Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03485

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03470 and HUW76_03475 are separated by 9 nucleotidesHUW76_03475 and HUW76_03480 are separated by 116 nucleotidesHUW76_03480 and HUW76_03485 are separated by 68 nucleotidesHUW76_03485 and HUW76_03490 are separated by 194 nucleotides HUW76_03470: HUW76_03470 - DUF1353 domain-containing protein, at 697,873 to 698,325 _03470 HUW76_03475: HUW76_03475 - phage holin family protein, at 698,335 to 698,790 _03475 HUW76_03480: HUW76_03480 - DUF1311 domain-containing protein, at 698,907 to 699,122 _03480 HUW76_03485: HUW76_03485 - pyridoxamine 5'-phosphate oxidase family protein, at 699,191 to 699,592 _03485 HUW76_03490: HUW76_03490 - Cof-type HAD-IIB family hydrolase, at 699,787 to 700,587 _03490 Position (kb) 699 700Strain fitness (log2 ratio) -2 -1 0 1 2 3at 698.196 kb on - strand, within HUW76_03470at 698.199 kb on - strand, within HUW76_03470at 698.267 kb on + strand, within HUW76_03470at 698.286 kb on + strandat 698.286 kb on + strandat 698.286 kb on + strandat 698.286 kb on + strandat 698.286 kb on + strandat 698.289 kb on - strandat 698.289 kb on - strandat 698.292 kb on - strandat 698.292 kb on - strandat 698.328 kb on - strandat 698.328 kb on - strandat 698.328 kb on - strandat 698.328 kb on - strandat 698.362 kb on - strandat 698.362 kb on - strandat 698.378 kb on + strandat 698.441 kb on + strand, within HUW76_03475at 698.564 kb on + strand, within HUW76_03475at 698.564 kb on + strand, within HUW76_03475at 698.596 kb on + strand, within HUW76_03475at 698.605 kb on + strand, within HUW76_03475at 698.628 kb on + strand, within HUW76_03475at 698.632 kb on - strand, within HUW76_03475at 698.632 kb on - strand, within HUW76_03475at 698.669 kb on + strand, within HUW76_03475at 698.670 kb on - strand, within HUW76_03475at 698.809 kb on + strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 699.094 kb on + strand, within HUW76_03480at 699.094 kb on + strand, within HUW76_03480at 699.275 kb on + strand, within HUW76_03485at 699.275 kb on + strand, within HUW76_03485at 699.293 kb on - strand, within HUW76_03485at 699.293 kb on - strand, within HUW76_03485at 699.309 kb on + strand, within HUW76_03485at 699.437 kb on - strand, within HUW76_03485at 699.510 kb on + strand, within HUW76_03485at 699.518 kb on - strand, within HUW76_03485at 699.518 kb on - strand, within HUW76_03485at 699.518 kb on - strand, within HUW76_03485at 699.538 kb on - strand, within HUW76_03485at 699.548 kb on - strand, within HUW76_03485at 699.548 kb on - strand, within HUW76_03485at 699.548 kb on - strand, within HUW76_03485at 699.561 kb on - strandat 699.561 kb on - strandat 699.610 kb on - strandat 699.610 kb on - strandat 699.611 kb on + strandat 699.611 kb on + strandat 699.746 kb on + strandat 699.816 kb on + strandat 699.824 kb on - strandat 699.833 kb on + strandat 699.833 kb on + strandat 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.915 kb on + strand, within HUW76_03490at 699.921 kb on + strand, within HUW76_03490at 699.921 kb on + strand, within HUW76_03490at 699.921 kb on + strand, within HUW76_03490at 699.923 kb on - strand, within HUW76_03490at 699.923 kb on - strand, within HUW76_03490at 699.923 kb on - strand, within HUW76_03490at 699.923 kb on - strand, within HUW76_03490at 699.923 kb on - strand, within HUW76_03490at 699.923 kb on - strand, within HUW76_03490at 699.923 kb on - strand, within HUW76_03490at 699.928 kb on - strand, within HUW76_03490at 699.928 kb on - strand, within HUW76_03490at 699.929 kb on - strand, within HUW76_03490at 699.929 kb on - strand, within HUW76_03490at 699.929 kb on - strand, within HUW76_03490at 699.953 kb on + strand, within HUW76_03490at 699.989 kb on + strand, within HUW76_03490at 699.989 kb on + strand, within HUW76_03490at 700.052 kb on - strand, within HUW76_03490at 700.073 kb on + strand, within HUW76_03490at 700.073 kb on + strand, within HUW76_03490at 700.082 kb on - strand, within HUW76_03490at 700.118 kb on + strand, within HUW76_03490at 700.118 kb on + strand, within HUW76_03490at 700.124 kb on - strand, within HUW76_03490at 700.126 kb on - strand, within HUW76_03490at 700.126 kb on - strand, within HUW76_03490at 700.183 kb on + strand, within HUW76_03490at 700.243 kb on + strand, within HUW76_03490at 700.356 kb on + strand, within HUW76_03490at 700.356 kb on + strand, within HUW76_03490at 700.364 kb on - strand, within HUW76_03490at 700.364 kb on - strand, within HUW76_03490at 700.364 kb on - strand, within HUW76_03490at 700.399 kb on - strand, within HUW76_03490at 700.413 kb on - strand, within HUW76_03490at 700.415 kb on + strand, within HUW76_03490at 700.423 kb on - strand, within HUW76_03490at 700.427 kb on + strand, within HUW76_03490at 700.427 kb on + strand, within HUW76_03490at 700.435 kb on - strand, within HUW76_03490at 700.486 kb on + strand, within HUW76_03490at 700.486 kb on + strand, within HUW76_03490at 700.503 kb on - strand, within HUW76_03490at 700.504 kb on + strand, within HUW76_03490

