Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03710

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03700 and HUW76_03705 are separated by 1 nucleotidesHUW76_03705 and HUW76_03710 are separated by 2 nucleotidesHUW76_03710 and HUW76_03715 are separated by 272 nucleotides HUW76_03700: HUW76_03700 - phosphatidate cytidylyltransferase, at 738,423 to 739,226 _03700 HUW76_03705: HUW76_03705 - CDP-alcohol phosphatidyltransferase family protein, at 739,228 to 739,827 _03705 HUW76_03710: HUW76_03710 - alpha/beta fold hydrolase, at 739,830 to 741,530 _03710 HUW76_03715: HUW76_03715 - cupin domain-containing protein, at 741,803 to 742,471 _03715 Position (kb) 739 740 741 742Strain fitness (log2 ratio) -2 -1 0 1 2 3at 738.881 kb on + strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.889 kb on - strand, within HUW76_03700at 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.258 kb on + strandat 739.266 kb on - strandat 739.266 kb on - strandat 739.381 kb on + strand, within HUW76_03705at 739.413 kb on + strand, within HUW76_03705at 739.428 kb on + strand, within HUW76_03705at 739.428 kb on + strand, within HUW76_03705at 739.436 kb on - strand, within HUW76_03705at 739.456 kb on - strand, within HUW76_03705at 739.477 kb on - strand, within HUW76_03705at 739.477 kb on - strand, within HUW76_03705at 739.601 kb on - strand, within HUW76_03705at 739.721 kb on - strand, within HUW76_03705at 739.721 kb on - strand, within HUW76_03705at 739.828 kb on + strandat 739.833 kb on + strandat 739.878 kb on - strandat 739.878 kb on - strandat 739.951 kb on + strandat 739.951 kb on + strandat 739.965 kb on - strandat 739.965 kb on - strandat 740.000 kb on + strand, within HUW76_03710at 740.019 kb on + strand, within HUW76_03710at 740.019 kb on + strand, within HUW76_03710at 740.027 kb on - strand, within HUW76_03710at 740.027 kb on - strand, within HUW76_03710at 740.027 kb on - strand, within HUW76_03710at 740.031 kb on + strand, within HUW76_03710at 740.031 kb on + strand, within HUW76_03710at 740.039 kb on - strand, within HUW76_03710at 740.039 kb on - strand, within HUW76_03710at 740.130 kb on - strand, within HUW76_03710at 740.130 kb on - strand, within HUW76_03710at 740.137 kb on + strand, within HUW76_03710at 740.144 kb on - strand, within HUW76_03710at 740.145 kb on - strand, within HUW76_03710at 740.145 kb on - strand, within HUW76_03710at 740.286 kb on - strand, within HUW76_03710at 740.286 kb on - strand, within HUW76_03710at 740.389 kb on + strand, within HUW76_03710at 740.405 kb on - strand, within HUW76_03710at 740.405 kb on - strand, within HUW76_03710at 740.447 kb on + strand, within HUW76_03710at 740.455 kb on - strand, within HUW76_03710at 740.553 kb on + strand, within HUW76_03710at 740.553 kb on + strand, within HUW76_03710at 740.560 kb on - strand, within HUW76_03710at 740.562 kb on - strand, within HUW76_03710at 740.562 kb on - strand, within HUW76_03710at 740.573 kb on + strand, within HUW76_03710at 740.650 kb on - strand, within HUW76_03710at 740.652 kb on + strand, within HUW76_03710at 740.652 kb on + strand, within HUW76_03710at 740.652 kb on - strand, within HUW76_03710at 740.652 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710at 