Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02495

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02490 and HUW76_02495 overlap by 14 nucleotidesHUW76_02495 and HUW76_02500 overlap by 4 nucleotides HUW76_02490: HUW76_02490 - ABC transporter ATP-binding protein, at 506,620 to 508,290 _02490 HUW76_02495: HUW76_02495 - PadR family transcriptional regulator, at 508,277 to 508,627 _02495 HUW76_02500: HUW76_02500 - class I SAM-dependent methyltransferase, at 508,624 to 509,424 _02500 Position (kb) 508 509Strain fitness (log2 ratio) -1 0 1 2 3at 507.283 kb on + strand, within HUW76_02490at 507.283 kb on + strand, within HUW76_02490at 507.283 kb on + strand, within HUW76_02490at 507.283 kb on + strand, within HUW76_02490at 507.283 kb on + strand, within HUW76_02490at 507.283 kb on + strand, within HUW76_02490at 507.283 kb on + strand, within HUW76_02490at 507.283 kb on + strand, within HUW76_02490at 507.291 kb on - strand, within HUW76_02490at 507.354 kb on + strand, within HUW76_02490at 507.354 kb on + strand, within HUW76_02490at 507.354 kb on + strand, within HUW76_02490at 507.354 kb on + strand, within HUW76_02490at 507.354 kb on + strand, within HUW76_02490at 507.362 kb on - strand, within HUW76_02490at 507.370 kb on + strand, within HUW76_02490at 507.378 kb on + strand, within HUW76_02490at 507.378 kb on + strand, within HUW76_02490at 507.378 kb on + strand, within HUW76_02490at 507.378 kb on + strand, within HUW76_02490at 507.378 kb on - strand, within HUW76_02490at 507.378 kb on - strand, within HUW76_02490at 507.386 kb on - strand, within HUW76_02490at 507.386 kb on - strand, within HUW76_02490at 507.386 kb on - strand, within HUW76_02490at 507.406 kb on + strand, within HUW76_02490at 507.406 kb on + strand, within HUW76_02490at 507.435 kb on - strand, within HUW76_02490at 507.478 kb on + strand, within HUW76_02490at 507.484 kb on - strand, within HUW76_02490at 507.493 kb on + strand, within HUW76_02490at 507.493 kb on + strand, within HUW76_02490at 507.599 kb on + strand, within HUW76_02490at 507.612 kb on + strand, within HUW76_02490at 507.612 kb on - strand, within HUW76_02490at 507.612 kb on - strand, within HUW76_02490at 507.637 kb on - strand, within HUW76_02490at 507.637 kb on - strand, within HUW76_02490at 507.641 kb on + strand, within HUW76_02490at 507.641 kb on + strand, within HUW76_02490at 507.641 kb on + strand, within HUW76_02490at 507.649 kb on - strand, within HUW76_02490at 507.649 kb on - strand, within HUW76_02490at 507.649 kb on - strand, within HUW76_02490at 507.649 kb on - strand, within HUW76_02490at 507.649 kb on - strand, within HUW76_02490at 507.649 kb on - strand, within HUW76_02490at 507.792 kb on + strand, within HUW76_02490at 507.861 kb on + strand, within HUW76_02490at 507.861 kb on + strand, within HUW76_02490at 507.997 kb on + strand, within HUW76_02490at 508.034 kb on + strand, within HUW76_02490at 508.063 kb on + strand, within HUW76_02490at 508.063 kb on + strand, within HUW76_02490at 508.063 kb on + strand, within HUW76_02490at 508.068 kb on + strand, within HUW76_02490at 508.068 kb on + strand, within HUW76_02490at 508.068 kb on + strand, within HUW76_02490at 508.068 kb on + strand, within HUW76_02490at 