Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01012

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01011 and MPMX19_01012 are separated by 4 nucleotidesMPMX19_01012 and MPMX19_01013 overlap by 4 nucleotidesMPMX19_01013 and MPMX19_01014 are separated by 4 nucleotides MPMX19_01011: MPMX19_01011 - Molybdopterin molybdenumtransferase, at 1,052,624 to 1,053,853 _01011 MPMX19_01012: MPMX19_01012 - Cyclic pyranopterin monophosphate synthase, at 1,053,858 to 1,054,349 _01012 MPMX19_01013: MPMX19_01013 - putative N-acetyltransferase YsnE, at 1,054,346 to 1,054,855 _01013 MPMX19_01014: MPMX19_01014 - Indole-3-glycerol phosphate synthase, at 1,054,860 to 1,055,663 _01014 Position (kb) 1053 1054 1055Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1052.873 kb on + strand, within MPMX19_01011at 1052.873 kb on + strand, within MPMX19_01011at 1052.873 kb on + strand, within MPMX19_01011at 1053.090 kb on + strand, within MPMX19_01011at 1053.091 kb on - strand, within MPMX19_01011at 1053.091 kb on - strand, within MPMX19_01011at 1053.091 kb on - strand, within MPMX19_01011at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1054.316 kb on + strandat 1054.316 kb on + strandat 1054.316 kb on + strandat 1054.404 kb on + strand, within MPMX19_01013at 1054.404 kb on + strand, within MPMX19_01013at 1054.404 kb on + strand, within MPMX19_01013at 1054.404 kb on + strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.413 kb on + strand, within MPMX19_01013at 1054.413 kb on + strand, within MPMX19_01013at 1054.413 kb on + strand, within MPMX19_01013at 1054.414 kb on - strand, within MPMX19_01013at 1054.414 kb on - strand, within MPMX19_01013at 1054.414 kb on - strand, within MPMX19_01013at 1054.446 kb on + strand, within MPMX19_01013at 1054.447 kb on - strand, within MPMX19_01013at 1054.447 kb on - strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.602 kb on + strand, within MPMX19_01013at 1054.729 kb on - strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.744 kb on - strand, within MPMX19_01013at 1054.744 kb on - strand, within MPMX19_01013at 1054.981 kb on + strand, within MPMX19_01014at 1054.981 kb on + strand, within MPMX19_01014at 1054.981 kb on + strand, within MPMX19_01014at 1054.981 kb on + strand, within MPMX19_01014at 1054.981 kb on + strand, within MPMX19_01014at 1054.981 kb on + strand, within MPMX19_01014at 1054.982 kb on - strand, within MPMX19_01014at 1054.982 kb on - strand, within MPMX19_01014at 1054.982 kb on - strand, within MPMX19_01014at 1055.234 kb on + strand, within MPMX19_01014at 1055.234 kb on + strand, within MPMX19_01014at 1055.235 kb on - strand, within MPMX19_01014at 1055.235 kb on - strand, within MPMX19_01014at 1055.235 kb on - strand, within MPMX19_01014at 1055.273 kb on - strand, within MPMX19_01014at 1055.339 kb on - strand, within MPMX19_01014at 1055.339 kb on - strand, within MPMX19_01014at 1055.339 kb on - strand, within MPMX19_01014

