0.0
2,554,041	-		MPMX19_02434	0.15	-2.1
2,554,068	-		MPMX19_02434	0.20	+0.3
2,554,068	-		MPMX19_02434	0.20	+0.2
2,554,068	-		MPMX19_02434	0.20	+0.6
2,554,109	+		MPMX19_02434	0.27	-0.3
2,554,109	+		MPMX19_02434	0.27	+0.9
2,554,109	+		MPMX19_02434	0.27	+0.6
2,554,109	+		MPMX19_02434	0.27	+0.1
2,554,109	+		MPMX19_02434	0.27	-1.1
2,554,109	+		MPMX19_02434	0.27	+1.2
2,554,109	+		MPMX19_02434	0.27	-0.4
2,554,109	+		MPMX19_02434	0.27	+0.1
2,554,109	+		MPMX19_02434	0.27	-0.2
2,554,109	+		MPMX19_02434	0.27	-1.7
2,554,109	+		MPMX19_02434	0.27	+0.1
2,554,109	+		MPMX19_02434	0.27	-0.4
2,554,109	+		MPMX19_02434	0.27	+0.1
2,554,109	+		MPMX19_02434	0.27	+0.5
2,554,110	-		MPMX19_02434	0.27	+0.6
2,554,110	-		MPMX19_02434	0.27	-0.8
2,554,110	-		MPMX19_02434	0.27	-0.5
2,554,110	-		MPMX19_02434	0.27	-0.2
2,554,110	-		MPMX19_02434	0.27	-0.3
2,554,110	-		MPMX19_02434	0.27	+1.3
2,554,110	-		MPMX19_02434	0.27	+0.2
2,554,110	-		MPMX19_02434	0.27	+0.3
2,554,110	-		MPMX19_02434	0.27	-0.0
2,554,110	-		MPMX19_02434	0.27	-0.1
2,554,110	-		MPMX19_02434	0.27	-0.4
2,554,110	-		MPMX19_02434	0.27	-1.8
2,554,475	+		MPMX19_02434	0.88	-1.6
2,554,476	-		MPMX19_02434	0.88	+0.0
2,554,545	+				+0.9
2,554,545	+				-0.3
2,554,545	+				+0.9
2,554,545	+				-0.7
2,554,545	+				+0.7
2,554,545	+				-1.0
2,554,546	-				-0.5
2,554,546	-				-1.1
2,554,546	-				+0.8
2,554,546	-				+0.4
2,554,546	-				-0.4
2,554,546	-				+0.9
2,554,546	-				+0.2
2,554,546	-				-0.5
2,554,546	-				+0.9
2,554,632	+				-0.1
2,554,632	+				-1.5
2,554,632	+				-0.3
2,554,633	-				-1.1
2,554,633	-				+0.4
2,554,677	+				+0.3
2,554,677	+				+2.9
2,554,678	-				+0.3
2,554,678	-				-1.0
2,554,678	-				+1.0
2,554,678	-				-1.7
2,554,678	-				-1.0
2,554,678	-				+1.0
2,554,678	-				-0.0
2,554,678	-				-1.7
2,554,678	-				-1.5
2,554,685	+				+0.9
2,554,685	+				-1.1
2,554,685	+				-0.8
2,554,685	+				+0.7
2,554,685	+				-2.0
2,554,685	+				+0.2
2,554,685	+				-1.5
2,554,686	-				+0.4
2,554,686	-				+1.0
2,554,686	-				+0.6
2,554,686	-				-0.0
2,554,686	-				-0.2
2,554,697	+				-0.7
2,554,697	+				+0.3
2,554,697	+				-0.7
2,554,697	+				-1.6
2,554,698	-				-1.2
2,554,698	-				-0.4
2,554,698	-				-2.0
2,554,698	-				-1.3
2,555,042	+		MPMX19_02435	0.53	-0.8
2,555,042	+		MPMX19_02435	0.53	+0.6
2,555,042	+		MPMX19_02435	0.53	-0.2
2,555,042	+		MPMX19_02435	0.53	-0.5
2,555,042	+		MPMX19_02435	0.53	-0.3
2,555,042	+		MPMX19_02435	0.53	+0.5
2,555,042	+		MPMX19_02435	0.53	+0.1
2,555,042	+		MPMX19_02435	0.53	-1.7
2,555,042	+		MPMX19_02435	0.53	+0.9
2,555,042	+		MPMX19_02435	0.53	+0.0
2,555,042	+		MPMX19_02435	0.53	+0.3
2,555,042	+		MPMX19_02435	0.53	+0.6
2,555,042	+		MPMX19_02435	0.53	+0.3
