Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01857

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01855 and MPMX19_01856 are separated by 119 nucleotidesMPMX19_01856 and MPMX19_01857 are separated by 158 nucleotidesMPMX19_01857 and MPMX19_01858 are separated by 267 nucleotidesMPMX19_01858 and MPMX19_01859 overlap by 4 nucleotides MPMX19_01855: MPMX19_01855 - putative intracellular septation protein A, at 1,933,307 to 1,933,873 _01855 MPMX19_01856: MPMX19_01856 - Sec-independent protein translocase protein TatA, at 1,933,993 to 1,934,301 _01856 MPMX19_01857: MPMX19_01857 - hypothetical protein, at 1,934,460 to 1,935,614 _01857 MPMX19_01858: MPMX19_01858 - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP, at 1,935,882 to 1,936,280 _01858 MPMX19_01859: MPMX19_01859 - 3'-5' exonuclease DinG, at 1,936,277 to 1,938,502 _01859 Position (kb) 1934 1935 1936Strain fitness (log2 ratio) -2 -1 0 1 2at 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.984 kb on + strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1933.985 kb on - strandat 1934.368 kb on + strandat 1934.368 kb on + strandat 1934.368 kb on + strandat 1934.368 kb on + strandat 1934.368 kb on + strandat 1934.368 kb on + strandat 1934.368 kb on + strandat 1934.369 kb on - strandat 1934.369 kb on - strandat 1934.369 kb on - strandat 1934.369 kb on - strandat 1934.369 kb on - strandat 1934.369 kb on - strandat 1934.502 kb on + strandat 1934.502 kb on + strandat 1934.502 kb on + strandat 1934.664 kb on + strand, within MPMX19_01857at 1934.664 kb on + strand, within MPMX19_01857at 1934.664 kb on + strand, within MPMX19_01857at 1934.664 kb on + strand, within MPMX19_01857at 1934.664 kb on + strand, within MPMX19_01857at 1934.664 kb on + strand, within MPMX19_01857at 1934.665 kb on - strand, within MPMX19_01857at 1934.665 kb on - strand, within MPMX19_01857at 1934.665 kb on - strand, within MPMX19_01857at 1934.665 kb on - strand, within MPMX19_01857at 1934.665 kb on - strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.760 kb on + strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1934.761 kb on - strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.391 kb on + strand, within MPMX19_01857at 1935.391 kb on + strand, within MPMX19_01857at 1935.392 kb on - strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.794 kb on - strandat 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.529 kb on + strand, within MPMX19_01859at 1936.530 kb on - strand, within MPMX19_01859at 1936.530 kb on - strand, within MPMX19_01859

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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1,933,984 + -0.3
1,933,984 + -0.4
1,933,984 + -1.8
1,933,984 + -1.2
1,933,984 + -0.8
1,933,984 + -0.8
1,933,984 + +0.7
1,933,984 + -1.3
1,933,984 + -1.1
1,933,984 + -1.2
1,933,984 + -0.0
