Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00816 and MPMX19_00817 are separated by 48 nucleotides MPMX19_00817 and MPMX19_00818 are separated by 5 nucleotides MPMX19_00818 and MPMX19_00819 are separated by 117 nucleotides MPMX19_00819 and MPMX19_00820 are separated by 70 nucleotides
MPMX19_00816: MPMX19_00816 - Alpha-2-macroglobulin, at 839,129 to 844,342
_00816
MPMX19_00817: MPMX19_00817 - Penicillin-binding protein 1C, at 844,391 to 846,430
_00817
MPMX19_00818: MPMX19_00818 - hypothetical protein, at 846,436 to 846,708
_00818
MPMX19_00819: MPMX19_00819 - hypothetical protein, at 846,826 to 847,212
_00819
MPMX19_00820: MPMX19_00820 - Multicopper oxidase MmcO, at 847,283 to 848,896
_00820
Position (kb) 844
845
846
847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 843.392 kb on + strand, within MPMX19_00816 at 843.392 kb on + strand, within MPMX19_00816 at 843.393 kb on - strand, within MPMX19_00816 at 843.393 kb on - strand, within MPMX19_00816 at 843.546 kb on - strand, within MPMX19_00816 at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.367 kb on - strand at 844.604 kb on + strand, within MPMX19_00817 at 844.604 kb on + strand, within MPMX19_00817 at 844.604 kb on + strand, within MPMX19_00817 at 844.604 kb on + strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.853 kb on + strand, within MPMX19_00817 at 844.854 kb on - strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.307 kb on - strand, within MPMX19_00817 at 845.307 kb on - strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.717 kb on + strand, within MPMX19_00817 at 845.718 kb on - strand, within MPMX19_00817 at 845.718 kb on - strand, within MPMX19_00817 at 845.921 kb on + strand, within MPMX19_00817 at 845.921 kb on + strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.963 kb on + strand, within MPMX19_00817 at 845.963 kb on + strand, within MPMX19_00817 at 845.963 kb on + strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.966 kb on + strand, within MPMX19_00817 at 845.966 kb on - strand, within MPMX19_00817 at 845.966 kb on - strand, within MPMX19_00817 at 846.017 kb on + strand, within MPMX19_00817 at 846.017 kb on + strand, within MPMX19_00817 at 846.018 kb on - strand, within MPMX19_00817 at 846.018 kb on - strand, within MPMX19_00817 at 846.018 kb on - strand, within MPMX19_00817 at 846.438 kb on - strand at 846.530 kb on + strand, within MPMX19_00818 at 846.530 kb on + strand, within MPMX19_00818 at 846.530 kb on + strand, within MPMX19_00818 at 846.530 kb on + strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.724 kb on + strand at 846.725 kb on - strand at 846.725 kb on - strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.783 kb on + strand at 846.783 kb on + strand at 846.784 kb on - strand at 846.784 kb on - strand at 846.790 kb on + strand at 846.791 kb on - strand at 846.791 kb on - strand at 846.