2,555,042	+		MPMX19_02435	0.53	+0.2
2,555,042	+		MPMX19_02435	0.53	+1.1
2,555,042	+		MPMX19_02435	0.53	+0.6
2,555,042	+		MPMX19_02435	0.53	-1.0
2,555,042	+		MPMX19_02435	0.53	+1.2
2,555,042	+		MPMX19_02435	0.53	+0.6
2,555,042	+		MPMX19_02435	0.53	-1.5
2,555,042	+		MPMX19_02435	0.53	-0.0
2,555,042	+		MPMX19_02435	0.53	-1.0
2,555,042	+		MPMX19_02435	0.53	-1.3
2,555,043	-		MPMX19_02435	0.53	+0.0
2,555,043	-		MPMX19_02435	0.53	-1.1
2,555,043	-		MPMX19_02435	0.53	-0.0
2,555,043	-		MPMX19_02435	0.53	+0.4
2,555,043	-		MPMX19_02435	0.53	-0.5
2,555,043	-		MPMX19_02435	0.53	+0.7
2,555,043	-		MPMX19_02435	0.53	+0.3
2,555,043	-		MPMX19_02435	0.53	-0.8
2,555,043	-		MPMX19_02435	0.53	-1.1
2,555,043	-		MPMX19_02435	0.53	-0.1
2,555,043	-		MPMX19_02435	0.53	-1.0
2,555,043	-		MPMX19_02435	0.53	+0.3
2,555,043	-		MPMX19_02435	0.53	+0.3
2,555,043	-		MPMX19_02435	0.53	-1.3
2,555,043	-		MPMX19_02435	0.53	+0.3
2,555,043	-		MPMX19_02435	0.53	-1.0
2,555,043	-		MPMX19_02435	0.53	+0.2
2,555,043	-		MPMX19_02435	0.53	+0.1
2,555,043	-		MPMX19_02435	0.53	-1.5
2,555,043	-		MPMX19_02435	0.53	-1.0
2,555,105	+		MPMX19_02435	0.64	+0.0
2,555,105	+		MPMX19_02435	0.64	+0.8
2,555,105	+		MPMX19_02435	0.64	-1.0
2,555,105	+		MPMX19_02435	0.64	+0.3
2,555,105	+		MPMX19_02435	0.64	-0.1
2,555,105	+		MPMX19_02435	0.64	-1.2
2,555,105	+		MPMX19_02435	0.64	+1.3
2,555,105	+		MPMX19_02435	0.64	+0.1
2,555,105	+		MPMX19_02435	0.64	-0.3
2,555,105	+		MPMX19_02435	0.64	-0.3
2,555,105	+		MPMX19_02435	0.64	-0.1
2,555,105	+		MPMX19_02435	0.64	-0.1
2,555,105	+		MPMX19_02435	0.64	-0.7
2,555,105	+		MPMX19_02435	0.64	-2.2
2,555,105	+		MPMX19_02435	0.64	-0.7
2,555,106	-		MPMX19_02435	0.64	-1.3
2,555,106	-		MPMX19_02435	0.64	-1.0
2,555,106	-		MPMX19_02435	0.64	-0.7
2,555,106	-		MPMX19_02435	0.64	+0.5
2,555,106	-		MPMX19_02435	0.64	-1.0
2,555,106	-		MPMX19_02435	0.64	-0.5
2,555,106	-		MPMX19_02435	0.64	+1.3
2,555,106	-		MPMX19_02435	0.64	-0.1
2,555,106	-		MPMX19_02435	0.64	+0.0
2,555,106	-		MPMX19_02435	0.64	-0.3
2,555,106	-		MPMX19_02435	0.64	+0.7
2,555,106	-		MPMX19_02435	0.64	+0.7
2,555,106	-		MPMX19_02435	0.64	+0.2
2,555,106	-		MPMX19_02435	0.64	+0.6
2,555,106	-		MPMX19_02435	0.64	-0.4
2,555,106	-		MPMX19_02435	0.64	-0.9
2,555,106	-		MPMX19_02435	0.64	-0.5
2,555,317	+				+0.3
2,555,317	+				-1.1
2,555,317	+				+0.6
2,555,317	+				-0.0
2,555,317	+				+0.5
2,555,317	+				-0.1
2,555,317	+				-1.3
2,555,318	-				+1.0
2,555,318	-				+0.3
2,555,318	-				-0.8
2,555,318	-				-0.7
2,555,498	+		MPMX19_02436	0.29	-1.3
2,555,498	+		MPMX19_02436	0.29	-0.4
2,555,498	+		MPMX19_02436	0.29	+0.6
2,555,498	+		MPMX19_02436	0.29	-0.5
2,555,498	+		MPMX19_02436	0.29	-1.1