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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1,052,873 + MPMX19_01011 0.20 -0.7
1,052,873 + MPMX19_01011 0.20 +0.5
1,052,873 + MPMX19_01011 0.20 -1.2
1,053,090 + MPMX19_01011 0.38 +0.3
1,053,091 - MPMX19_01011 0.38 -0.7
1,053,091 - MPMX19_01011 0.38 +0.2
1,053,091 - MPMX19_01011 0.38 +0.4
1,053,970 + MPMX19_01012 0.23 -1.0
1,053,970 + MPMX19_01012 0.23 +1.3
1,053,970 + MPMX19_01012 0.23 +1.0
1,053,970 + MPMX19_01012 0.23 -0.0
1,053,970 + MPMX19_01012 0.23 -1.7
1,053,970 + MPMX19_01012 0.23 +0.6
1,053,970 + MPMX19_01012 0.23 -0.4
1,053,971 - MPMX19_01012 0.23 -0.7
1,053,971 - MPMX19_01012 0.23 -2.2
1,053,971 - MPMX19_01012 0.23 -1.3
1,053,971 - MPMX19_01012 0.23 -0.0
1,053,971 - MPMX19_01012 0.23 -1.7
1,053,971 - MPMX19_01012 0.23 -1.0
1,054,316 + -0.5
1,054,316 + -1.7
1,054,316 + -1.3
1,054,404 + MPMX19_01013 0.11 +0.8
1,054,404 + MPMX19_01013 0.11 -1.4
1,054,404 + MPMX19_01013 0.11 +0.3
1,054,404 + MPMX19_01013 0.11 -2.2
1,054,405 - MPMX19_01013 0.12 +0.1
1,054,405 - MPMX19_01013 0.12 -0.5
1,054,405 - MPMX19_01013 0.12 -0.6
1,054,405 - MPMX19_01013 0.12 -0.1
1,054,413 + MPMX19_01013 0.13 -1.4
1,054,413 + MPMX19_01013 0.13 -2.2
1,054,413 + MPMX19_01013 0.13 -1.7
1,054,414 - MPMX19_01013 0.13 +0.6
1,054,414 - MPMX19_01013 0.13 -0.0
1,054,414 - MPMX19_01013 0.13 +1.6
1,054,446 + MPMX19_01013 0.20 -0.4
1,054,447 - MPMX19_01013 0.20 +0.3
1,054,447 - MPMX19_01013 0.20 +0.3
1,054,581 + MPMX19_01013 0.46 -2.4
1,054,581 + MPMX19_01013 0.46 +3.6
1,054,581 + MPMX19_01013 0.46 -0.0
1,054,581 + MPMX19_01013 0.46 -1.3
1,054,581 + MPMX19_01013 0.46 -1.0
1,054,581 + MPMX19_01013 0.46 -0.3
1,054,581 + MPMX19_01013 0.46 -2.1
1,054,581 + MPMX19_01013 0.46 -0.3
1,054,581 + MPMX19_01013 0.46 +0.8
1,054,581 + MPMX19_01013 0.46 +0.5
1,054,581 + MPMX19_01013 0.46 +0.3
1,054,581 + MPMX19_01013 0.46 +0.9
1,054,581 + MPMX19_01013 0.46 +0.2
1,054,581 + MPMX19_01013 0.46 +0.5
1,054,581 + MPMX19_01013 0.46 +0.6
1,054,581 + MPMX19_01013 0.46 -0.2
1,054,581 + MPMX19_01013 0.46 -0.5
1,054,581 + MPMX19_01013 0.46 +0.1
1,054,581 + MPMX19_01013 0.46 -0.5
1,054,581 + MPMX19_01013 0.46 -0.6
1,054,581 + MPMX19_01013 0.46 +0.5
1,054,581 + MPMX19_01013 0.46 +0.2
