Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00494

Experiment: T5 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00492 and OHPLBJKB_00493 overlap by 4 nucleotidesOHPLBJKB_00493 and OHPLBJKB_00494 are separated by 213 nucleotidesOHPLBJKB_00494 and OHPLBJKB_00495 overlap by 4 nucleotidesOHPLBJKB_00495 and OHPLBJKB_00496 are separated by 45 nucleotides OHPLBJKB_00492: OHPLBJKB_00492 - Biosynthetic peptidoglycan transglycosylase, at 510,165 to 510,893 _00492 OHPLBJKB_00493: OHPLBJKB_00493 - putative protein YrbL, at 510,890 to 511,522 _00493 OHPLBJKB_00494: OHPLBJKB_00494 - Phosphocarrier protein NPr, at 511,736 to 512,008 _00494 OHPLBJKB_00495: OHPLBJKB_00495 - RNase adapter protein RapZ, at 512,005 to 512,859 _00495 OHPLBJKB_00496: OHPLBJKB_00496 - Nitrogen regulatory protein, at 512,905 to 513,396 _00496 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 510.763 kb on + strand, within OHPLBJKB_00492at 510.763 kb on + strand, within OHPLBJKB_00492at 510.763 kb on + strand, within OHPLBJKB_00492at 510.763 kb on + strand, within OHPLBJKB_00492at 510.763 kb on + strand, within OHPLBJKB_00492at 510.763 kb on + strand, within OHPLBJKB_00492at 510.763 kb on + strand, within OHPLBJKB_00492at 510.764 kb on - strand, within OHPLBJKB_00492at 510.764 kb on - strand, within OHPLBJKB_00492at 510.766 kb on + strand, within OHPLBJKB_00492at 510.766 kb on + strand, within OHPLBJKB_00492at 510.767 kb on - strand, within OHPLBJKB_00492at 510.767 kb on - strand, within OHPLBJKB_00492at 510.771 kb on - strand, within OHPLBJKB_00492at 510.816 kb on - strand, within OHPLBJKB_00492at 510.846 kb on + strandat 510.847 kb on - strandat 510.847 kb on - strandat 510.854 kb on - strandat 510.869 kb on + strandat 511.118 kb on - strand, within OHPLBJKB_00493at 511.165 kb on - strand, within OHPLBJKB_00493at 511.185 kb on - strand, within OHPLBJKB_00493at 511.247 kb on - strand, within OHPLBJKB_00493at 511.284 kb on + strand, within OHPLBJKB_00493at 511.285 kb on - strand, within OHPLBJKB_00493at 511.291 kb on - strand, within OHPLBJKB_00493at 511.291 kb on - strand, within OHPLBJKB_00493at 511.375 kb on - strand, within OHPLBJKB_00493at 511.377 kb on + strand, within OHPLBJKB_00493at 511.382 kb on + strand, within OHPLBJKB_00493at 511.382 kb on + strand, within OHPLBJKB_00493at 511.382 kb on + strand, within OHPLBJKB_00493at 511.382 kb on + strand, within OHPLBJKB_00493at 511.383 kb on - strand, within OHPLBJKB_00493at 511.383 kb on - strand, within OHPLBJKB_00493at 511.425 kb on + strand, within OHPLBJKB_00493at 511.538 kb on + strandat 511.538 kb on + strandat 511.559 kb on - strandat 511.569 kb on - strandat 511.573 kb on + strandat 511.584 kb on + strandat 511.717 kb on + strandat 511.717 kb on + strandat 511.717 kb on + strandat 