740.694 kb on - strand, within HUW76_03710at 740.898 kb on + strand, within HUW76_03710at 740.906 kb on - strand, within HUW76_03710at 741.014 kb on + strand, within HUW76_03710at 741.039 kb on - strand, within HUW76_03710at 741.039 kb on - strand, within HUW76_03710at 741.054 kb on + strand, within HUW76_03710at 741.054 kb on + strand, within HUW76_03710at 741.054 kb on + strand, within HUW76_03710at 741.054 kb on + strand, within HUW76_03710at 741.054 kb on + strand, within HUW76_03710at 741.054 kb on + strand, within HUW76_03710at 741.054 kb on + strand, within HUW76_03710at 741.055 kb on + strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.062 kb on - strand, within HUW76_03710at 741.063 kb on - strand, within HUW76_03710at 741.063 kb on - strand, within HUW76_03710at 741.063 kb on - strand, within HUW76_03710at 741.063 kb on - strand, within HUW76_03710at 741.126 kb on - strand, within HUW76_03710at 741.142 kb on + strand, within HUW76_03710at 741.176 kb on - strand, within HUW76_03710at 741.198 kb on + strand, within HUW76_03710at 741.198 kb on + strand, within HUW76_03710at 741.198 kb on + strand, within HUW76_03710at 741.198 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.200 kb on + strand, within HUW76_03710at 741.206 kb on - strand, within HUW76_03710at 741.208 kb on - strand, within HUW76_03710at 741.208 kb on - strand, within HUW76_03710at 741.208 kb on - strand, within HUW76_03710at 741.208 kb on - strand, within HUW76_03710at 741.208 kb on - strand, within HUW76_03710at 741.208 kb on - strand, within HUW76_03710at 741.208 kb on - strand, within HUW76_03710at 741.214 kb on + strand, within HUW76_03710at 741.293 kb on + strand, within HUW76_03710at 741.293 kb on + strand, within HUW76_03710at 741.293 kb on - strand, within HUW76_03710at 741.293 kb on - strand, within HUW76_03710at 741.347 kb on - strand, within HUW76_03710at 741.347 kb on - strand, within HUW76_03710at 741.355 kb on - strand, within HUW76_03710at 741.355 kb on - strand, within HUW76_03710at 741.403 kb on - strandat 741.422 kb on + strandat 741.422 kb on + strandat 741.619 kb on - strandat 741.685 kb on + strandat 741.685 kb on + strandat 741.693 kb on - strandat 741.718 kb on - strandat 741.718 kb on - strandat 741.792 kb on + strandat 741.792 kb on + strandat 741.797 kb on + strandat 741.814 kb on + strandat 741.814 kb on + strandat 741.877 kb on - strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.923 kb on + strand, within HUW76_03715at 741.931 kb on - strand, within HUW76_03715at 741.931 kb on - strand, within HUW76_03715at 741.938 kb on + strand, within HUW76_03715at 741.944 kb on - strand, within HUW76_03715at 741.946 kb on - strand, within HUW76_03715at 741.946 kb on - strand, within HUW76_03715at 741.962 kb on + strand, within HUW76_03715at 741.962 kb on + strand, within HUW76_03715at 741.970 kb on - strand, within HUW76_03715at 741.970 kb on - strand, within HUW76_03715at 741.977 kb on - strand, within HUW76_03715at 741.978 kb on - strand, within HUW76_03715at 741.978 kb on - strand, within HUW76_03715at 741.979 kb on + strand, within HUW76_03715at 741.979 kb on + strand, within HUW76_03715at 741.987 kb on - strand, within HUW76_03715at 