508.144 kb on - strandat 508.144 kb on - strandat 508.167 kb on + strandat 508.167 kb on + strandat 508.169 kb on + strandat 508.169 kb on + strandat 508.169 kb on + strandat 508.169 kb on + strandat 508.169 kb on + strandat 508.169 kb on + strandat 508.169 kb on + strandat 508.177 kb on - strandat 508.177 kb on - strandat 508.177 kb on - strandat 508.177 kb on - strandat 508.177 kb on - strandat 508.177 kb on - strandat 508.208 kb on - strandat 508.208 kb on - strandat 508.221 kb on + strandat 508.221 kb on + strandat 508.221 kb on + strandat 508.233 kb on + strandat 508.241 kb on - strandat 508.293 kb on + strandat 508.293 kb on + strandat 508.361 kb on - strand, within HUW76_02495at 508.386 kb on + strand, within HUW76_02495at 508.408 kb on + strand, within HUW76_02495at 508.418 kb on + strand, within HUW76_02495at 508.418 kb on + strand, within HUW76_02495at 508.418 kb on + strand, within HUW76_02495at 508.418 kb on + strand, within HUW76_02495at 508.426 kb on - strand, within HUW76_02495at 508.426 kb on - strand, within HUW76_02495at 508.426 kb on - strand, within HUW76_02495at 508.428 kb on - strand, within HUW76_02495at 508.438 kb on - strand, within HUW76_02495at 508.470 kb on + strand, within HUW76_02495at 508.470 kb on + strand, within HUW76_02495at 508.479 kb on - strand, within HUW76_02495at 508.532 kb on + strand, within HUW76_02495at 508.532 kb on + strand, within HUW76_02495at 508.540 kb on - strand, within HUW76_02495at 508.658 kb on + strandat 508.714 kb on - strand, within HUW76_02500at 508.838 kb on + strand, within HUW76_02500at 508.908 kb on + strand, within HUW76_02500at 508.990 kb on + strand, within HUW76_02500at 509.008 kb on + strand, within HUW76_02500at 509.008 kb on + strand, within HUW76_02500at 509.008 kb on + strand, within HUW76_02500at 509.016 kb on - strand, within HUW76_02500at 509.029 kb on + strand, within HUW76_02500at 509.039 kb on + strand, within HUW76_02500at 509.101 kb on + strand, within HUW76_02500at 509.101 kb on + strand, within HUW76_02500at 509.101 kb on + strand, within HUW76_02500at 509.147 kb on + strand, within HUW76_02500at 509.187 kb on + strand, within HUW76_02500at 509.187 kb on + strand, within HUW76_02500at 509.189 kb on + strand, within HUW76_02500at 509.190 kb on - strand, within HUW76_02500at 509.197 kb on + strand, within HUW76_02500at 509.205 kb on - strand, within HUW76_02500at 509.205 kb on - strand, within HUW76_02500at 509.281 kb on + strand, within HUW76_02500at 509.281 kb on + strand, within HUW76_02500at 509.298 kb on + strand, within HUW76_02500at 509.345 kb on + strandat 509.438 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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507,283 + HUW76_02490 0.40 +0.1
507,283 + HUW76_02490 0.40 -0.5
507,283 + HUW76_02490 0.40 -0.6
507,283 + HUW76_02490 0.40 -0.1
507,283 + HUW76_02490 0.40 +0.1
507,283 + HUW76_02490 0.40 +0.1
507,283 + HUW76_02490 0.40 +1.6
507,283 + HUW76_02490 0.40 +0.5
507,291 - HUW76_02490 0.40 -0.0
507,354 + HUW76_02490 0.44 -0.6
507,354 + HUW76_02490 0.44 -1.2
507,354 + HUW76_02490 0.44 -0.3
507,354 + HUW76_02490 0.44 -1.3
507,354 + HUW76_02490 0.44 -0.4
507,362 - HUW76_02490 0.44 +1.1
507,370 + HUW76_02490 0.45 -0.5
