Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01168

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01167 and MPMX19_01168 are separated by 915 nucleotidesMPMX19_01168 and MPMX19_01169 overlap by 4 nucleotidesMPMX19_01169 and MPMX19_01170 overlap by 1 nucleotides MPMX19_01167: MPMX19_01167 - tRNA-Asp, at 1,205,781 to 1,205,875 _01167 MPMX19_01168: MPMX19_01168 - Protein-L-isoaspartate O-methyltransferase, at 1,206,791 to 1,207,444 _01168 MPMX19_01169: MPMX19_01169 - 5'-nucleotidase SurE, at 1,207,441 to 1,208,223 _01169 MPMX19_01170: MPMX19_01170 - Serine--tRNA ligase, at 1,208,223 to 1,209,494 _01170 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1206.866 kb on - strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.007 kb on + strand, within MPMX19_01168at 1207.008 kb on - strand, within MPMX19_01168at 1207.008 kb on - strand, within MPMX19_01168at 1207.008 kb on - strand, within MPMX19_01168at 1207.008 kb on - strand, within MPMX19_01168at 1207.008 kb on - strand, within MPMX19_01168at 1207.008 kb on - strand, within MPMX19_01168at 1207.008 kb on - strand, within MPMX19_01168at 1207.009 kb on + strand, within MPMX19_01168at 1207.009 kb on + strand, within MPMX19_01168at 1207.009 kb on + strand, within MPMX19_01168at 1207.010 kb on - strand, within MPMX19_01168at 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.437 kb on + strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.438 kb on - strandat 1207.479 kb on + strandat 1207.479 kb on + strandat 1207.479 kb on + strandat 1207.479 kb on + strandat 1207.480 kb on - strandat 1207.480 kb on - strandat 1207.480 kb on - strandat 1207.480 kb on - strandat 1207.480 kb on - strandat 1207.480 kb on - strandat 1207.496 kb on + strandat 1207.496 kb on + strandat 1207.496 kb on + strandat 1207.497 kb on - strandat 1207.497 kb on - strandat 1207.497 kb on - strandat 1207.497 kb on - strandat 1207.497 kb on - strandat 1207.497 kb on - strandat 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.592 kb on + strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.593 kb on - strand, within MPMX19_01169at 1207.811 kb on + strand, within MPMX19_01169at 1207.811 kb on + strand, within MPMX19_01169at 1207.811 kb on + strand, within MPMX19_01169at 1207.812 kb on - strand, within MPMX19_01169at 1207.812 kb on - strand, within MPMX19_01169at 1207.812 kb on - strand, within MPMX19_01169at 1207.812 kb on - strand, within MPMX19_01169at 1207.812 kb on - strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.883 kb on + strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1207.884 kb on - strand, within MPMX19_01169at 1208.146 kb on + strandat 1208.146 kb on + strandat 1208.146 kb on + strandat 1208.146 kb on + strandat 1208.146 kb on + strandat 1208.146 kb on + strandat 1208.146 kb on + strandat 1208.146 kb on + strandat 1208.147 kb on - strandat 1208.147 kb on - strandat 1208.147 kb on - strandat 1208.147 kb on - strandat 1208.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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1,206,866 - MPMX19_01168 0.11 -0.9
1,207,007 + MPMX19_01168 0.33 -0.9
1,207,007 + MPMX19_01168 0.33 -1.6
1,207,007 + MPMX19_01168 0.33 -2.9
1,207,007 + MPMX19_01168 0.33 -0.4
1,207,007 + MPMX19_01168 0.33 +0.0
1,207,007 + MPMX19_01168 0.33 -1.0
1,207,007 + MPMX19_01168 0.33 -1.6
1,207,007 + MPMX19_01168 0.33 +0.9
1,207,008 - MPMX19_01168 0.33 -0.4
1,207,008 - MPMX19_01168 0.33 -1.6
1,207,008 - MPMX19_01168 0.33 -1.2
1,207,008 - MPMX19_01168 0.33 -0.5