511.717 kb on + strandat 511.717 kb on + strandat 511.717 kb on + strandat 511.717 kb on + strandat 511.718 kb on - strandat 511.718 kb on - strandat 511.718 kb on - strandat 511.718 kb on - strandat 511.718 kb on - strandat 511.718 kb on - strandat 511.737 kb on + strandat 511.737 kb on + strandat 511.738 kb on - strandat 511.759 kb on + strandat 511.760 kb on - strandat 511.897 kb on + strand, within OHPLBJKB_00494at 511.901 kb on + strand, within OHPLBJKB_00494at 511.901 kb on + strand, within OHPLBJKB_00494at 511.902 kb on - strand, within OHPLBJKB_00494at 511.932 kb on - strand, within OHPLBJKB_00494at 511.932 kb on - strand, within OHPLBJKB_00494at 511.932 kb on - strand, within OHPLBJKB_00494at 512.014 kb on - strandat 512.028 kb on + strandat 512.028 kb on + strandat 512.069 kb on + strandat 512.069 kb on + strandat 512.069 kb on + strandat 512.069 kb on + strandat 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.093 kb on + strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.094 kb on - strand, within OHPLBJKB_00495at 512.118 kb on + strand, within OHPLBJKB_00495at 512.141 kb on + strand, within OHPLBJKB_00495at 512.145 kb on + strand, within OHPLBJKB_00495at 512.145 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.166 kb on + strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.167 kb on - strand, within OHPLBJKB_00495at 512.171 kb on - strand, within OHPLBJKB_00495at 512.171 kb on - strand, within OHPLBJKB_00495at 512.176 kb on + strand, within OHPLBJKB_00495at 512.177 kb on - strand, within OHPLBJKB_00495at 512.186 kb on + strand, within OHPLBJKB_00495at 512.186 kb on + strand, within OHPLBJKB_00495at 512.187 kb on - strand, within OHPLBJKB_00495at 512.206 kb on - strand, within OHPLBJKB_00495at 512.215 kb on + strand, within OHPLBJKB_00495at 512.216 kb on - strand, within OHPLBJKB_00495at 512.253 kb on + strand, within OHPLBJKB_00495at 512.324 kb on + strand, within OHPLBJKB_00495at 512.324 kb on + strand, within OHPLBJKB_00495at 512.324 kb on + strand, within OHPLBJKB_00495at 512.325 kb on - strand, within OHPLBJKB_00495at 512.573 kb on + strand, within OHPLBJKB_00495at 512.584 kb on + strand, within OHPLBJKB_00495at 512.585 kb on - strand, within OHPLBJKB_00495at 512.585 kb on - strand, within OHPLBJKB_00495at 512.589 kb on + strand, within OHPLBJKB_00495at 512.590 kb on - strand, within OHPLBJKB_00495at 512.590 kb on - strand, within OHPLBJKB_00495at 512.590 kb on - strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.614 kb on + strand, within OHPLBJKB_00495at 512.615 kb on - strand, within OHPLBJKB_00495at 512.615 kb on - strand, within OHPLBJKB_00495at 512.615 kb on - strand, within OHPLBJKB_00495at 512.644 kb on - strand, within OHPLBJKB_00495at 512.682 kb on + strand, within OHPLBJKB_00495at 