Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01685

Experiment: T5 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01683 and OHPLBJKB_01684 are separated by 82 nucleotidesOHPLBJKB_01684 and OHPLBJKB_01685 are separated by 24 nucleotidesOHPLBJKB_01685 and OHPLBJKB_01686 are separated by 266 nucleotides OHPLBJKB_01683: OHPLBJKB_01683 - Toxin YoeB, at 1,775,307 to 1,775,561 _01683 OHPLBJKB_01684: OHPLBJKB_01684 - Protein YeeZ, at 1,775,644 to 1,776,468 _01684 OHPLBJKB_01685: OHPLBJKB_01685 - HTH-type transcriptional regulator YhaJ, at 1,776,493 to 1,777,443 _01685 OHPLBJKB_01686: OHPLBJKB_01686 - Low-affinity putrescine importer PlaP, at 1,777,710 to 1,779,068 _01686 Position (kb) 1776 1777 1778Strain fitness (log2 ratio) -2 -1 0 1 2at 1775.508 kb on + strand, within OHPLBJKB_01683at 1775.508 kb on + strand, within OHPLBJKB_01683at 1775.520 kb on + strand, within OHPLBJKB_01683at 1775.521 kb on - strand, within OHPLBJKB_01683at 1775.607 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.615 kb on + strandat 1775.616 kb on - strandat 1775.616 kb on - strandat 1775.616 kb on - strandat 1775.616 kb on - strandat 1775.621 kb on + strandat 1775.622 kb on - strandat 1775.622 kb on - strandat 1775.622 kb on - strandat 1775.629 kb on - strandat 1775.669 kb on + strandat 1775.734 kb on - strand, within OHPLBJKB_01684at 1775.781 kb on + strand, within OHPLBJKB_01684at 1775.782 kb on - strand, within OHPLBJKB_01684at 1775.782 kb on - strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.785 kb on + strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.786 kb on - strand, within OHPLBJKB_01684at 1775.810 kb on + strand, within OHPLBJKB_01684at 1775.810 kb on + strand, within OHPLBJKB_01684at 1775.884 kb on - strand, within OHPLBJKB_01684at 1775.905 kb on + strand, within OHPLBJKB_01684at 1775.910 kb on - strand, within OHPLBJKB_01684at 1775.928 kb on - strand, within OHPLBJKB_01684at 1775.953 kb on - strand, within OHPLBJKB_01684at 1775.990 kb on - strand, within OHPLBJKB_01684at 1776.031 kb on - strand, within OHPLBJKB_01684at 1776.060 kb on - strand, within OHPLBJKB_01684at 1776.060 kb on - strand, within OHPLBJKB_01684at 1776.060 kb on - strand, within OHPLBJKB_01684at 1776.089 kb on + strand, within OHPLBJKB_01684at 1776.089 kb on + strand, within OHPLBJKB_01684at 1776.089 kb on + strand, within OHPLBJKB_01684at 1776.255 kb on + strand, within OHPLBJKB_01684at 1776.256 kb on - strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.271 kb on + strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.272 kb on - strand, within OHPLBJKB_01684at 1776.273 kb on + strand, within OHPLBJKB_01684at 1776.274 kb on - strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.276 kb on + strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.277 kb on - strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.278 kb on + strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.279 kb on - strand, within OHPLBJKB_01684at 1776.364 kb on - strand, within OHPLBJKB_01684at 1776.364 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.385 kb on - strand, within OHPLBJKB_01684at 1776.390 kb on + strandat 1776.412 kb on - strandat 1776.430 kb on + strandat 1776.513 kb on + strandat 1776.596 kb on - strand, within OHPLBJKB_01685at 1776.596 kb on - strand, within OHPLBJKB_01685at 1776.620 kb on - strand, within OHPLBJKB_01685at 1776.648 kb on + strand, within OHPLBJKB_01685at 1776.649 kb on - strand, within OHPLBJKB_01685at 1776.649 kb on - strand, within OHPLBJKB_01685at 1776.652 kb on - strand, within OHPLBJKB_01685at 1776.711 kb on - strand, within OHPLBJKB_01685at 1776.948 kb on + strand, within OHPLBJKB_01685at 1777.232 kb on - strand, within OHPLBJKB_01685at 1777.235 kb on + strand, within OHPLBJKB_01685at 1777.390 kb on - strandat 1777.453 kb on - strandat 1777.612 kb on + strandat 1777.612 kb on + strandat 1777.612 kb on + strandat 1777.612 kb on + strandat 1777.612 kb on + strandat 1777.612 kb on + strandat 1777.612 kb on + strandat 1777.612 kb on + strandat 1777.676 kb on + strandat 1777.724 kb on + strandat 1777.764 kb on - strandat 1777.768 kb on + strandat 1777.768 kb on + strandat 1777.780 kb on + strandat 1777.780 kb on + strandat 1777.780 kb on + strandat 1777.780 kb on + strandat 1777.780 kb on + strandat 1777.780 kb on + strandat 1777.797 kb on + strandat 1777.797 kb on + strandat 1777.797 kb on + strandat 1777.797 kb on + strandat 1777.798 kb on - strandat 1777.798 kb on - strandat 1777.798 kb on - strandat 1777.798 kb on - strandat 1777.798 kb on - strandat 1777.798 kb on - strandat 1777.799 kb on + strandat 1777.800 kb on - strandat 1777.800 kb on - strandat 1777.873 kb on - strand, within OHPLBJKB_01686at 1777.873 kb on - strand, within OHPLBJKB_01686at 1777.873 kb on - strand, within OHPLBJKB_01686at 1777.956 kb on + strand, within OHPLBJKB_01686at 1777.957 kb on - strand, within OHPLBJKB_01686at 1777.962 kb on + strand, within OHPLBJKB_01686at 1777.963 kb on - strand, within OHPLBJKB_01686at 1777.963 kb on - strand, within OHPLBJKB_01686at 1778.026 kb on - strand, within OHPLBJKB_01686at 1778.129 kb on + strand, within OHPLBJKB_01686at 1778.130 kb on - strand, within OHPLBJKB_01686at 1778.150 kb on + strand, within OHPLBJKB_01686at 1778.150 kb on + strand, within OHPLBJKB_01686at 1778.182 kb on + strand, within OHPLBJKB_01686at 1778.182 kb on + strand, within OHPLBJKB_01686at 1778.200 kb on + strand, within OHPLBJKB_01686at 1778.242 kb on + strand, within OHPLBJKB_01686