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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698,196 - HUW76_03470 0.71 +0.1
698,199 - HUW76_03470 0.72 +1.7
698,267 + HUW76_03470 0.87 +0.9
698,286 + -0.5
698,286 + +0.0
698,286 + -0.2
698,286 + -0.3
698,286 + -0.6
698,289 - +3.3
698,289 - +2.9
698,292 - +0.6
698,292 - +0.1
698,328 - +1.1
698,328 - +0.9
698,328 - +1.6
698,328 - +0.4
698,362 - +1.5
698,362 - +0.2
698,378 + -2.0
698,441 + HUW76_03475 0.23 -0.1
698,564 + HUW76_03475 0.50 +0.1
698,564 + HUW76_03475 0.50 -0.3
698,596 + HUW76_03475 0.57 -0.5
698,605 + HUW76_03475 0.59 -0.7
698,628 + HUW76_03475 0.64 -0.2
698,632 - HUW76_03475 0.65 -1.0
698,632 - HUW76_03475 0.65 +1.1
698,669 + HUW76_03475 0.73 -0.9
698,670 - HUW76_03475 0.73 +0.1
698,809 + -0.2
698,907 - +0.3
698,907 - -0.4
698,907 - +0.6
698,907 - -0.3
698,907 - -1.0
698,907 - -0.2
698,907 - -0.2
698,907 - +0.6
699,094 + HUW76_03480 0.87 -0.4
699,094 + HUW76_03480 0.87 -0.0
699,275 + HUW76_03485 0.21 -0.0
699,275 + HUW76_03485 0.21 +1.9
699,293 - HUW76_03485 0.25 +0.4
699,293 - HUW76_03485 0.25 +0.7
699,309 + HUW76_03485 0.29 +0.9
699,437 - HUW76_03485 0.61 +0.5
699,510 + HUW76_03485 0.79 +0.4
699,518 - HUW76_03485 0.81 -0.6
699,518 - HUW76_03485 0.81 -0.2
699,518 - HUW76_03485 0.81 -0.3
699,538 - HUW76_03485 0.86 -0.5
699,548 - HUW76_03485 0.89 -0.9
699,548 - HUW76_03485 0.89 +0.8
699,548 - HUW76_03485 0.89 -0.6
699,561 - +0.0
699,561 - -0.2
699,610 - -0.4
699,610 - -0.6
699,611 + -0.8
699,611 + -0.5
699,746 + +0.1
699,816 + +0.1
699,824 - +0.6
699,833 + +0.4
699,833 + -0.4
699,915 + HUW76_03490 0.16 +2.0
699,915 + HUW76_03490 0.16 -0.6
699,915 + HUW76_03490 0.16 -0.2
699,915 + HUW76_03490 0.16 -0.1
699,915 + HUW76_03490 0.16 -0.1
699,915 + HUW76_03490 0.16 -0.8
699,915 + HUW76_03490 0.16 +0.0
699,915 + HUW76_03490 0.16 -1.0
699,915 + HUW76_03490 0.16 +1.0
699,921 + HUW76_03490 0.17 -0.9
699,921 + HUW76_03490 0.17 +0.2
699,921 + HUW76_03490 0.17 -0.4
699,923 - HUW76_03490 0.17 +2.4
699,923 - HUW76_03490 0.17 +0.2
699,923 - HUW76_03490 0.17 +0.8
699,923 - HUW76_03490 0.17 +1.0
699,923 - HUW76_03490 0.17 +1.4
699,923 - HUW76_03490 0.17 +0.3
699,923 - HUW76_03490 0.17 -0.1
699,928 - HUW76_03490 0.18 +1.3
699,928 - HUW76_03490 0.18 +2.4
699,929 - HUW76_03490 0.18 +0.8
699,929 - HUW76_03490 0.18 -0.1
699,929 - HUW76_03490 0.18 +0.2
699,953 + HUW76_03490 0.21 -0.7
699,989 + HUW76_03490 0.25 -0.2
699,989 + HUW76_03490 0.25 -0.5
700,052 - HUW76_03490 0.33 +0.6
700,073 + HUW76_03490 0.36 +0.4
700,073 + HUW76_03490 0.36 -0.4
700,082 - HUW76_03490 0.37 +0.3
700,118 + HUW76_03490 0.41 -1.1
700,118 + HUW76_03490 0.41 -0.9
700,124 - HUW76_03490 0.42 +1.0
700,126 - HUW76_03490 0.42 +1.1
700,126 - HUW76_03490 0.42 +0.1
700,183 + HUW76_03490 0.49 +0.0
700,243 + HUW76_03490 0.57 -0.9
700,356 + HUW76_03490 0.71 +0.4
700,356 + HUW76_03490 0.71 -0.1
700,364 - HUW76_03490 0.72 +0.1
700,364 - HUW76_03490 0.72 +0.9
700,364 - HUW76_03490 0.72 +0.7
700,399 - HUW76_03490 0.76 +0.9
700,413 - HUW76_03490 0.78 +0.8
700,415 + HUW76_03490 0.78 -0.7
700,423 - HUW76_03490 0.79 +0.0
700,427 + HUW76_03490 0.80 -0.0
700,427 + HUW76_03490 0.80 -0.7
700,435 - HUW76_03490 0.81 +1.4
700,486 + HUW76_03490 0.87 +1.3
700,486 + HUW76_03490 0.87 -0.4
700,503 - HUW76_03490 0.89 +0.7
700,504 + HUW76_03490 0.90 -1.0

Or see this region's nucleotide sequence