512.682 kb on + strand, within OHPLBJKB_00495at 512.685 kb on + strand, within OHPLBJKB_00495at 512.685 kb on + strand, within OHPLBJKB_00495at 512.685 kb on + strand, within OHPLBJKB_00495at 512.686 kb on - strand, within OHPLBJKB_00495at 512.781 kb on - strandat 512.781 kb on - strandat 512.855 kb on - strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.861 kb on + strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.862 kb on - strandat 512.903 kb on - strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.906 kb on + strandat 512.907 kb on - strandat 512.907 kb on - strandat 512.907 kb on - strandat 512.907 kb on - strandat 512.923 kb on - strandat 512.948 kb on + strandat 512.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T5 MOI1
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510,763 + OHPLBJKB_00492 0.82 -0.9
510,763 + OHPLBJKB_00492 0.82 +0.8
510,763 + OHPLBJKB_00492 0.82 +0.4
510,763 + OHPLBJKB_00492 0.82 +0.0
510,763 + OHPLBJKB_00492 0.82 -0.6
510,763 + OHPLBJKB_00492 0.82 +1.0
510,763 + OHPLBJKB_00492 0.82 +0.5
510,764 - OHPLBJKB_00492 0.82 +0.0
510,764 - OHPLBJKB_00492 0.82 +1.1
510,766 + OHPLBJKB_00492 0.82 -1.5
510,766 + OHPLBJKB_00492 0.82 -0.4
510,767 - OHPLBJKB_00492 0.83 +0.4
510,767 - OHPLBJKB_00492 0.83 -0.1
510,771 - OHPLBJKB_00492 0.83 -0.3
510,816 - OHPLBJKB_00492 0.89 -0.8
510,846 + +0.1
510,847 - -0.1
510,847 - -1.2
510,854 - -0.3
510,869 + +0.1
511,118 - OHPLBJKB_00493 0.36 -0.2
511,165 - OHPLBJKB_00493 0.43 -0.3
511,185 - OHPLBJKB_00493 0.47 +1.6
511,247 - OHPLBJKB_00493 0.56 -0.7
511,284 + OHPLBJKB_00493 0.62 +1.0
511,285 - OHPLBJKB_00493 0.62 -0.1
511,291 - OHPLBJKB_00493 0.63 -0.1
511,291 - OHPLBJKB_00493 0.63 -0.9
511,375 - OHPLBJKB_00493 0.77 -0.2
511,377 + OHPLBJKB_00493 0.77 +0.1
511,382 + OHPLBJKB_00493 0.78 -2.5
511,382 + OHPLBJKB_00493 0.78 +0.1
511,382 + OHPLBJKB_00493 0.78 +0.0
511,382 + OHPLBJKB_00493 0.78 -0.1
511,383 - OHPLBJKB_00493 0.78 +0.1
511,383 - OHPLBJKB_00493 0.78 -2.1
511,425 + OHPLBJKB_00493 0.85 +0.1
511,538 + +0.0
511,538 + -0.1
511,559 - +0.3
511,569 - +0.0
511,573 + -0.6
511,584 + +0.3
511,717 + -0.2
511,717 + -0.4
511,717 + -0.9
511,717 + -0.7
511,717 + +0.1
511,717 + -1.6
511,717 + -0.6
511,718 - -0.0
511,718 - -0.2
511,718 - -0.8
511,718 - -0.3
511,718 - -1.0
511,718 - -2.2
511,737 + +0.3
511,737 + +0.1
511,738 - +1.2
511,759 + +0.1
511,760 - +0.8
511,897 + OHPLBJKB_00494 0.59 +0.2
511,901 + OHPLBJKB_00494 0.60 -0.0
511,901 + OHPLBJKB_00494 0.60 +0.6
511,902 - OHPLBJKB_00494 0.61 +0.3
511,932 - OHPLBJKB_00494 0.72 +0.6
511,932 - OHPLBJKB_00494 0.72 +1.3
511,932 - OHPLBJKB_00494 0.72 +0.5
512,014 - +0.1
512,028 + +0.3
512,028 + -0.3
512,069 + +0.3
512,069 + +0.1
512,069 + +0.7
512,069 + +0.8
512,093 + OHPLBJKB_00495 0.10 +1.1