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Per-strain Table

Position Strand Gene LocusTag Fraction T5 MOI1
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1,775,508 + OHPLBJKB_01683 0.79 -0.5
1,775,508 + OHPLBJKB_01683 0.79 -0.2
1,775,520 + OHPLBJKB_01683 0.84 +0.1
1,775,521 - OHPLBJKB_01683 0.84 +0.4
1,775,607 + -0.5
1,775,615 + -0.7
1,775,615 + +0.4
1,775,615 + +0.1
1,775,615 + -0.8
1,775,615 + -0.2
1,775,615 + +0.7
1,775,615 + +0.7
1,775,616 - +2.0
1,775,616 - -1.4
1,775,616 - -0.3
1,775,616 - +0.5
1,775,621 + -0.9
1,775,622 - +0.4
1,775,622 - -0.5
1,775,622 - +1.4
1,775,629 - +0.4
1,775,669 + -0.7
1,775,734 - OHPLBJKB_01684 0.11 +0.2
1,775,781 + OHPLBJKB_01684 0.17 -1.5
1,775,782 - OHPLBJKB_01684 0.17 -1.5
1,775,782 - OHPLBJKB_01684 0.17 +0.1
1,775,785 + OHPLBJKB_01684 0.17 +0.4
1,775,785 + OHPLBJKB_01684 0.17 +0.2
1,775,785 + OHPLBJKB_01684 0.17 -1.0
1,775,785 + OHPLBJKB_01684 0.17 +0.4
1,775,785 + OHPLBJKB_01684 0.17 +0.7
1,775,785 + OHPLBJKB_01684 0.17 -0.4
1,775,786 - OHPLBJKB_01684 0.17 -1.6
1,775,786 - OHPLBJKB_01684 0.17 +0.3
1,775,786 - OHPLBJKB_01684 0.17 -0.8
1,775,786 - OHPLBJKB_01684 0.17 +0.2
1,775,786 - OHPLBJKB_01684 0.17 +0.8
1,775,786 - OHPLBJKB_01684 0.17 -0.4
1,775,810 + OHPLBJKB_01684 0.20 -0.6
1,775,810 + OHPLBJKB_01684 0.20 +0.6
1,775,884 - OHPLBJKB_01684 0.29 -0.8
1,775,905 + OHPLBJKB_01684 0.32 +0.7
1,775,910 - OHPLBJKB_01684 0.32 +0.6
1,775,928 - OHPLBJKB_01684 0.34 +0.8
1,775,953 - OHPLBJKB_01684 0.37 -2.0
1,775,990 - OHPLBJKB_01684 0.42 -0.4
1,776,031 - OHPLBJKB_01684 0.47 +0.7
1,776,060 - OHPLBJKB_01684 0.50 +1.4
1,776,060 - OHPLBJKB_01684 0.50 -1.5
1,776,060 - OHPLBJKB_01684 0.50 -0.9
1,776,089 + OHPLBJKB_01684 0.54 -0.2
1,776,089 + OHPLBJKB_01684 0.54 +0.6
1,776,089 + OHPLBJKB_01684 0.54 +0.5
1,776,255 + OHPLBJKB_01684 0.74 +0.8
1,776,256 - OHPLBJKB_01684 0.74 -0.6
1,776,271 + OHPLBJKB_01684 0.76 +0.0
1,776,271 + OHPLBJKB_01684 0.76 +1.0
1,776,271 + OHPLBJKB_01684 0.76 +0.5
1,776,271 + OHPLBJKB_01684 0.76 +0.1
1,776,272 - OHPLBJKB_01684 0.76 -1.7
1,776,272 - OHPLBJKB_01684 0.76 -1.3
1,776,272 - OHPLBJKB_01684 0.76 -1.1
1,776,272 - OHPLBJKB_01684 0.76 -0.5
1,776,272 - OHPLBJKB_01684 0.76 -0.6
1,776,272 - OHPLBJKB_01684 0.76 -0.4
1,776,273 + OHPLBJKB_01684 0.76 +0.4
1,776,274 - OHPLBJKB_01684 0.76 -0.0
1,776,276 + OHPLBJKB_01684 0.77 -0.4
1,776,276 + OHPLBJKB_01684 0.77 -0.5
1,776,276 + OHPLBJKB_01684 0.77 -2.2
1,776,276 + OHPLBJKB_01684 0.77 -0.6
1,776,276 + OHPLBJKB_01684 0.77 -0.2
1,776,276 + OHPLBJKB_01684 0.77 +1.0
1,776,276 + OHPLBJKB_01684 0.77 -0.6
1,776,277 - OHPLBJKB_01684 0.77 +0.5
1,776,277 - OHPLBJKB_01684 0.77 -2.5
1,776,277 - OHPLBJKB_01684 0.77 -0.5
1,776,277 - OHPLBJKB_01684 0.77 +0.1
1,776,277 - OHPLBJKB_01684 0.77 +0.9
1,776,277 - OHPLBJKB_01684 0.77 -1.7