2,555,498	+		MPMX19_02436	0.29	-1.5
2,555,498	+		MPMX19_02436	0.29	+0.0
2,555,498	+		MPMX19_02436	0.29	-1.0
2,555,498	+		MPMX19_02436	0.29	+0.3
2,555,498	+		MPMX19_02436	0.29	+0.0
2,555,498	+		MPMX19_02436	0.29	-0.0
2,555,498	+		MPMX19_02436	0.29	-0.5
2,555,498	+		MPMX19_02436	0.29	+0.1
2,555,498	+		MPMX19_02436	0.29	-0.6
2,555,498	+		MPMX19_02436	0.29	-2.4
2,555,498	+		MPMX19_02436	0.29	-0.3
2,555,498	+		MPMX19_02436	0.29	+2.2
2,555,498	+		MPMX19_02436	0.29	-1.5
2,555,499	-		MPMX19_02436	0.29	-0.9
2,555,499	-		MPMX19_02436	0.29	+0.0
2,555,499	-		MPMX19_02436	0.29	+0.6
2,555,499	-		MPMX19_02436	0.29	-0.9
2,555,499	-		MPMX19_02436	0.29	+0.3
2,555,499	-		MPMX19_02436	0.29	-1.0
2,555,499	-		MPMX19_02436	0.29	+1.4
2,555,499	-		MPMX19_02436	0.29	+0.0
2,555,499	-		MPMX19_02436	0.29	-0.1
2,555,499	-		MPMX19_02436	0.29	-1.1
2,555,499	-		MPMX19_02436	0.29	-1.0
2,555,499	-		MPMX19_02436	0.29	-1.0
2,555,499	-		MPMX19_02436	0.29	-1.0
2,555,499	-		MPMX19_02436	0.29	+1.0
2,555,499	-		MPMX19_02436	0.29	+0.2
2,555,499	-		MPMX19_02436	0.29	+0.3
2,555,499	-		MPMX19_02436	0.29	-2.3
2,555,499	-		MPMX19_02436	0.29	-1.6
2,555,499	-		MPMX19_02436	0.29	+1.4
2,555,499	-		MPMX19_02436	0.29	+1.4
2,555,618	+		MPMX19_02436	0.49	-1.0
2,555,618	+		MPMX19_02436	0.49	-0.3
2,555,618	+		MPMX19_02436	0.49	-0.7
2,555,618	+		MPMX19_02436	0.49	-0.6
2,555,618	+		MPMX19_02436	0.49	+1.3
2,555,618	+		MPMX19_02436	0.49	+0.2
2,555,618	+		MPMX19_02436	0.49	-0.1
2,555,618	+		MPMX19_02436	0.49	-1.0
2,555,618	+		MPMX19_02436	0.49	+0.3
2,555,618	+		MPMX19_02436	0.49	-1.0
2,555,618	+		MPMX19_02436	0.49	+0.3
2,555,618	+		MPMX19_02436	0.49	-0.2
2,555,618	+		MPMX19_02436	0.49	+1.9
2,555,618	+		MPMX19_02436	0.49	-1.2
2,555,618	+		MPMX19_02436	0.49	-0.3
2,555,618	+		MPMX19_02436	0.49	+0.5
2,555,618	+		MPMX19_02436	0.49	+0.5
2,555,619	-		MPMX19_02436	0.50	+0.2
2,555,619	-		MPMX19_02436	0.50	-1.1
2,555,619	-		MPMX19_02436	0.50	-0.8
2,555,619	-		MPMX19_02436	0.50	-0.7
2,555,619	-		MPMX19_02436	0.50	-0.4
2,555,619	-		MPMX19_02436	0.50	+0.3
2,555,619	-		MPMX19_02436	0.50	+0.3
2,555,619	-		MPMX19_02436	0.50	-0.3
2,555,619	-		MPMX19_02436	0.50	-0.2
2,555,619	-		MPMX19_02436	0.50	+0.0
2,555,619	-		MPMX19_02436	0.50	-1.3
2,555,619	-		MPMX19_02436	0.50	-1.1
2,555,619	-		MPMX19_02436	0.50	+1.1
2,555,619	-		MPMX19_02436	0.50	+0.0
2,555,619	-		MPMX19_02436	0.50	+0.7
2,555,619	-		MPMX19_02436	0.50	-1.0
2,555,619	-		MPMX19_02436	0.50	+0.3
2,555,619	-		MPMX19_02436	0.50	+0.6
2,555,619	-		MPMX19_02436	0.50	+0.0
2,555,619	-		MPMX19_02436	0.50	+0.4
2,555,619	-		MPMX19_02436	0.50	-1.2
2,555,619	-		MPMX19_02436	0.50	-0.8
2,555,619	-		MPMX19_02436	0.50	+1.2
