Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03400

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03390 and HUW76_03395 overlap by 1 nucleotidesHUW76_03395 and HUW76_03400 overlap by 1 nucleotidesHUW76_03400 and HUW76_03405 are separated by 110 nucleotides HUW76_03390: HUW76_03390 - hypothetical protein, at 686,273 to 687,313 _03390 HUW76_03395: HUW76_03395 - hypothetical protein, at 687,313 to 687,711 _03395 HUW76_03400: HUW76_03400 - hypothetical protein, at 687,711 to 688,094 _03400 HUW76_03405: HUW76_03405 - hypothetical protein, at 688,205 to 690,506 _03405 Position (kb) 687 688 689Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 686.787 kb on - strand, within HUW76_03390at 687.068 kb on - strand, within HUW76_03390at 687.068 kb on - strand, within HUW76_03390at 687.078 kb on - strand, within HUW76_03390at 687.078 kb on - strand, within HUW76_03390at 687.089 kb on - strand, within HUW76_03390at 687.089 kb on - strand, within HUW76_03390at 687.089 kb on - strand, within HUW76_03390at 687.177 kb on - strand, within HUW76_03390at 687.177 kb on - strand, within HUW76_03390at 687.218 kb on - strandat 687.228 kb on - strandat 687.228 kb on - strandat 687.251 kb on - strandat 687.303 kb on - strandat 687.373 kb on - strand, within HUW76_03395at 687.540 kb on - strand, within HUW76_03395at 687.540 kb on - strand, within HUW76_03395at 687.588 kb on - strand, within HUW76_03395at 687.646 kb on - strand, within HUW76_03395at 687.689 kb on + strandat 687.697 kb on - strandat 687.697 kb on - strandat 687.697 kb on - strandat 687.713 kb on + strandat 687.756 kb on - strand, within HUW76_03400at 687.756 kb on - strand, within HUW76_03400at 687.792 kb on + strand, within HUW76_03400at 687.793 kb on + strand, within HUW76_03400at 687.801 kb on + strand, within HUW76_03400at 687.801 kb on - strand, within HUW76_03400at 687.801 kb on - strand, within HUW76_03400at 687.847 kb on + strand, within HUW76_03400at 687.847 kb on + strand, within HUW76_03400at 687.855 kb on - strand, within HUW76_03400at 688.018 kb on - strand, within HUW76_03400at 688.087 kb on - strandat 688.156 kb on + strandat 688.156 kb on + strandat 688.163 kb on + strandat 688.163 kb on + strandat 688.164 kb on - strandat 688.164 kb on - strandat 688.171 kb on - strandat 688.171 kb on - strandat 688.172 kb on + strandat 688.172 kb on + strandat 688.252 kb on + strandat 688.252 kb on + strandat 688.264 kb on + strandat 688.264 kb on + strandat 688.264 kb on + strandat 688.272 kb on - strandat 688.272 kb on - strandat 688.272 kb on - strandat 688.311 kb on + strandat 688.317 kb on - strandat 688.317 kb on - strandat 688.324 kb on - strandat 688.324 kb on - strandat 688.397 kb on - strandat 688.411 kb on + strandat 688.435 kb on - strandat 688.435 kb on - strandat 688.463 kb on - strand, within HUW76_03405at 688.463 kb on - strand, within HUW76_03405at 688.475 kb on - strand, within HUW76_03405at 688.501 kb on - strand, within HUW76_03405at 688.501 kb on - strand, within HUW76_03405at 688.501 kb on - strand, within HUW76_03405at 688.621 kb on + strand, within HUW76_03405at 688.629 kb on - strand, within HUW76_03405at 688.629 kb on - strand, within HUW76_03405at 688.745 kb on + strand, within HUW76_03405at 688.745 kb on - strand, within HUW76_03405at 688.757 kb on + strand, within HUW76_03405at 688.758 kb on + strand, within HUW76_03405at 688.763 kb on + strand, within HUW76_03405at 688.763 kb on + strand, within HUW76_03405at 688.765 kb on - strand, within HUW76_03405at 688.765 kb on - strand, within HUW76_03405at 688.765 kb on - strand, within HUW76_03405at 688.765 kb on - strand, within HUW76_03405at 688.771 kb on - strand, within HUW76_03405at 688.771 kb on - strand, within HUW76_03405at 688.776 kb on + strand, within HUW76_03405at 688.786 kb on + strand, within HUW76_03405at 688.807 kb on + strand, within HUW76_03405at 688.807 kb on - strand, within HUW76_03405at 688.807 kb on - strand, within HUW76_03405at 688.824 kb on + strand, within HUW76_03405at 688.836 kb on - strand, within HUW76_03405at 688.836 kb on - strand, within HUW76_03405at 688.865 kb on + strand, within HUW76_03405at 688.865 kb on + strand, within HUW76_03405at 688.865 kb on + strand, within HUW76_03405at 688.886 kb on + strand, within HUW76_03405at 688.886 kb on + strand, within HUW76_03405at 688.899 kb on + strand, within HUW76_03405at 688.899 kb on + strand, within HUW76_03405at 688.901 kb on + strand, within HUW76_03405at 688.901 kb on + strand, within HUW76_03405at 688.909 kb on + strand, within HUW76_03405at 688.909 kb on + strand, within HUW76_03405at 688.909 kb on + strand, within HUW76_03405at 688.959 kb on + strand, within HUW76_03405