1,933,985 - -0.3
1,933,985 - -0.3
1,933,985 - +0.2
1,933,985 - -1.6
1,933,985 - -0.5
1,933,985 - -0.8
1,933,985 - +0.5
1,933,985 - -0.4
1,933,985 - +0.7
1,934,368 + +0.0
1,934,368 + -1.6
1,934,368 + -1.3
1,934,368 + +0.9
1,934,368 + -1.9
1,934,368 + +1.8
1,934,368 + +0.1
1,934,369 - -0.5
1,934,369 - +0.1
1,934,369 - +0.5
1,934,369 - +0.7
1,934,369 - -0.6
1,934,369 - +0.4
1,934,502 + -0.3
1,934,502 + +0.9
1,934,502 + +0.7
1,934,664 + MPMX19_01857 0.18 +0.5
1,934,664 + MPMX19_01857 0.18 -1.1
1,934,664 + MPMX19_01857 0.18 -0.8
1,934,664 + MPMX19_01857 0.18 -0.1
1,934,664 + MPMX19_01857 0.18 +0.4
1,934,664 + MPMX19_01857 0.18 -1.1
1,934,665 - MPMX19_01857 0.18 +0.7
1,934,665 - MPMX19_01857 0.18 +0.8
1,934,665 - MPMX19_01857 0.18 -0.5
1,934,665 - MPMX19_01857 0.18 +0.0
1,934,665 - MPMX19_01857 0.18 -0.6
1,934,760 + MPMX19_01857 0.26 -0.8
1,934,760 + MPMX19_01857 0.26 -0.3
1,934,760 + MPMX19_01857 0.26 +0.1
1,934,760 + MPMX19_01857 0.26 -0.1
1,934,760 + MPMX19_01857 0.26 +0.4
1,934,760 + MPMX19_01857 0.26 -0.4
1,934,760 + MPMX19_01857 0.26 +0.1
1,934,760 + MPMX19_01857 0.26 -0.9
1,934,760 + MPMX19_01857 0.26 +0.9
1,934,760 + MPMX19_01857 0.26 -0.9
1,934,760 + MPMX19_01857 0.26 -0.3
1,934,760 + MPMX19_01857 0.26 +0.5
1,934,760 + MPMX19_01857 0.26 +0.5
1,934,760 + MPMX19_01857 0.26 -1.5
1,934,760 + MPMX19_01857 0.26 -0.5
1,934,760 + MPMX19_01857 0.26 +0.7
1,934,760 + MPMX19_01857 0.26 -0.8
1,934,760 + MPMX19_01857 0.26 +0.7
1,934,760 + MPMX19_01857 0.26 -1.1
1,934,760 + MPMX19_01857 0.26 +0.5
1,934,760 + MPMX19_01857 0.26 +0.4
1,934,760 + MPMX19_01857 0.26 -1.5
1,934,760 + MPMX19_01857 0.26 -0.5
1,934,760 + MPMX19_01857 0.26 +1.5
1,934,760 + MPMX19_01857 0.26 -0.8
1,934,760 + MPMX19_01857 0.26 +0.4
1,934,760 + MPMX19_01857 0.26 +0.4
1,934,760 + MPMX19_01857 0.26 +1.2
1,934,761 - MPMX19_01857 0.26 -2.6
1,934,761 - MPMX19_01857 0.26 -0.3
1,934,761 - MPMX19_01857 0.26 -0.4
1,934,761 - MPMX19_01857 0.26 -0.0
1,934,761 - MPMX19_01857 0.26 +1.0
1,934,761 - MPMX19_01857 0.26 -0.2
1,934,761 - MPMX19_01857 0.26 -0.1
1,934,761 - MPMX19_01857 0.26 +0.5
1,934,761 - MPMX19_01857 0.26 +0.9
1,934,761 - MPMX19_01857 0.26 -0.2
1,934,761 - MPMX19_01857 0.26 +0.7
1,935,384 + MPMX19_01857 0.80 +1.1
1,935,384 + MPMX19_01857 0.80 +1.2
1,935,384 + MPMX19_01857 0.80 +1.2
1,935,384 + MPMX19_01857 0.80 +1.0
1,935,384 + MPMX19_01857 0.80 -0.4
1,935,384 + MPMX19_01857 0.80 -1.3
1,935,385 - MPMX19_01857 0.80 -0.3
1,935,385 - MPMX19_01857 0.80 -0.7
1,935,385 - MPMX19_01857 0.80 -1.2
1,935,385 - MPMX19_01857 0.80 -0.1
1,935,385 - MPMX19_01857 0.80 -0.3
1,935,385 - MPMX19_01857 0.80 -0.2
1,935,391 + MPMX19_01857 0.81 -1.1
1,935,391 + MPMX19_01857 0.81 -0.9
1,935,392 - MPMX19_01857 0.81 -0.5
1,935,468 + MPMX19_01857 0.87 -1.5
1,935,468 + MPMX19_01857 0.87 -1.3
1,935,468 + MPMX19_01857 0.87 -0.6
1,935,468 + MPMX19_01857 0.87 -0.0