2,555,619	-		MPMX19_02436	0.50	+0.9
2,555,619	-		MPMX19_02436	0.50	+0.5
2,555,619	-		MPMX19_02436	0.50	+0.4
2,555,619	-		MPMX19_02436	0.50	-1.1
2,555,619	-		MPMX19_02436	0.50	+0.3
2,555,619	-		MPMX19_02436	0.50	-2.9
2,555,677	+		MPMX19_02436	0.59	+1.0
2,555,677	+		MPMX19_02436	0.59	-1.3
2,555,677	+		MPMX19_02436	0.59	+0.0
2,555,677	+		MPMX19_02436	0.59	-1.4
2,555,678	-		MPMX19_02436	0.60	-1.7
2,555,678	-		MPMX19_02436	0.60	-0.3
2,555,678	-		MPMX19_02436	0.60	-0.6
2,555,678	-		MPMX19_02436	0.60	+0.0
2,555,678	-		MPMX19_02436	0.60	+1.9
2,555,678	-		MPMX19_02436	0.60	-0.4
2,555,678	-		MPMX19_02436	0.60	+0.7
2,555,678	-		MPMX19_02436	0.60	-1.5
2,555,678	-		MPMX19_02436	0.60	+0.6
2,555,678	-		MPMX19_02436	0.60	+0.4
2,555,735	+		MPMX19_02436	0.69	-0.1
2,555,735	+		MPMX19_02436	0.69	-0.8
2,555,735	+		MPMX19_02436	0.69	+1.9
2,555,735	+		MPMX19_02436	0.69	+0.5
2,555,735	+		MPMX19_02436	0.69	-1.0
2,555,735	+		MPMX19_02436	0.69	-0.5
2,555,735	+		MPMX19_02436	0.69	-0.4
2,555,735	+		MPMX19_02436	0.69	-0.8
2,555,735	+		MPMX19_02436	0.69	-1.7
2,555,735	+		MPMX19_02436	0.69	-0.7
2,555,735	+		MPMX19_02436	0.69	-2.0
2,555,735	+		MPMX19_02436	0.69	-1.6
2,555,735	+		MPMX19_02436	0.69	-0.6
2,555,735	+		MPMX19_02436	0.69	+1.2
2,555,736	-		MPMX19_02436	0.70	-0.2
2,555,736	-		MPMX19_02436	0.70	-1.3
2,555,736	-		MPMX19_02436	0.70	-1.3
2,555,736	-		MPMX19_02436	0.70	-0.6
2,555,736	-		MPMX19_02436	0.70	+0.1
2,555,736	-		MPMX19_02436	0.70	-1.5
2,555,736	-		MPMX19_02436	0.70	-0.0
2,555,736	-		MPMX19_02436	0.70	+1.3
2,555,736	-		MPMX19_02436	0.70	-0.6
2,555,736	-		MPMX19_02436	0.70	-0.2
2,555,736	-		MPMX19_02436	0.70	-0.2
2,555,736	-		MPMX19_02436	0.70	-1.7
2,555,736	-		MPMX19_02436	0.70	-0.1
2,555,736	-		MPMX19_02436	0.70	-0.4
2,555,736	-		MPMX19_02436	0.70	-0.7
2,555,736	-		MPMX19_02436	0.70	-0.4
2,555,766	+		MPMX19_02436	0.75	+1.2
2,555,766	+		MPMX19_02436	0.75	-1.2
2,555,766	+		MPMX19_02436	0.75	-1.3
2,555,767	-		MPMX19_02436	0.75	+1.1
2,555,767	-		MPMX19_02436	0.75	-0.5
2,555,767	-		MPMX19_02436	0.75	-0.4
2,555,903	+				+0.8
2,555,903	+				-0.6
2,555,903	+				-1.5
2,555,903	+				-1.0
2,555,903	+				-0.1
2,555,903	+				-0.1
2,555,904	-				-1.6
2,555,904	-				-0.3
2,555,940	+				+0.6
2,555,940	+				-0.1
2,555,940	+				+0.3
2,555,940	+				+1.1
2,555,940	+				-1.0
2,555,940	+				+0.5
2,555,940	+				+0.3
2,555,940	+				-1.3
2,555,940	+				-0.7
2,555,941	-				+1.4
2,555,941	-				+0.3
2,555,941	-				+0.0
2,555,941	-				-0.0
2,555,941	-				-0.1
2,555,941	-				+0.3
2,555,941	-				+0.0
2,555,941	-				-0.0
2,555,941	-				-0.7
2,555,941	-				-0.2
2,555,941	-				-1.1
2,556,248	+		MPMX19_02437	0.22	-0.9
2,556,249	-		MPMX19_02437	0.23	+0.3