1,776,278 + OHPLBJKB_01684 0.77 +0.1
1,776,278 + OHPLBJKB_01684 0.77 +0.2
1,776,278 + OHPLBJKB_01684 0.77 -0.4
1,776,278 + OHPLBJKB_01684 0.77 -1.7
1,776,278 + OHPLBJKB_01684 0.77 -0.6
1,776,278 + OHPLBJKB_01684 0.77 +0.1
1,776,278 + OHPLBJKB_01684 0.77 +0.5
1,776,278 + OHPLBJKB_01684 0.77 -0.3
1,776,278 + OHPLBJKB_01684 0.77 +0.3
1,776,278 + OHPLBJKB_01684 0.77 -0.2
1,776,278 + OHPLBJKB_01684 0.77 -0.2
1,776,279 - OHPLBJKB_01684 0.77 +0.3
1,776,279 - OHPLBJKB_01684 0.77 +1.1
1,776,279 - OHPLBJKB_01684 0.77 +0.5
1,776,279 - OHPLBJKB_01684 0.77 -0.3
1,776,279 - OHPLBJKB_01684 0.77 +0.5
1,776,279 - OHPLBJKB_01684 0.77 +0.4
1,776,279 - OHPLBJKB_01684 0.77 +0.1
1,776,279 - OHPLBJKB_01684 0.77 -0.6
1,776,279 - OHPLBJKB_01684 0.77 +0.1
1,776,279 - OHPLBJKB_01684 0.77 -0.1
1,776,279 - OHPLBJKB_01684 0.77 -0.2
1,776,364 - OHPLBJKB_01684 0.87 -0.8
1,776,364 - OHPLBJKB_01684 0.87 +1.1
1,776,385 - OHPLBJKB_01684 0.90 +0.9
1,776,385 - OHPLBJKB_01684 0.90 -0.5
1,776,385 - OHPLBJKB_01684 0.90 +1.6
1,776,385 - OHPLBJKB_01684 0.90 -0.2
1,776,390 + +0.0
1,776,412 - -1.5
1,776,430 + -0.0
1,776,513 + -0.5
1,776,596 - OHPLBJKB_01685 0.11 -0.2
1,776,596 - OHPLBJKB_01685 0.11 +0.5
1,776,620 - OHPLBJKB_01685 0.13 -0.5
1,776,648 + OHPLBJKB_01685 0.16 -0.2
1,776,649 - OHPLBJKB_01685 0.16 -0.5
1,776,649 - OHPLBJKB_01685 0.16 -0.0
1,776,652 - OHPLBJKB_01685 0.17 -0.8
1,776,711 - OHPLBJKB_01685 0.23 -1.3
1,776,948 + OHPLBJKB_01685 0.48 +0.1
1,777,232 - OHPLBJKB_01685 0.78 +1.2
1,777,235 + OHPLBJKB_01685 0.78 -0.9
1,777,390 - +0.8
1,777,453 - -0.5
1,777,612 + +0.1
1,777,612 + +0.6
1,777,612 + -0.2
1,777,612 + -0.4
1,777,612 + +0.2
1,777,612 + +1.0
1,777,612 + +0.0
1,777,612 + +1.7
1,777,676 + -0.2
1,777,724 + +0.7
1,777,764 - +0.8
1,777,768 + -0.1
1,777,768 + +0.8
1,777,780 + +0.1
1,777,780 + +0.1
1,777,780 + +0.0
1,777,780 + -0.7
1,777,780 + +0.3
1,777,780 + +0.6
1,777,797 + -0.2
1,777,797 + -0.3
1,777,797 + -0.9
1,777,797 + -0.4
1,777,798 - -0.6
1,777,798 - -0.6
1,777,798 - +0.8
1,777,798 - +0.8
1,777,798 - -0.4
1,777,798 - +0.2
1,777,799 + -1.2
1,777,800 - -0.7
1,777,800 - -0.5
1,777,873 - OHPLBJKB_01686 0.12 +0.4
1,777,873 - OHPLBJKB_01686 0.12 +0.6
1,777,873 - OHPLBJKB_01686 0.12 +0.4
1,777,956 + OHPLBJKB_01686 0.18 +1.0
1,777,957 - OHPLBJKB_01686 0.18 +0.8
1,777,962 + OHPLBJKB_01686 0.19 +0.5
1,777,963 - OHPLBJKB_01686 0.19 -0.6
1,777,963 - OHPLBJKB_01686 0.19 -0.4
1,778,026 - OHPLBJKB_01686 0.23 +1.5
1,778,129 + OHPLBJKB_01686 0.31 -0.5
1,778,130 - OHPLBJKB_01686 0.31 +1.0
1,778,150 + OHPLBJKB_01686 0.32 +1.0
1,778,150 + OHPLBJKB_01686 0.32 +2.7
1,778,182 + OHPLBJKB_01686 0.35 +0.4
1,778,182 + OHPLBJKB_01686 0.35 +0.9
1,778,200 + OHPLBJKB_01686 0.36 -0.8
1,778,242 + OHPLBJKB_01686 0.39 +0.1

Or see this region's nucleotide sequence