741.988 kb on - strand, within HUW76_03715at 742.014 kb on - strand, within HUW76_03715at 742.146 kb on + strand, within HUW76_03715at 742.146 kb on + strand, within HUW76_03715at 742.222 kb on - strand, within HUW76_03715at 742.222 kb on - strand, within HUW76_03715at 742.284 kb on - strand, within HUW76_03715at 742.285 kb on + strand, within HUW76_03715at 742.285 kb on + strand, within HUW76_03715at 742.293 kb on - strand, within HUW76_03715at 742.301 kb on - strand, within HUW76_03715at 742.301 kb on - strand, within HUW76_03715at 742.318 kb on - strand, within HUW76_03715at 742.358 kb on - strand, within HUW76_03715at 742.379 kb on - strand, within HUW76_03715at 742.379 kb on - strand, within HUW76_03715at 742.421 kb on + strandat 742.438 kb on + strandat 742.438 kb on + strandat 742.440 kb on + strandat 742.446 kb on - strandat 742.446 kb on - strandat 742.446 kb on - strandat 742.446 kb on - strandat 742.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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738,881 + HUW76_03700 0.57 +1.1
738,881 + HUW76_03700 0.57 -0.9
738,881 + HUW76_03700 0.57 -0.2
738,889 - HUW76_03700 0.58 -0.5
739,258 + +2.0
739,258 + +1.0
739,258 + +0.9
739,258 + -0.2
739,258 + -0.6
739,258 + -0.5
739,266 - -0.2
739,266 - -0.5
739,381 + HUW76_03705 0.26 -0.8
739,413 + HUW76_03705 0.31 +0.6
739,428 + HUW76_03705 0.33 +0.5
739,428 + HUW76_03705 0.33 -0.1
739,436 - HUW76_03705 0.35 -0.2
739,456 - HUW76_03705 0.38 -1.4
739,477 - HUW76_03705 0.41 +0.0
739,477 - HUW76_03705 0.41 -0.7
739,601 - HUW76_03705 0.62 -0.8
739,721 - HUW76_03705 0.82 +0.4
739,721 - HUW76_03705 0.82 -0.3
739,828 + -0.1
739,833 + -0.7
739,878 - -0.8
739,878 - -0.5
739,951 + -0.6
739,951 + +0.1
739,965 - +0.3
739,965 - -0.3
740,000 + HUW76_03710 0.10 -0.3
740,019 + HUW76_03710 0.11 -0.7
740,019 + HUW76_03710 0.11 +0.7
740,027 - HUW76_03710 0.12 +0.9
740,027 - HUW76_03710 0.12 -0.9
740,027 - HUW76_03710 0.12 +0.5
740,031 + HUW76_03710 0.12 +0.0
740,031 + HUW76_03710 0.12 +0.9
740,039 - HUW76_03710 0.12 +1.7
740,039 - HUW76_03710 0.12 +1.2
740,130 - HUW76_03710 0.18 -0.9
740,130 - HUW76_03710 0.18 -0.3
740,137 + HUW76_03710 0.18 +1.1
740,144 - HUW76_03710 0.18 -0.3
740,145 - HUW76_03710 0.19 -0.4
740,145 - HUW76_03710 0.19 -0.4
740,286 - HUW76_03710 0.27 -0.7
740,286 - HUW76_03710 0.27 -0.3
740,389 + HUW76_03710 0.33 +0.2
740,405 - HUW76_03710 0.34 -0.6
740,405 - HUW76_03710 0.34 +1.6
740,447 + HUW76_03710 0.36 -0.3
740,455 - HUW76_03710 0.37 -0.2
740,553 + HUW76_03710 0.43 +0.4
740,553 + HUW76_03710 0.43 +0.1
740,560 - HUW76_03710 0.43 -0.4
740,562 - HUW76_03710 0.43 +1.4
740,562 - HUW76_03710 0.43 -0.1
740,573 + HUW76_03710 0.44 +0.5
740,650 - HUW76_03710 0.48 +0.0
740,652 + HUW76_03710 0.48 -0.4
740,652 + HUW76_03710 0.48 +0.2
740,652 - HUW76_03710 0.48 -0.3
740,652 - HUW76_03710 0.48 +0.2
740,694 - HUW76_03710 0.51 +0.4
740,694 - HUW76_03710 0.51 +0.0
740,694 - HUW76_03710 0.51 -1.0
740,694 - HUW76_03710 0.51 -0.4
740,898 + HUW76_03710 0.63 -0.8
740,906 - HUW76_03710 0.63 +0.1
741,014 + HUW76_03710 0.70 -0.2
741,039 - HUW76_03710 0.71 -0.6
741,039 - HUW76_03710 0.71 +0.5
741,054 + HUW76_03710 0.72 +1.2
741,054 + HUW76_03710 0.72 +0.2
741,054 + HUW76_03710 0.72 -0.3