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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686,787 - HUW76_03390 0.49 +0.7
687,068 - HUW76_03390 0.76 +1.5
687,068 - HUW76_03390 0.76 +1.5
687,078 - HUW76_03390 0.77 -0.4
687,078 - HUW76_03390 0.77 +0.8
687,089 - HUW76_03390 0.78 +0.3
687,089 - HUW76_03390 0.78 +0.0
687,089 - HUW76_03390 0.78 -0.1
687,177 - HUW76_03390 0.87 +1.1
687,177 - HUW76_03390 0.87 -0.1
687,218 - -0.2
687,228 - -0.9
687,228 - -0.4
687,251 - +0.8
687,303 - +0.6
687,373 - HUW76_03395 0.15 +0.3
687,540 - HUW76_03395 0.57 +0.6
687,540 - HUW76_03395 0.57 -0.5
687,588 - HUW76_03395 0.69 -0.4
687,646 - HUW76_03395 0.83 -0.3
687,689 + +2.3
687,697 - +0.7
687,697 - -0.5
687,697 - +0.3
687,713 + +2.5
687,756 - HUW76_03400 0.12 +0.6
687,756 - HUW76_03400 0.12 +0.3
687,792 + HUW76_03400 0.21 +2.0
687,793 + HUW76_03400 0.21 +1.9
687,801 + HUW76_03400 0.23 +1.5
687,801 - HUW76_03400 0.23 -0.2
687,801 - HUW76_03400 0.23 -0.1
687,847 + HUW76_03400 0.35 +1.2
687,847 + HUW76_03400 0.35 +3.5
687,855 - HUW76_03400 0.38 +1.6
688,018 - HUW76_03400 0.80 +0.5
688,087 - -0.1
688,156 + +3.3
688,156 + +0.9
688,163 + +2.4
688,163 + +2.5
688,164 - -1.7
688,164 - -1.5
688,171 - +0.2
688,171 - +0.5
688,172 + +1.9
688,172 + +3.7
688,252 + -0.3
688,252 + +0.9
688,264 + +4.0
688,264 + +4.8
688,264 + +0.1
688,272 - +1.0
688,272 - -0.1
688,272 - +0.8
688,311 + +4.5
688,317 - +0.7
688,317 - +0.8
688,324 - +0.0
688,324 - +0.8
688,397 - +0.9
688,411 + +2.4
688,435 - -0.3
688,435 - -2.5
688,463 - HUW76_03405 0.11 -0.1
688,463 - HUW76_03405 0.11 +0.1
688,475 - HUW76_03405 0.12 +0.9
688,501 - HUW76_03405 0.13 +1.6
688,501 - HUW76_03405 0.13 +2.2
688,501 - HUW76_03405 0.13 +0.9
688,621 + HUW76_03405 0.18 +0.3
688,629 - HUW76_03405 0.18 +1.7
688,629 - HUW76_03405 0.18 +0.5
688,745 + HUW76_03405 0.23 +2.6
688,745 - HUW76_03405 0.23 +0.2
688,757 + HUW76_03405 0.24 +1.9
688,758 + HUW76_03405 0.24 +3.7
688,763 + HUW76_03405 0.24 +2.0
688,763 + HUW76_03405 0.24 +3.2
688,765 - HUW76_03405 0.24 -0.0
688,765 - HUW76_03405 0.24 -0.0
688,765 - HUW76_03405 0.24 +0.0
688,765 - HUW76_03405 0.24 +0.2
688,771 - HUW76_03405 0.25 -0.3
688,771 - HUW76_03405 0.25 +0.1
688,776 + HUW76_03405 0.25 +2.1
688,786 + HUW76_03405 0.25 +1.2
688,807 + HUW76_03405 0.26 +3.5
688,807 - HUW76_03405 0.26 -0.7
688,807 - HUW76_03405 0.26 +0.3
688,824 + HUW76_03405 0.27 +3.1
688,836 - HUW76_03405 0.27 +0.3
688,836 - HUW76_03405 0.27 +0.2
688,865 + HUW76_03405 0.29 +4.3
688,865 + HUW76_03405 0.29 +4.2
688,865 + HUW76_03405 0.29 +2.0
688,886 + HUW76_03405 0.30 +1.1
688,886 + HUW76_03405 0.30 +3.9
688,899 + HUW76_03405 0.30 +3.3
688,899 + HUW76_03405 0.30 +3.0
688,901 + HUW76_03405 0.30 +2.5
688,901 + HUW76_03405 0.30 +2.9
688,909 + HUW76_03405 0.31 +3.8
688,909 + HUW76_03405 0.31 +3.2
688,909 + HUW76_03405 0.31 +4.0
688,959 + HUW76_03405 0.33 +1.2

Or see this region's nucleotide sequence