Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_08575

Experiment: Time0_primer_test

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_primer_test
1,791,627	+		HUW76_08565	0.82	+1.4
1,791,635	-		HUW76_08565	0.84	-0.4
1,791,635	-		HUW76_08565	0.84	-0.5
1,791,752	+				+0.4
1,791,752	+				+0.5
1,791,752	+				+0.7
1,791,812	+		HUW76_08570	0.18	+0.4
1,791,815	-		HUW76_08570	0.18	+0.5
1,791,821	-		HUW76_08570	0.19	+0.1
1,791,821	-		HUW76_08570	0.19	-0.2
1,791,821	-		HUW76_08570	0.19	-0.2
1,791,830	+		HUW76_08570	0.21	-0.1
1,791,830	+		HUW76_08570	0.21	+2.0
1,791,835	+		HUW76_08570	0.22	+0.3
1,791,838	-		HUW76_08570	0.22	+0.4
1,791,848	-		HUW76_08570	0.24	+0.4
1,791,854	-		HUW76_08570	0.25	-0.1
1,791,854	-		HUW76_08570	0.25	-0.2
1,791,867	+		HUW76_08570	0.27	+1.8
1,791,867	+		HUW76_08570	0.27	-0.3
1,791,867	+		HUW76_08570	0.27	-0.1
1,791,867	+		HUW76_08570	0.27	+0.6
1,791,867	+		HUW76_08570	0.27	+0.0
1,791,868	+		HUW76_08570	0.27	+0.8
1,791,870	-		HUW76_08570	0.27	-0.9
1,791,870	-		HUW76_08570	0.27	-1.1
1,791,875	-		HUW76_08570	0.28	-0.3
1,791,875	-		HUW76_08570	0.28	-0.4
1,791,875	-		HUW76_08570	0.28	+0.5
1,791,875	-		HUW76_08570	0.28	+0.0
1,791,875	-		HUW76_08570	0.28	+0.3
1,791,875	-		HUW76_08570	0.28	+0.1
1,791,876	-		HUW76_08570	0.28	-0.2
1,791,884	-		HUW76_08570	0.29	-0.3
1,791,910	+		HUW76_08570	0.33	+0.8
1,791,918	-		HUW76_08570	0.35	-0.4
1,791,930	+		HUW76_08570	0.37	+0.6
1,791,985	+		HUW76_08570	0.45	+0.5
1,792,033	+		HUW76_08570	0.53	+1.4
1,792,033	+		HUW76_08570	0.53	-0.2
1,792,041	+		HUW76_08570	0.54	+0.2
1,792,042	-		HUW76_08570	0.54	-0.4
1,792,042	-		HUW76_08570	0.54	+0.0
1,792,044	+		HUW76_08570	0.55	+1.7
1,792,044	+		HUW76_08570	0.55	+1.2
1,792,044	+		HUW76_08570	0.55	+0.4
1,792,170	+		HUW76_08570	0.75	-0.2
1,792,170	+		HUW76_08570	0.75	+0.2
1,792,222	+		HUW76_08570	0.83	+0.2
1,792,223	+		HUW76_08570	0.83	-0.9
1,792,223	+		HUW76_08570	0.83	-0.2
1,792,231	-		HUW76_08570	0.84	-0.1
1,792,231	-		HUW76_08570	0.84	-0.3
1,792,231	-		HUW76_08570	0.84	+0.9
1,792,231	-		HUW76_08570	0.84	+0.0
1,792,240	+		HUW76_08570	0.86	+0.0
1,792,240	+		HUW76_08570	0.86	-0.4
1,792,248	-		HUW76_08570	0.87	+0.3
1,792,257	-		HUW76_08570	0.88	+0.6
1,792,257	-		HUW76_08570	0.88	-0.2
1,792,260	+		HUW76_08570	0.89	+1.9