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 843,392 + MPMX19_00816 0.82 -1.2 843,392 + MPMX19_00816 0.82 -0.3 843,393 - MPMX19_00816 0.82 -0.5 843,393 - MPMX19_00816 0.82 +0.6 843,546 - MPMX19_00816 0.85 -0.4 844,133 + +0.3 844,133 + +0.3 844,133 + +0.8 844,133 + -0.6 844,134 - +0.1 844,134 - -0.6 844,134 - +0.8 844,134 - -2.0 844,134 - -0.9 844,134 - -1.6 844,134 - -0.6 844,166 + -0.2 844,166 + -0.2 844,166 + +2.0 844,166 + -0.3 844,166 + -0.6 844,167 - -1.3 844,167 - +0.0 844,167 - +0.5 844,167 - +0.1 844,167 - -0.2 844,167 - -1.6 844,247 + -0.2 844,247 + -1.3 844,247 + -1.1 844,247 + -0.4 844,247 + -0.4 844,248 - +0.9 844,248 - +0.3 844,248 - -0.5 844,248 - +0.6 844,248 - -0.1 844,248 - -0.6 844,248 - +0.9 844,248 - +0.2 844,248 - +0.5 844,280 + -1.1 844,280 + -1.4 844,280 + -0.0 844,280 + +0.0 844,280 + +0.6 844,280 + +0.5 844,280 + +0.8 844,280 + -0.5 844,280 + -1.7 844,280 + -1.2 844,280 + +0.4 844,280 + -0.4 844,280 + +0.3 844,280 + +0.5 844,280 + -0.4 844,280 + -2.5 844,280 + +0.4 844,280 + +0.2 844,280 + +0.1 844,280 + +0.3 844,280 + +0.0 844,280 + -1.9 844,280 + -0.6 844,280 + +0.7 844,280 + -0.3 844,280 + -0.6 844,280 + +0.2 844,280 + -0.9 844,280 + -1.4 844,280 + -0.1 844,280 + -0.3 844,280 + -1.0 844,280 + +0.1 844,280 + -0.4 844,281 - +0.2 844,281 - +0.9 844,281 - -0.7 844,281 - +0.0 844,281 - -1.4 844,281 - +0.1 844,281 - -0.4 844,281 - -0.2 844,281 - +0.3 844,281 - +0.0 844,281 - -1.6 844,281 - +1.3 844,281 - +0.0 844,281 - -0.1 844,281 - -0.9 844,281 - -1.6 844,281 - -0.2 844,281 - +0.0 844,281 - -0.4 844,281 - +0.0 844,281 - +1.3 844,281 - +0.3 844,281 - -0.2 844,281 - +0.1 844,281 - -1.0 844,281 - -1.2 844,281 - -0.9 844,281 - +0.4 844,281 - -1.4 844,281 - +0.0 844,281 - -0.3 844,281 - +0.0 844,281 - -0.3 844,281 - -1.0 844,281 - +0.4 844,281 - +0.1 844,281 - -1.2 844,367 - +0.0 844,604 + MPMX19_00817 0.10 +0.3 844,604 + MPMX19_00817 0.10 +1.1 844,604 + MPMX19_00817 0.10 -0.5 844,604 + MPMX19_00817 0.10 +0.3 844,605 - MPMX19_00817 0.10 -2.0 844,605 - MPMX19_00817 0.10 -0.3 844,605 - MPMX19_00817 0.10 +0.7 844,605 - MPMX19_00817 0.10 +2.0 844,835 + MPMX19_00817 0.22 +0.6 844,835 + MPMX19_00817 0.22 -0.8 844,835 + MPMX19_00817 0.22 -1.2 844,835 + MPMX19_00817 0.22 +0.8 844,835 + MPMX19_00817 0.22 +0.2 844,835 + MPMX19_00817 0.22 +0.8 844,835 + MPMX19_00817 0.22 -0.9 844,835 + MPMX19_00817 0.22 -0.1 844,835 + MPMX19_00817 0.22 +1.7 844,836 - MPMX19_00817 0.22 +0.3 844,836 - MPMX19_00817 0.22 +0.0 844,836 - MPMX19_00817 0.22 +0.4 844,836 - MPMX19_00817 0.22 +0.0 844,836 - MPMX19_00817 0.22 -0.6 844,836 - MPMX19_00817 0.22 +0.0 844,836 - MPMX19_00817 0.22 +0.6 844,836 - MPMX19_00817 0.22 -0.2 844,836 - MPMX19_00817 0.22 -1.3 844,836 - MPMX19_00817 0.22 -0.3 844,853 + MPMX19_00817 0.23 +1.6 844,854 - MPMX19_00817 0.23 -0.6 845,306 + MPMX19_00817 0.45 +0.2 845,306 + MPMX19_00817 0.45 +0.9 845,306 + MPMX19_00817 0.45 +0.8 845,306 + MPMX19_00817 0.45 +1.3 845,306 + MPMX19_00817 0.45 -0.9 845,306 + MPMX19_00817 0.45 +0.4 845,306 + MPMX19_00817 0.45 -1.5 845,307 - MPMX19_00817 0.45 +1.1 845,307 - MPMX19_00817 0.45 +0.7 845,405 + MPMX19_00817 0.50 -0.6 845,405 + MPMX19_00817 0.50 +0.6 845,405 + MPMX19_00817 0.50 +1.1 