741,054 + HUW76_03710 0.72 +0.0
741,054 + HUW76_03710 0.72 +0.1
741,054 + HUW76_03710 0.72 -1.1
741,054 + HUW76_03710 0.72 +0.6
741,055 + HUW76_03710 0.72 +0.5
741,062 - HUW76_03710 0.72 -2.0
741,062 - HUW76_03710 0.72 +0.3
741,062 - HUW76_03710 0.72 +0.4
741,062 - HUW76_03710 0.72 -0.5
741,062 - HUW76_03710 0.72 +0.5
741,062 - HUW76_03710 0.72 -0.7
741,062 - HUW76_03710 0.72 +0.5
741,062 - HUW76_03710 0.72 -1.2
741,063 - HUW76_03710 0.72 -0.2
741,063 - HUW76_03710 0.72 -0.4
741,063 - HUW76_03710 0.72 -0.6
741,063 - HUW76_03710 0.72 -0.3
741,126 - HUW76_03710 0.76 -0.9
741,142 + HUW76_03710 0.77 +0.3
741,176 - HUW76_03710 0.79 +0.1
741,198 + HUW76_03710 0.80 -0.2
741,198 + HUW76_03710 0.80 -0.4
741,198 + HUW76_03710 0.80 +0.4
741,198 + HUW76_03710 0.80 +1.2
741,200 + HUW76_03710 0.81 -0.3
741,200 + HUW76_03710 0.81 +0.0
741,200 + HUW76_03710 0.81 +0.1
741,200 + HUW76_03710 0.81 +2.3
741,200 + HUW76_03710 0.81 +1.2
741,200 + HUW76_03710 0.81 +0.7
741,200 + HUW76_03710 0.81 -0.3
741,200 + HUW76_03710 0.81 +0.4
741,206 - HUW76_03710 0.81 -0.4
741,208 - HUW76_03710 0.81 -0.1
741,208 - HUW76_03710 0.81 -0.1
741,208 - HUW76_03710 0.81 +0.5
741,208 - HUW76_03710 0.81 -1.1
741,208 - HUW76_03710 0.81 +0.2
741,208 - HUW76_03710 0.81 -0.5
741,208 - HUW76_03710 0.81 -1.1
741,214 + HUW76_03710 0.81 +0.6
741,293 + HUW76_03710 0.86 +2.1
741,293 + HUW76_03710 0.86 +0.2
741,293 - HUW76_03710 0.86 +0.6
741,293 - HUW76_03710 0.86 -2.1
741,347 - HUW76_03710 0.89 -0.0
741,347 - HUW76_03710 0.89 -0.6
741,355 - HUW76_03710 0.90 -1.0
741,355 - HUW76_03710 0.90 +0.3
741,403 - -0.1
741,422 + +0.4
741,422 + -0.0
741,619 - -0.8
741,685 + -1.1
741,685 + +0.2
741,693 - -0.5
741,718 - -0.1
741,718 - -0.3
741,792 + -0.5
741,792 + +0.0
741,797 + +0.1
741,814 + +2.4
741,814 + -0.1
741,877 - HUW76_03715 0.11 +0.8
741,923 + HUW76_03715 0.18 -0.7
741,923 + HUW76_03715 0.18 +0.9
741,923 + HUW76_03715 0.18 -0.2
741,923 + HUW76_03715 0.18 -0.3
741,923 + HUW76_03715 0.18 +0.7
741,923 + HUW76_03715 0.18 +0.9
741,931 - HUW76_03715 0.19 -0.1
741,931 - HUW76_03715 0.19 +0.5
741,938 + HUW76_03715 0.20 +0.4
741,944 - HUW76_03715 0.21 -0.3
741,946 - HUW76_03715 0.21 -0.1
741,946 - HUW76_03715 0.21 +0.5
741,962 + HUW76_03715 0.24 -0.1
741,962 + HUW76_03715 0.24 -0.1
741,970 - HUW76_03715 0.25 -0.2
741,970 - HUW76_03715 0.25 -0.3
741,977 - HUW76_03715 0.26 -0.4
741,978 - HUW76_03715 0.26 -0.5
741,978 - HUW76_03715 0.26 -0.4
741,979 + HUW76_03715 0.26 +0.5
741,979 + HUW76_03715 0.26 +0.6
741,987 - HUW76_03715 0.28 -0.5
741,988 - HUW76_03715 0.28 -1.0
742,014 - HUW76_03715 0.32 -0.3
742,146 + HUW76_03715 0.51 +2.9
742,146 + HUW76_03715 0.51 +0.2
742,222 - HUW76_03715 0.63 -0.5
742,222 - HUW76_03715 0.63 -0.6
742,284 - HUW76_03715 0.72 -0.3
742,285 + HUW76_03715 0.72 +0.5
742,285 + HUW76_03715 0.72 -1.2
742,293 - HUW76_03715 0.73 -1.0
742,301 - HUW76_03715 0.74 -0.8
742,301 - HUW76_03715 0.74 -0.3
742,318 - HUW76_03715 0.77 -0.9
742,358 - HUW76_03715 0.83 +0.1
742,379 - HUW76_03715 0.86 -0.4
742,379 - HUW76_03715 0.86 +0.2
742,421 + -0.4
742,438 + -0.4
742,438 + +0.6
742,440 + -0.1
742,446 - -1.1
742,446 - -0.6
742,446 - +0.0
742,446 - -0.3
742,446 - -0.2

Or see this region's nucleotide sequence