1,792,260	+		HUW76_08570	0.89	+0.1
1,792,260	+		HUW76_08570	0.89	-0.3
1,792,267	-				-1.5
1,792,267	-				+0.4
1,792,268	-				-0.0
1,792,274	+				+0.4
1,792,274	+				+0.1
1,792,280	+				-0.4
1,792,296	-				-0.6
1,792,296	-				+0.1
1,792,540	-				-0.4
1,792,547	-				-0.5
1,792,708	-		HUW76_08575	0.16	+0.1
1,792,708	-		HUW76_08575	0.16	+0.0
1,792,776	+		HUW76_08575	0.23	+0.7
1,792,776	+		HUW76_08575	0.23	+1.9
1,792,784	+		HUW76_08575	0.24	+1.4
1,792,801	+		HUW76_08575	0.26	+1.1
1,792,809	-		HUW76_08575	0.27	+0.8
1,792,809	-		HUW76_08575	0.27	-0.4
1,792,814	-		HUW76_08575	0.27	+0.0
1,792,850	+		HUW76_08575	0.31	+1.4
1,792,850	+		HUW76_08575	0.31	+0.7
1,792,850	+		HUW76_08575	0.31	+0.3
1,792,858	-		HUW76_08575	0.32	+0.0
1,792,858	-		HUW76_08575	0.32	-0.4
1,792,868	+		HUW76_08575	0.33	-0.5
1,792,868	+		HUW76_08575	0.33	+0.8
1,793,027	-		HUW76_08575	0.49	-1.3
1,793,082	+		HUW76_08575	0.54	+1.8
1,793,092	+		HUW76_08575	0.55	+2.7
1,793,092	+		HUW76_08575	0.55	+1.5
1,793,100	-		HUW76_08575	0.56	+0.6
1,793,100	-		HUW76_08575	0.56	+0.1
1,793,100	-		HUW76_08575	0.56	-0.4
1,793,100	-		HUW76_08575	0.56	-0.0
1,793,100	-		HUW76_08575	0.56	+0.1
1,793,100	-		HUW76_08575	0.56	+1.0
1,793,115	+		HUW76_08575	0.58	+1.8
1,793,115	+		HUW76_08575	0.58	-0.4
1,793,121	-		HUW76_08575	0.58	-0.4
1,793,123	-		HUW76_08575	0.58	-0.2
1,793,123	-		HUW76_08575	0.58	+0.2
1,793,167	+		HUW76_08575	0.63	+1.5
1,793,175	-		HUW76_08575	0.64	+1.7
1,793,175	-		HUW76_08575	0.64	-1.0
1,793,175	-		HUW76_08575	0.64	+0.7
1,793,175	-		HUW76_08575	0.64	-0.3
1,793,185	-		HUW76_08575	0.65	+0.4
1,793,185	-		HUW76_08575	0.65	-2.1
1,793,195	+		HUW76_08575	0.66	+2.5
1,793,195	+		HUW76_08575	0.66	+1.4
1,793,195	+		HUW76_08575	0.66	+1.4
1,793,203	-		HUW76_08575	0.67	+0.3
1,793,203	-		HUW76_08575	0.67	+0.4
1,793,223	-		HUW76_08575	0.69	+0.4
1,793,236	-		HUW76_08575	0.70	-0.6
1,793,247	+		HUW76_08575	0.71	+0.9
1,793,247	+		HUW76_08575	0.71	+2.9
1,793,255	-		HUW76_08575	0.72	-0.3
1,793,255	-		HUW76_08575	0.72	-0.4
1,793,296	-		HUW76_08575	0.76	+0.8
1,793,296	-		HUW76_08575	0.76	-0.5
1,793,464	-				-0.1
1,793,464	-				-0.3
1,793,464	-				+0.8
1,793,464	-				+0.3
1,793,481	-				+1.1
1,793,481	-				+0.2
1,793,532	-				+0.1
1,793,532	-				-2.0
1,793,655	+		HUW76_08580	0.19	-0.6