845,405 + MPMX19_00817 0.50 -0.6 845,405 + MPMX19_00817 0.50 -0.4 845,405 + MPMX19_00817 0.50 -1.3 845,405 + MPMX19_00817 0.50 +0.7 845,405 + MPMX19_00817 0.50 -1.7 845,405 + MPMX19_00817 0.50 +0.3 845,405 + MPMX19_00817 0.50 +1.0 845,405 + MPMX19_00817 0.50 -1.4 845,405 + MPMX19_00817 0.50 -0.9 845,405 + MPMX19_00817 0.50 -2.6 845,406 - MPMX19_00817 0.50 +0.0 845,406 - MPMX19_00817 0.50 +1.0 845,406 - MPMX19_00817 0.50 +0.3 845,406 - MPMX19_00817 0.50 -0.8 845,406 - MPMX19_00817 0.50 +0.2 845,406 - MPMX19_00817 0.50 -1.2 845,406 - MPMX19_00817 0.50 -1.0 845,406 - MPMX19_00817 0.50 -1.9 845,406 - MPMX19_00817 0.50 -0.5 845,717 + MPMX19_00817 0.65 +1.2 845,718 - MPMX19_00817 0.65 +0.8 845,718 - MPMX19_00817 0.65 -0.6 845,921 + MPMX19_00817 0.75 +0.9 845,921 + MPMX19_00817 0.75 -1.0 845,922 - MPMX19_00817 0.75 -0.4 845,922 - MPMX19_00817 0.75 -1.4 845,922 - MPMX19_00817 0.75 -0.4 845,922 - MPMX19_00817 0.75 +1.3 845,922 - MPMX19_00817 0.75 +1.3 845,963 + MPMX19_00817 0.77 +0.4 845,963 + MPMX19_00817 0.77 -0.6 845,963 + MPMX19_00817 0.77 +0.3 845,964 - MPMX19_00817 0.77 +0.4 845,964 - MPMX19_00817 0.77 -0.2 845,964 - MPMX19_00817 0.77 -2.2 845,964 - MPMX19_00817 0.77 -1.8 845,964 - MPMX19_00817 0.77 -1.2 845,964 - MPMX19_00817 0.77 -0.2 845,964 - MPMX19_00817 0.77 -1.0 845,965 + MPMX19_00817 0.77 -1.0 845,965 + MPMX19_00817 0.77 -0.2 845,965 + MPMX19_00817 0.77 -0.6 845,965 + MPMX19_00817 0.77 -1.6 845,966 + MPMX19_00817 0.77 +0.2 845,966 - MPMX19_00817 0.77 +0.7 845,966 - MPMX19_00817 0.77 -0.1 846,017 + MPMX19_00817 0.80 -1.4 846,017 + MPMX19_00817 0.80 +1.6 846,018 - MPMX19_00817 0.80 -0.9 846,018 - MPMX19_00817 0.80 -0.2 846,018 - MPMX19_00817 0.80 -0.9 846,438 - -0.1 846,530 + MPMX19_00818 0.34 +0.6 846,530 + MPMX19_00818 0.34 +0.2 846,530 + MPMX19_00818 0.34 -0.4 846,530 + MPMX19_00818 0.34 -0.4 846,531 - MPMX19_00818 0.35 +0.5 846,531 - MPMX19_00818 0.35 -0.1 846,531 - MPMX19_00818 0.35 -0.8 846,531 - MPMX19_00818 0.35 -2.0 846,682 + -1.0 846,682 + -0.3 846,682 + +0.6 846,682 + -0.3 846,682 + -1.1 846,682 + +0.4 846,682 + -0.1 846,682 + -0.6 846,683 - +0.3 846,683 - +0.6 846,683 - -2.3 846,683 - -0.3 846,683 - -0.1 846,683 - +0.6 846,683 - +1.0 846,683 - -0.4 846,683 - +0.3 846,684 + -0.6 846,684 + +0.4 846,684 + -0.9 846,684 + -0.4 846,684 + -0.4 846,684 + -1.0 846,684 + -1.4 846,684 + +0.5 846,684 + +0.3 846,684 + -0.6 846,684 + +0.0 846,685 - -0.7 846,685 - +0.4 846,685 - +1.1 846,685 - -1.9 846,685 - +0.1 846,685 - +0.0 846,685 - -1.6 846,685 - -0.8 846,685 - -0.7 846,724 + +0.3 846,725 - +0.1 846,725 - -1.3 846,738 + +0.4 846,738 + +0.8 846,738 + +0.1 846,738 + -0.3 846,738 + +0.0 846,738 + -0.5 846,738 + +0.0 846,739 - +1.2 846,739 - -0.7 846,739 - -0.2 846,739 - -1.8 846,739 - +1.6 846,739 - -0.7 846,739 - +0.9 846,739 - -1.7 846,739 - -0.6 846,739 - -0.7 846,739 - -0.1 846,739 - -1.2 846,739 - -1.9 846,739 - +2.1 846,783 + +1.0 846,783 + +0.1 846,784 - -1.1 846,784 - +0.1 846,790 + -0.7 846,791 - -0.3 846,791 - +0.9 846,791 - -1.0
Or see this region's nucleotide sequence