1,054,581 + MPMX19_01013 0.46 -0.7
1,054,581 + MPMX19_01013 0.46 -0.0
1,054,581 + MPMX19_01013 0.46 -1.0
1,054,581 + MPMX19_01013 0.46 -0.4
1,054,581 + MPMX19_01013 0.46 -1.0
1,054,581 + MPMX19_01013 0.46 -2.8
1,054,581 + MPMX19_01013 0.46 +0.7
1,054,581 + MPMX19_01013 0.46 -1.2
1,054,581 - MPMX19_01013 0.46 -0.7
1,054,582 - MPMX19_01013 0.46 -0.4
1,054,582 - MPMX19_01013 0.46 -0.2
1,054,582 - MPMX19_01013 0.46 +0.1
1,054,582 - MPMX19_01013 0.46 -0.4
1,054,582 - MPMX19_01013 0.46 +1.6
1,054,582 - MPMX19_01013 0.46 +0.2
1,054,582 - MPMX19_01013 0.46 +0.9
1,054,582 - MPMX19_01013 0.46 -0.5
1,054,582 - MPMX19_01013 0.46 +1.5
1,054,582 - MPMX19_01013 0.46 -1.1
1,054,582 - MPMX19_01013 0.46 -1.4
1,054,582 - MPMX19_01013 0.46 +1.8
1,054,582 - MPMX19_01013 0.46 -0.9
1,054,582 - MPMX19_01013 0.46 +0.2
1,054,582 - MPMX19_01013 0.46 +0.6
1,054,582 - MPMX19_01013 0.46 +0.7
1,054,582 - MPMX19_01013 0.46 -2.7
1,054,582 - MPMX19_01013 0.46 -0.1
1,054,582 - MPMX19_01013 0.46 -0.1
1,054,582 - MPMX19_01013 0.46 -0.7
1,054,582 - MPMX19_01013 0.46 -0.9
1,054,582 - MPMX19_01013 0.46 -0.7
1,054,582 - MPMX19_01013 0.46 -0.1
1,054,582 - MPMX19_01013 0.46 +1.0
1,054,582 - MPMX19_01013 0.46 -2.6
1,054,582 - MPMX19_01013 0.46 -0.7
1,054,582 - MPMX19_01013 0.46 -2.2
1,054,582 - MPMX19_01013 0.46 -0.4
1,054,582 - MPMX19_01013 0.46 +1.0
1,054,582 - MPMX19_01013 0.46 +0.6
1,054,582 - MPMX19_01013 0.46 -0.5
1,054,582 - MPMX19_01013 0.46 -0.3
1,054,582 - MPMX19_01013 0.46 -0.0
1,054,582 - MPMX19_01013 0.46 -1.0
1,054,602 + MPMX19_01013 0.50 +0.6
1,054,729 - MPMX19_01013 0.75 -1.0
1,054,743 + MPMX19_01013 0.78 -0.7
1,054,743 + MPMX19_01013 0.78 -0.5
1,054,743 + MPMX19_01013 0.78 +0.3
1,054,743 + MPMX19_01013 0.78 -1.0
1,054,743 + MPMX19_01013 0.78 -1.6
1,054,743 + MPMX19_01013 0.78 -1.3
1,054,743 + MPMX19_01013 0.78 -0.5
1,054,744 - MPMX19_01013 0.78 -0.2
1,054,744 - MPMX19_01013 0.78 -1.1
1,054,981 + MPMX19_01014 0.15 -1.2
1,054,981 + MPMX19_01014 0.15 -1.3
1,054,981 + MPMX19_01014 0.15 -0.4
1,054,981 + MPMX19_01014 0.15 -2.2
1,054,981 + MPMX19_01014 0.15 -0.8
1,054,981 + MPMX19_01014 0.15 -1.7
1,054,982 - MPMX19_01014 0.15 -0.0
1,054,982 - MPMX19_01014 0.15 +0.7
1,054,982 - MPMX19_01014 0.15 -0.5
1,055,234 + MPMX19_01014 0.47 -0.9
1,055,234 + MPMX19_01014 0.47 -0.1
1,055,235 - MPMX19_01014 0.47 -2.0
1,055,235 - MPMX19_01014 0.47 -1.2
1,055,235 - MPMX19_01014 0.47 -1.2
1,055,273 - MPMX19_01014 0.51 -1.0
1,055,339 - MPMX19_01014 0.60 -0.0
1,055,339 - MPMX19_01014 0.60 -2.1
1,055,339 - MPMX19_01014 0.60 -2.6

Or see this region's nucleotide sequence