512,093 + OHPLBJKB_00495 0.10 -0.6
512,093 + OHPLBJKB_00495 0.10 +1.1
512,093 + OHPLBJKB_00495 0.10 -1.0
512,093 + OHPLBJKB_00495 0.10 +0.4
512,093 + OHPLBJKB_00495 0.10 -1.2
512,093 + OHPLBJKB_00495 0.10 -0.7
512,093 + OHPLBJKB_00495 0.10 -0.7
512,093 + OHPLBJKB_00495 0.10 -0.0
512,094 - OHPLBJKB_00495 0.10 -1.9
512,094 - OHPLBJKB_00495 0.10 +2.1
512,094 - OHPLBJKB_00495 0.10 +0.3
512,094 - OHPLBJKB_00495 0.10 +0.1
512,094 - OHPLBJKB_00495 0.10 +0.4
512,094 - OHPLBJKB_00495 0.10 -1.3
512,118 + OHPLBJKB_00495 0.13 +0.6
512,141 + OHPLBJKB_00495 0.16 +0.1
512,145 + OHPLBJKB_00495 0.16 +1.0
512,145 + OHPLBJKB_00495 0.16 +0.3
512,166 + OHPLBJKB_00495 0.19 +0.8
512,166 + OHPLBJKB_00495 0.19 +1.1
512,166 + OHPLBJKB_00495 0.19 -0.8
512,166 + OHPLBJKB_00495 0.19 -0.2
512,166 + OHPLBJKB_00495 0.19 +0.0
512,166 + OHPLBJKB_00495 0.19 -1.7
512,167 - OHPLBJKB_00495 0.19 +0.6
512,167 - OHPLBJKB_00495 0.19 +0.3
512,167 - OHPLBJKB_00495 0.19 -0.6
512,167 - OHPLBJKB_00495 0.19 -0.3
512,171 - OHPLBJKB_00495 0.19 +0.7
512,171 - OHPLBJKB_00495 0.19 -1.4
512,176 + OHPLBJKB_00495 0.20 -0.9
512,177 - OHPLBJKB_00495 0.20 +0.6
512,186 + OHPLBJKB_00495 0.21 -0.2
512,186 + OHPLBJKB_00495 0.21 -0.6
512,187 - OHPLBJKB_00495 0.21 -0.0
512,206 - OHPLBJKB_00495 0.24 -0.8
512,215 + OHPLBJKB_00495 0.25 +1.3
512,216 - OHPLBJKB_00495 0.25 +0.3
512,253 + OHPLBJKB_00495 0.29 -1.0
512,324 + OHPLBJKB_00495 0.37 -0.1
512,324 + OHPLBJKB_00495 0.37 +1.9
512,324 + OHPLBJKB_00495 0.37 +0.8
512,325 - OHPLBJKB_00495 0.37 +1.1
512,573 + OHPLBJKB_00495 0.66 -0.4
512,584 + OHPLBJKB_00495 0.68 +0.9
512,585 - OHPLBJKB_00495 0.68 -0.2
512,585 - OHPLBJKB_00495 0.68 -0.7
512,589 + OHPLBJKB_00495 0.68 -1.4
512,590 - OHPLBJKB_00495 0.68 +0.5
512,590 - OHPLBJKB_00495 0.68 +1.1
512,590 - OHPLBJKB_00495 0.68 -1.0
512,614 + OHPLBJKB_00495 0.71 -0.1
512,614 + OHPLBJKB_00495 0.71 -0.9
512,614 + OHPLBJKB_00495 0.71 -0.6
512,614 + OHPLBJKB_00495 0.71 -0.8
512,614 + OHPLBJKB_00495 0.71 -0.2
512,615 - OHPLBJKB_00495 0.71 -1.1
512,615 - OHPLBJKB_00495 0.71 -0.2
512,615 - OHPLBJKB_00495 0.71 -0.4
512,644 - OHPLBJKB_00495 0.75 -1.4
512,682 + OHPLBJKB_00495 0.79 -0.2
512,682 + OHPLBJKB_00495 0.79 -1.0
512,685 + OHPLBJKB_00495 0.80 -0.3
512,685 + OHPLBJKB_00495 0.80 -1.2
512,685 + OHPLBJKB_00495 0.80 +0.9
512,686 - OHPLBJKB_00495 0.80 +0.2
512,781 - -0.6
512,781 - -0.9
512,855 - +0.6
512,861 + -1.0
512,861 + +0.1
512,861 + -1.7
512,861 + -0.2
512,861 + -2.0
512,862 - +0.6
512,862 - +0.4
512,862 - -0.8
512,862 - -0.0
512,862 - -0.7
512,862 - +1.9
512,862 - +0.5
512,903 - -0.2
512,906 + -1.9
512,906 + -0.6
512,906 + -0.8
512,906 + -0.4
512,906 + -0.3
512,906 + -1.3
512,907 - -0.2
512,907 - -1.2
512,907 - -0.4
512,907 - +0.6
512,923 - +0.5
512,948 + -0.7
512,948 + -1.2

Or see this region's nucleotide sequence