1,935,468 + MPMX19_01857 0.87 -0.3
1,935,468 + MPMX19_01857 0.87 -0.4
1,935,468 + MPMX19_01857 0.87 -0.9
1,935,468 + MPMX19_01857 0.87 -1.4
1,935,468 + MPMX19_01857 0.87 +0.2
1,935,468 + MPMX19_01857 0.87 -1.2
1,935,468 + MPMX19_01857 0.87 +0.8
1,935,469 - MPMX19_01857 0.87 -0.5
1,935,469 - MPMX19_01857 0.87 +0.5
1,935,469 - MPMX19_01857 0.87 -1.1
1,935,469 - MPMX19_01857 0.87 +0.3
1,935,469 - MPMX19_01857 0.87 +0.8
1,935,469 - MPMX19_01857 0.87 -0.1
1,935,469 - MPMX19_01857 0.87 -0.1
1,935,469 - MPMX19_01857 0.87 -0.0
1,935,469 - MPMX19_01857 0.87 -1.1
1,935,469 - MPMX19_01857 0.87 +0.5
1,935,794 - -0.6
1,936,016 + MPMX19_01858 0.34 -0.6
1,936,016 + MPMX19_01858 0.34 -1.6
1,936,016 + MPMX19_01858 0.34 -1.0
1,936,016 + MPMX19_01858 0.34 +1.3
1,936,016 + MPMX19_01858 0.34 +0.6
1,936,016 + MPMX19_01858 0.34 -1.0
1,936,016 + MPMX19_01858 0.34 +1.7
1,936,016 + MPMX19_01858 0.34 -2.0
1,936,016 + MPMX19_01858 0.34 -0.9
1,936,017 - MPMX19_01858 0.34 +0.1
1,936,017 - MPMX19_01858 0.34 -0.6
1,936,017 - MPMX19_01858 0.34 +0.7
1,936,017 - MPMX19_01858 0.34 +0.7
1,936,017 - MPMX19_01858 0.34 -1.3
1,936,185 + MPMX19_01858 0.76 -0.6
1,936,185 + MPMX19_01858 0.76 -1.3
1,936,185 + MPMX19_01858 0.76 -0.5
1,936,185 + MPMX19_01858 0.76 +0.9
1,936,185 + MPMX19_01858 0.76 -1.5
1,936,185 + MPMX19_01858 0.76 -0.3
1,936,185 + MPMX19_01858 0.76 -0.2
1,936,185 + MPMX19_01858 0.76 +0.2
1,936,185 + MPMX19_01858 0.76 -1.8
1,936,185 + MPMX19_01858 0.76 -1.1
1,936,185 + MPMX19_01858 0.76 -0.9
1,936,185 + MPMX19_01858 0.76 -1.6
1,936,185 + MPMX19_01858 0.76 -0.3
1,936,185 + MPMX19_01858 0.76 -0.3
1,936,185 + MPMX19_01858 0.76 -0.6
1,936,186 - MPMX19_01858 0.76 -0.9
1,936,186 - MPMX19_01858 0.76 -0.0
1,936,186 - MPMX19_01858 0.76 +0.4
1,936,186 - MPMX19_01858 0.76 -1.5
1,936,186 - MPMX19_01858 0.76 +1.3
1,936,186 - MPMX19_01858 0.76 -0.9
1,936,186 - MPMX19_01858 0.76 -0.1
1,936,186 - MPMX19_01858 0.76 +0.7
1,936,186 - MPMX19_01858 0.76 -0.3
1,936,186 - MPMX19_01858 0.76 -0.1
1,936,186 - MPMX19_01858 0.76 -0.8
1,936,186 - MPMX19_01858 0.76 +0.7
1,936,186 - MPMX19_01858 0.76 -0.1
1,936,186 - MPMX19_01858 0.76 -1.0
1,936,186 - MPMX19_01858 0.76 +0.6
1,936,463 + +0.1
1,936,463 + +0.1
1,936,463 + -0.6
1,936,463 + -0.5
1,936,463 + -2.3
1,936,463 + +0.7
1,936,463 + -2.1
1,936,463 + +0.4
1,936,463 + +0.4
1,936,463 + +0.5
1,936,463 + +0.5
1,936,463 + +0.1
1,936,463 + -1.1
1,936,463 + -0.3
1,936,463 + -0.5
1,936,463 + -0.6
1,936,463 + -2.1
1,936,463 + +0.8
1,936,463 + +0.1
1,936,463 + +1.4
1,936,464 - -1.1
1,936,464 - -0.9
1,936,464 - +0.1
1,936,464 - +0.7
1,936,464 - -1.8
1,936,464 - -0.4
1,936,464 - -0.9
1,936,464 - +0.4
1,936,464 - -1.1
1,936,464 - -1.5
1,936,464 - -0.7
1,936,464 - -0.3
1,936,464 - +0.3
1,936,529 + MPMX19_01859 0.11 -1.6
1,936,530 - MPMX19_01859 0.11 -0.6
1,936,530 - MPMX19_01859 0.11 -0.2

Or see this region's nucleotide sequence