1,793,655	+		HUW76_08580	0.19	+0.7
1,793,655	+		HUW76_08580	0.19	+3.2
1,793,662	+		HUW76_08580	0.20	+0.3
1,793,663	-		HUW76_08580	0.20	+0.3
1,793,663	-		HUW76_08580	0.20	-0.5
1,793,663	-		HUW76_08580	0.20	-0.1
1,793,663	-		HUW76_08580	0.20	-0.2
1,793,663	-		HUW76_08580	0.20	+0.3
1,793,664	-		HUW76_08580	0.20	-0.0
1,793,670	-		HUW76_08580	0.22	-0.0
1,793,753	-		HUW76_08580	0.39	+0.1
1,793,753	-		HUW76_08580	0.39	+0.9
1,793,754	+		HUW76_08580	0.39	+0.4
1,793,767	-		HUW76_08580	0.42	-0.1
1,793,865	+		HUW76_08580	0.62	+2.8
1,793,918	-		HUW76_08580	0.72	+0.5
1,793,918	-		HUW76_08580	0.72	-0.1
1,793,938	-		HUW76_08580	0.76	-0.4
1,793,938	-		HUW76_08580	0.76	+0.0
1,793,940	-		HUW76_08580	0.77	-0.4
1,793,940	-		HUW76_08580	0.77	-0.3
1,793,947	+		HUW76_08580	0.78	+2.5
1,794,036	-				+0.2
1,794,059	-				-0.1
1,794,059	-				-0.7
1,794,105	+				+0.3
1,794,105	+				+1.9
1,794,113	-				-0.6
1,794,113	-				-0.2
1,794,113	-				-0.0
1,794,113	-				+0.2
1,794,113	-				-0.2
1,794,113	-				-0.0
1,794,115	+				+0.6
1,794,137	+				+0.7
1,794,137	+				+1.7
1,794,145	-		HUW76_08585	0.10	+0.4
1,794,145	-		HUW76_08585	0.10	-0.6
1,794,145	-		HUW76_08585	0.10	-0.3
1,794,206	-		HUW76_08585	0.18	-0.6
1,794,206	-		HUW76_08585	0.18	-0.4
1,794,226	-		HUW76_08585	0.20	+0.9
1,794,226	-		HUW76_08585	0.20	+0.2
1,794,226	-		HUW76_08585	0.20	+0.5
1,794,226	-		HUW76_08585	0.20	+0.6
1,794,227	-		HUW76_08585	0.20	+0.4
1,794,227	-		HUW76_08585	0.20	-0.6
1,794,280	+		HUW76_08585	0.27	+2.4
1,794,280	+		HUW76_08585	0.27	+3.5
1,794,280	+		HUW76_08585	0.27	+0.3
1,794,280	+		HUW76_08585	0.27	+3.2
1,794,288	-		HUW76_08585	0.28	+1.0
1,794,288	-		HUW76_08585	0.28	-0.8
1,794,288	-		HUW76_08585	0.28	+0.2
1,794,288	-		HUW76_08585	0.28	-0.2
1,794,288	-		HUW76_08585	0.28	+0.0
1,794,288	-		HUW76_08585	0.28	+0.3
1,794,288	-		HUW76_08585	0.28	+2.4
1,794,288	-		HUW76_08585	0.28	-0.3
1,794,288	-		HUW76_08585	0.28	+0.3
1,794,288	-		HUW76_08585	0.28	+0.1
1,794,288	-		HUW76_08585	0.28	-0.4
1,794,288	-		HUW76_08585	0.28	+1.6
1,794,312	-		HUW76_08585	0.31	-0.8
1,794,312	-		HUW76_08585	0.31	-0.1
1,794,486	+		HUW76_08585	0.53	+1.1
1,794,486	+		HUW76_08585	0.53	+2.9
1,794,486	+		HUW76_08585	0.53	+0.8
1,794,511	-		HUW76_08585	0.56	-0.6
1,794,519	-		HUW76_08585	0.57	+0.3
1,794,519	-		HUW76_08585	0.57	-0.1