1,207,008 - MPMX19_01168 0.33 -1.7
1,207,008 - MPMX19_01168 0.33 -1.8
1,207,008 - MPMX19_01168 0.33 -0.3
1,207,009 + MPMX19_01168 0.33 -1.6
1,207,009 + MPMX19_01168 0.33 -0.4
1,207,009 + MPMX19_01168 0.33 -0.4
1,207,010 - MPMX19_01168 0.33 -0.7
1,207,437 + -1.0
1,207,437 + +0.1
1,207,437 + -0.6
1,207,437 + -0.3
1,207,437 + +0.2
1,207,437 + -0.7
1,207,437 + +0.0
1,207,437 + -2.3
1,207,437 + -1.0
1,207,437 + -0.1
1,207,437 + -0.7
1,207,437 + +0.4
1,207,437 + -0.5
1,207,437 + +0.0
1,207,437 + -0.7
1,207,437 + -0.4
1,207,437 + -1.7
1,207,437 + +1.3
1,207,437 + +0.5
1,207,438 - -0.4
1,207,438 - -0.7
1,207,438 - -0.2
1,207,438 - +0.9
1,207,438 - -1.5
1,207,438 - -0.7
1,207,438 - -0.7
1,207,438 - -1.4
1,207,438 - +0.7
1,207,438 - -0.3
1,207,438 - -0.4
1,207,438 - +0.9
1,207,438 - -0.4
1,207,438 - -0.1
1,207,438 - -1.5
1,207,438 - +0.6
1,207,438 - -0.6
1,207,438 - -0.5
1,207,438 - -0.6
1,207,438 - -0.9
1,207,438 - -0.5
1,207,479 + +0.9
1,207,479 + +1.0
1,207,479 + -0.4
1,207,479 + +0.3
1,207,480 - -0.2
1,207,480 - -0.7
1,207,480 - +0.0
1,207,480 - -1.5
1,207,480 - -0.7
1,207,480 - -0.9
1,207,496 + +0.3
1,207,496 + -0.4
1,207,496 + -1.9
1,207,497 - -0.0
1,207,497 - -1.3
1,207,497 - +0.2
1,207,497 - -0.1
1,207,497 - -1.3
1,207,497 - -1.5
1,207,592 + MPMX19_01169 0.19 +0.3
1,207,592 + MPMX19_01169 0.19 -0.2
1,207,592 + MPMX19_01169 0.19 -0.5
1,207,592 + MPMX19_01169 0.19 -0.8
1,207,592 + MPMX19_01169 0.19 -0.2
1,207,592 + MPMX19_01169 0.19 +0.2
1,207,592 + MPMX19_01169 0.19 -1.2
1,207,592 + MPMX19_01169 0.19 +0.6
1,207,592 + MPMX19_01169 0.19 -0.3
1,207,592 + MPMX19_01169 0.19 +0.0
1,207,592 + MPMX19_01169 0.19 -2.2
1,207,592 + MPMX19_01169 0.19 -0.2
1,207,592 + MPMX19_01169 0.19 -1.7
1,207,592 + MPMX19_01169 0.19 -0.1
1,207,592 + MPMX19_01169 0.19 +0.3
1,207,592 + MPMX19_01169 0.19 +1.1
1,207,593 - MPMX19_01169 0.19 -0.5
1,207,593 - MPMX19_01169 0.19 -0.4
1,207,593 - MPMX19_01169 0.19 +0.3
1,207,593 - MPMX19_01169 0.19 -0.7
1,207,593 - MPMX19_01169 0.19 -0.8
1,207,593 - MPMX19_01169 0.19 -1.2
1,207,593 - MPMX19_01169 0.19 -0.1
1,207,593 - MPMX19_01169 0.19 -1.2
1,207,593 - MPMX19_01169 0.19 -0.2
1,207,593 - MPMX19_01169 0.19 -0.9
1,207,593 - MPMX19_01169 0.19 -0.1
1,207,593 - MPMX19_01169 0.19 +0.2
1,207,593 - MPMX19_01169 0.19 -1.3
1,207,593 - MPMX19_01169 0.19 -1.1
1,207,811 + MPMX19_01169 0.47 -0.7
1,207,811 + MPMX19_01169 0.47 -0.2
1,207,811 + MPMX19_01169 0.47 -0.4
1,207,812 - MPMX19_01169 0.47 +0.4
1,207,812 - MPMX19_01169 0.47 +1.9
1,207,812 - MPMX19_01169 0.47 -1.3
1,207,812 - MPMX19_01169 0.47 +0.2
1,207,812 - MPMX19_01169 0.47 -0.7
1,207,883 + MPMX19_01169 0.56 -0.2
1,207,883 + MPMX19_01169 0.56 +1.6
1,207,883 + MPMX19_01169 0.56 +1.2
1,207,883 + MPMX19_01169 0.56 +0.2
1,207,883 + MPMX19_01169 0.56 +1.6
1,207,883 + MPMX19_01169 0.56 +1.1
1,207,883 + MPMX19_01169 0.56 +1.2
1,207,883 + MPMX19_01169 0.56 -0.3
1,207,883 + MPMX19_01169 0.56 -0.7
1,207,883 + MPMX19_01169 0.56 -1.0
1,207,884 - MPMX19_01169 0.57 +1.4
1,207,884 - MPMX19_01169 0.57 -1.1
1,207,884 - MPMX19_01169 0.57 -0.3
1,207,884 - MPMX19_01169 0.57 -1.4
1,207,884 - MPMX19_01169 0.57 +0.6
1,207,884 - MPMX19_01169 0.57 +1.0
1,207,884 - MPMX19_01169 0.57 +0.6
1,207,884 - MPMX19_01169 0.57 +1.0
1,207,884 - MPMX19_01169 0.57 -0.3
1,208,146 + -0.6
1,208,146 + +0.6
1,208,146 + -0.5
1,208,146 + -1.2
1,208,146 + -0.7
1,208,146 + -2.0
1,208,146 + -0.7
1,208,146 + -0.1
1,208,147 - +0.6
1,208,147 - +1.6
1,208,147 - -0.4
1,208,147 - -0.8
1,208,147 - -0.2

Or see this region's nucleotide sequence