507,378 + HUW76_02490 0.45 -0.0
507,378 + HUW76_02490 0.45 -0.3
507,378 + HUW76_02490 0.45 -1.2
507,378 + HUW76_02490 0.45 -0.9
507,378 - HUW76_02490 0.45 -0.0
507,378 - HUW76_02490 0.45 +1.3
507,386 - HUW76_02490 0.46 +0.8
507,386 - HUW76_02490 0.46 -1.4
507,386 - HUW76_02490 0.46 -0.8
507,406 + HUW76_02490 0.47 +0.1
507,406 + HUW76_02490 0.47 -0.2
507,435 - HUW76_02490 0.49 +0.4
507,478 + HUW76_02490 0.51 -0.5
507,484 - HUW76_02490 0.52 -1.5
507,493 + HUW76_02490 0.52 -0.4
507,493 + HUW76_02490 0.52 -0.8
507,599 + HUW76_02490 0.59 -0.3
507,612 + HUW76_02490 0.59 -0.7
507,612 - HUW76_02490 0.59 +0.4
507,612 - HUW76_02490 0.59 +2.0
507,637 - HUW76_02490 0.61 +1.1
507,637 - HUW76_02490 0.61 -0.9
507,641 + HUW76_02490 0.61 +1.6
507,641 + HUW76_02490 0.61 -0.8
507,641 + HUW76_02490 0.61 -0.8
507,649 - HUW76_02490 0.62 +1.8
507,649 - HUW76_02490 0.62 +0.7
507,649 - HUW76_02490 0.62 +1.7
507,649 - HUW76_02490 0.62 +0.6
507,649 - HUW76_02490 0.62 +1.5
507,649 - HUW76_02490 0.62 +1.2
507,792 + HUW76_02490 0.70 -0.1
507,861 + HUW76_02490 0.74 +0.1
507,861 + HUW76_02490 0.74 +0.9
507,997 + HUW76_02490 0.82 -0.9
508,034 + HUW76_02490 0.85 -0.1
508,063 + HUW76_02490 0.86 +0.0
508,063 + HUW76_02490 0.86 -0.9
508,063 + HUW76_02490 0.86 +0.0
508,068 + HUW76_02490 0.87 +0.3
508,068 + HUW76_02490 0.87 +0.1
508,068 + HUW76_02490 0.87 +0.5
508,068 + HUW76_02490 0.87 -0.3
508,144 - -0.0
508,144 - +0.8
508,167 + -0.2
508,167 + -0.3
508,169 + -0.2
508,169 + +0.0
508,169 + +0.1
508,169 + -0.6
508,169 + -0.2
508,169 + +0.7
508,169 + -0.6
508,177 - -0.0
508,177 - +0.3
508,177 - +1.0
508,177 - +3.0
508,177 - +0.3
508,177 - -0.0
508,208 - +0.4
508,208 - +0.1
508,221 + -0.5
508,221 + -0.3
508,221 + -0.1
508,233 + -0.6
508,241 - -0.6
508,293 + +0.1
508,293 + -0.1
508,361 - HUW76_02495 0.24 -0.5
508,386 + HUW76_02495 0.31 -0.4
508,408 + HUW76_02495 0.37 +0.0
508,418 + HUW76_02495 0.40 +0.4
508,418 + HUW76_02495 0.40 -0.6
508,418 + HUW76_02495 0.40 +0.1
508,418 + HUW76_02495 0.40 +0.3
508,426 - HUW76_02495 0.42 +0.9
508,426 - HUW76_02495 0.42 +0.3
508,426 - HUW76_02495 0.42 +2.1
508,428 - HUW76_02495 0.43 -0.4
508,438 - HUW76_02495 0.46 +0.3
508,470 + HUW76_02495 0.55 -0.3
508,470 + HUW76_02495 0.55 -0.5
508,479 - HUW76_02495 0.58 +0.5
508,532 + HUW76_02495 0.73 -0.2
508,532 + HUW76_02495 0.73 -0.1
508,540 - HUW76_02495 0.75 +0.6
508,658 + -0.3
508,714 - HUW76_02500 0.11 +0.7
508,838 + HUW76_02500 0.27 -0.4
508,908 + HUW76_02500 0.35 -0.5
508,990 + HUW76_02500 0.46 +0.1
509,008 + HUW76_02500 0.48 -1.0
509,008 + HUW76_02500 0.48 -0.1
509,008 + HUW76_02500 0.48 -0.3
509,016 - HUW76_02500 0.49 +1.0
509,029 + HUW76_02500 0.51 -0.2
509,039 + HUW76_02500 0.52 -0.1
509,101 + HUW76_02500 0.60 +0.5
509,101 + HUW76_02500 0.60 +0.0
509,101 + HUW76_02500 0.60 +0.3
509,147 + HUW76_02500 0.65 +0.1
509,187 + HUW76_02500 0.70 +0.1
509,187 + HUW76_02500 0.70 -0.2
509,189 + HUW76_02500 0.71 +0.3
509,190 - HUW76_02500 0.71 -0.2
509,197 + HUW76_02500 0.72 +0.4
509,205 - HUW76_02500 0.73 +0.9
509,205 - HUW76_02500 0.73 +1.4
509,281 + HUW76_02500 0.82 -1.6
509,281 + HUW76_02500 0.82 -0.5
509,298 + HUW76_02500 0.84 -0.2
509,345 + +0.3
509,438 + -0.3

Or see this region's nucleotide sequence