Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00298 and MPMX19_00299 are separated by 88 nucleotides MPMX19_00299 and MPMX19_00300 are separated by 577 nucleotides MPMX19_00300 and MPMX19_00301 are separated by 235 nucleotides
MPMX19_00298: MPMX19_00298 - hypothetical protein, at 297,877 to 298,935
_00298
MPMX19_00299: MPMX19_00299 - hypothetical protein, at 299,024 to 300,079
_00299
MPMX19_00300: MPMX19_00300 - 50S ribosomal protein L36, at 300,657 to 300,782
_00300
MPMX19_00301: MPMX19_00301 - putative FAD-linked oxidoreductase, at 301,018 to 302,505
_00301
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 298.045 kb on + strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.079 kb on - strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.234 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.324 kb on + strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.325 kb on - strand, within MPMX19_00298 at 298.831 kb on + strand at 298.831 kb on + strand at 298.831 kb on + strand at 298.831 kb on + strand at 298.831 kb on + strand at 298.831 kb on + strand at 298.831 kb on + strand at 298.831 kb on + strand at 298.832 kb on - strand at 298.832 kb on - strand at 298.832 kb on - strand at 298.832 kb on - strand at 298.832 kb on - strand at 298.832 kb on - strand at 298.832 kb on - strand at 298.864 kb on + strand at 298.864 kb on + strand at 298.864 kb on + strand at 298.864 kb on + strand at 298.865 kb on - strand at 298.865 kb on - strand at 298.865 kb on - strand at 299.000 kb on - strand at 299.000 kb on - strand at 299.000 kb on - strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.025 kb on + strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.026 kb on - strand at 299.094 kb on + strand at 299.094 kb on + strand at 299.094 kb on + strand at 299.094 kb on + strand at 299.095 kb on - strand at 299.095 kb on - strand at 299.095 kb on - strand at 299.095 kb on - strand at 299.095 kb on - strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.127 kb on + strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.128 kb on - strand at 299.233 kb on + strand, within MPMX19_00299 at 299.233 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.355 kb on + strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.356 kb on - strand, within MPMX19_00299 at 299.634 kb on + strand, within MPMX19_00299 at 299.634 kb on + strand, within MPMX19_00299 at 299.634 kb on + strand, within MPMX19_00299 at 299.634 kb on + strand, within MPMX19_00299 at 299.634 kb on + strand, within MPMX19_00299 at 299.635 kb on - strand, within MPMX19_00299 at 299.635 kb on - strand, within MPMX19_00299 at 299.635 kb on - strand, within MPMX19_00299 at 299.635 kb on - strand, within MPMX19_00299 at 299.635 kb on - strand, within MPMX19_00299 at 299.635 kb on - strand, within MPMX19_00299 at 299.661 kb on + strand, within MPMX19_00299 at 299.662 kb on - strand, within MPMX19_00299 at 299.725 kb on - strand, within MPMX19_00299 at 299.725 kb on - strand, within MPMX19_00299 at 299.725 kb on - strand, within MPMX19_00299 at 299.725 kb on - strand, within MPMX19_00299 at 299.725 kb on - strand, within MPMX19_00299 at 299.725 kb on - strand, within MPMX19_00299 at 299.913 kb on + strand, within MPMX19_00299 at 300.111 kb on + strand at 300.112 kb on - strand at 300.112 kb on - strand at 300.136 kb on + strand at 300.162 kb on + strand at 300.269 kb on - strand at 300.272 kb on + strand at 300.272 kb on + strand at 300.273 kb on - strand at 300.273 kb on - strand at 300.273 kb on - strand at 300.284 kb on - strand at 300.284 kb on - strand at 300.284 kb on - strand at 300.403 kb on - strand at 300.405 kb on - strand at 300.448 kb on - strand at 300.465 kb on + strand at 300.466 kb on - strand at 300.953 kb on + strand at 300.953 kb on + strand at 300.953 kb on + strand at 300.953 kb on + strand at 300.953 kb on + strand at 300.953 kb on + strand at 300.954 kb on - strand at 300.954 kb on - strand at 300.971 kb on + strand at 300.971 kb on + strand at 300.971 kb on + strand at 300.971 kb on + strand at 300.971 kb on + strand at 300.972 kb on - strand at 300.972 kb on - strand at 300.972 kb on - strand at 300.972 kb on - strand at 301.003 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 298,045 + MPMX19_00298 0.16 +0.8 298,079 - MPMX19_00298 0.19 +1.5 298,079 - MPMX19_00298 0.19 -0.6 298,079 - MPMX19_00298 0.19 -0.9 298,234 + MPMX19_00298 0.34 -0.3 298,234 + MPMX19_00298 0.34 +0.7 298,234 + MPMX19_00298 0.34 -1.3 298,234 + MPMX19_00298 0.34 -1.1 298,234 + MPMX19_00298 0.34 +1.0 298,234 + MPMX19_00298 0.34 +0.4 298,234 + MPMX19_00298 0.34 -0.9 298,324 + MPMX19_00298 0.42 -0.1 298,324 + MPMX19_00298 0.42 +1.3 298,324 + MPMX19_00298 0.42 -0.9 298,324 + MPMX19_00298 0.42 +0.0 298,324 + MPMX19_00298 0.42 -2.4 298,324 + MPMX19_00298 0.42 -0.6 298,325 - MPMX19_00298 0.42 -1.3 298,325 - MPMX19_00298 0.42 -0.7 298,325 - MPMX19_00298 0.42 -0.6 298,325 - MPMX19_00298 0.42 -0.6 298,325 - MPMX19_00298 0.42 -1.3 298,325 - MPMX19_00298 0.42 -0.6 298,325 - MPMX19_00298 0.42 +1.0 298,325 - MPMX19_00298 0.42 -0.5 298,325 - MPMX19_00298 0.42 -0.7 298,325 - MPMX19_00298 0.42 -0.1 298,831 + -1.6 298,831 + -0.5 298,831 + +1.4 298,831 + -2.7 298,831 + +1.0 298,831 + -0.7 298,831 + -2.7 298,831 + -1.1 298,832 - -2.0 298,832 - -0.1 298,832 - -0.0 298,832 - -1.1 298,832 - -0.9 298,832 - +0.1 298,832 - -0.4 298,864 + +0.4 298,864 + -2.2 298,864 + -0.2 298,864 + -0.6 298,865 - -0.0 298,865 - -0.9 298,865 - +0.5 299,000 - -0.5 299,000 - -1.4 299,000 - +0.1 299,025 + -0.2 299,025 + +0.6 299,025 + +2.0 299,025 + +0.7 299,025 + -1.0 299,025 + -0.3 299,025 + -0.4 299,025 + -2.1 299,025 + +0.4 299,025 + -0.7 299,025 + -0.9 299,025 + -1.0 299,025 + -2.3 299,026 - -0.7 299,026 - -1.1 299,026 - -1.0 299,026 - +0.1 299,026 - -0.0 299,026 - -0.2 299,026 - -0.4 299,026 - -0.6 299,026 - +0.0 299,026 - -2.8 299,026 - -0.6 299,026 - +1.7 299,026 - -0.6 299,026 - -2.0 299,026 - -0.2 299,094 + -0.1 299,094 + -0.4 299,094 + -1.3 299,094 + -1.6 299,095 - -0.1 299,095 - -0.7 299,095 - -1.1 299,095 - -1.3 299,095 - -0.5 299,127 + +0.1 299,127 + +0.1 299,127 + -0.0 299,127 + +0.6 299,127 + -0.0 299,127 + -1.1 299,127 + +0.9 299,127 + -0.4 299,127 + -0.7 299,128 - -0.9 299,128 - +0.1 299,128 - -0.7 299,128 - +0.0 299,128 - -0.5 299,128 - -0.1 299,128 - -1.7 299,128 - -0.5 299,128 - +0.5 299,233 + MPMX19_00299 0.20 -1.7 299,233 + MPMX19_00299 0.20 -0.6 299,355 + MPMX19_00299 0.31 -2.8 299,355 + MPMX19_00299 0.31 +0.2 299,355 + MPMX19_00299 0.31 -0.2 299,355 + MPMX19_00299 0.31 +0.3 299,355 + MPMX19_00299 0.31 -1.4 299,355 + MPMX19_00299 0.31 -1.4 299,355 + MPMX19_00299 0.31 -1.4 299,355 + MPMX19_00299 0.31 +0.3 299,355 + MPMX19_00299 0.31 -0.4 299,355 + MPMX19_00299 0.31 -0.4 299,355 + MPMX19_00299 0.31 -0.7 299,355 + MPMX19_00299 0.31 -0.2 299,355 + MPMX19_00299 0.31 -0.3 299,355 + MPMX19_00299 0.31 +0.1 299,355 + MPMX19_00299 0.31 -2.0 299,355 + MPMX19_00299 0.31 -1.7 299,355 + MPMX19_00299 0.31 +0.7 299,355 + MPMX19_00299 0.31 +0.9 299,355 + MPMX19_00299 0.31 -2.0 299,355 + MPMX19_00299 0.31 -1.7 299,355 + MPMX19_00299 0.31 +0.6 299,355 + MPMX19_00299 0.31 +1.3 299,355 + MPMX19_00299 0.31 +0.4 299,356 - MPMX19_00299 0.31 +0.1 299,356 - MPMX19_00299 0.31 -1.3 299,356 - MPMX19_00299 0.31 -1.0 299,356 - MPMX19_00299 0.31 +0.5 299,356 - MPMX19_00299 0.31 -0.4 299,356 - MPMX19_00299 0.31 -0.2 299,356 - MPMX19_00299 0.31 -0.6 299,356 - MPMX19_00299 0.31 +0.4 299,356 - MPMX19_00299 0.31 -1.4 299,356 - MPMX19_00299 0.31 -0.8 299,356 - MPMX19_00299 0.31 -0.2 299,356 - MPMX19_00299 0.31 -1.3 299,356 - MPMX19_00299 0.31 -0.4 299,634 + MPMX19_00299 0.58 +1.0 299,634 + MPMX19_00299 0.58 +0.3 299,634 + MPMX19_00299 0.58 -0.6 299,634 + MPMX19_00299 0.58 +0.7 299,634 + MPMX19_00299 0.58 +0.4 299,635 - MPMX19_00299 0.58 -0.7 299,635 - MPMX19_00299 0.58 -0.2 299,635 - MPMX19_00299 0.58 -1.4 299,635 - MPMX19_00299 0.58 -1.2 299,635 - MPMX19_00299 0.58 -0.9 299,635 - MPMX19_00299 0.58 +0.7 299,661 + MPMX19_00299 0.60 -1.7 299,662 - MPMX19_00299 0.60 -0.9 299,725 - MPMX19_00299 0.66 -0.2 299,725 - MPMX19_00299 0.66 -1.1 299,725 - MPMX19_00299 0.66 -0.6 299,725 - MPMX19_00299 0.66 -0.7 299,725 - MPMX19_00299 0.66 +0.1 299,725 - MPMX19_00299 0.66 -0.7 299,913 + MPMX19_00299 0.84 -2.2 300,111 + -0.9 300,112 - +0.7 300,112 - +0.7 300,136 + +0.3 300,162 + +0.3 300,269 - -2.4 300,272 + -2.1 300,272 + +0.7 300,273 - +1.7 300,273 - -0.0 300,273 - -0.6 300,284 - -1.2 300,284 - +0.7 300,284 - -0.6 300,403 - +1.7 300,405 - -0.1 300,448 - -0.2 300,465 + -2.0 300,466 - -0.5 300,953 + -2.4 300,953 + -0.8 300,953 + +1.7 300,953 + +0.8 300,953 + +1.2 300,953 + -1.1 300,954 - +0.7 300,954 - -0.3 300,971 + -1.3 300,971 + -1.9 300,971 + -0.2 300,971 + -0.5 300,971 + -1.4 300,972 - +0.1 300,972 - -0.3 300,972 - +0.7 300,972 - -0.3 301,003 + -1.4
Or see this region's nucleotide sequence