Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frsA and gpt are separated by 91 nucleotides gpt and pepD are separated by 260 nucleotides
HEPCGN_07795: frsA - esterase FrsA, at 301,354 to 302,598
frsA
HEPCGN_07800: gpt - xanthine phosphoribosyltransferase, at 302,690 to 303,148
gpt
HEPCGN_07805: pepD - cytosol nonspecific dipeptidase, at 303,409 to 304,866
pepD
Position (kb) 302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.748 kb on + strand, within frsA at 301.823 kb on - strand, within frsA at 301.840 kb on + strand, within frsA at 301.912 kb on - strand, within frsA at 301.917 kb on + strand, within frsA at 301.949 kb on + strand, within frsA at 301.958 kb on + strand, within frsA at 301.959 kb on - strand, within frsA at 301.967 kb on + strand, within frsA at 301.967 kb on + strand, within frsA at 301.967 kb on + strand, within frsA at 301.968 kb on - strand, within frsA at 302.006 kb on - strand, within frsA at 302.006 kb on - strand, within frsA at 302.006 kb on - strand, within frsA at 302.008 kb on + strand, within frsA at 302.079 kb on + strand, within frsA at 302.130 kb on - strand, within frsA at 302.303 kb on + strand, within frsA at 302.343 kb on - strand, within frsA at 302.345 kb on - strand, within frsA at 302.476 kb on - strand at 302.517 kb on + strand at 302.530 kb on + strand at 302.553 kb on + strand at 302.553 kb on + strand at 302.620 kb on + strand at 302.631 kb on - strand at 302.962 kb on - strand, within gpt at 302.962 kb on - strand, within gpt at 303.052 kb on + strand, within gpt at 303.098 kb on - strand, within gpt at 303.136 kb on - strand at 303.174 kb on - strand at 303.181 kb on - strand at 303.202 kb on + strand at 303.217 kb on + strand at 303.219 kb on + strand at 303.220 kb on - strand at 303.246 kb on - strand at 303.246 kb on - strand at 303.317 kb on + strand at 303.318 kb on - strand at 303.318 kb on - strand at 303.374 kb on + strand at 303.405 kb on + strand at 303.405 kb on + strand at 303.405 kb on + strand at 303.406 kb on - strand at 303.428 kb on + strand at 303.428 kb on + strand at 303.471 kb on + strand at 303.471 kb on + strand at 303.472 kb on - strand at 303.472 kb on - strand at 303.472 kb on - strand at 303.564 kb on - strand, within pepD at 303.564 kb on - strand, within pepD at 303.567 kb on + strand, within pepD at 303.568 kb on - strand, within pepD at 303.600 kb on + strand, within pepD at 303.600 kb on + strand, within pepD at 303.661 kb on - strand, within pepD at 303.684 kb on + strand, within pepD at 303.704 kb on - strand, within pepD at 303.706 kb on - strand, within pepD at 303.766 kb on - strand, within pepD at 303.937 kb on + strand, within pepD at 303.937 kb on + strand, within pepD at 303.938 kb on - strand, within pepD at 303.938 kb on - strand, within pepD at 303.983 kb on + strand, within pepD at 304.031 kb on + strand, within pepD at 304.032 kb on - strand, within pepD at 304.032 kb on - strand, within pepD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 301,748 + frsA HEPCGN_07795 0.32 -0.3 301,823 - frsA HEPCGN_07795 0.38 -0.4 301,840 + frsA HEPCGN_07795 0.39 +0.3 301,912 - frsA HEPCGN_07795 0.45 +0.8 301,917 + frsA HEPCGN_07795 0.45 +0.6 301,949 + frsA HEPCGN_07795 0.48 +0.3 301,958 + frsA HEPCGN_07795 0.49 -1.9 301,959 - frsA HEPCGN_07795 0.49 +0.9 301,967 + frsA HEPCGN_07795 0.49 -0.5 301,967 + frsA HEPCGN_07795 0.49 +0.1 301,967 + frsA HEPCGN_07795 0.49 -0.7 301,968 - frsA HEPCGN_07795 0.49 -0.0 302,006 - frsA HEPCGN_07795 0.52 -0.9 302,006 - frsA HEPCGN_07795 0.52 -1.0 302,006 - frsA HEPCGN_07795 0.52 -0.5 302,008 + frsA HEPCGN_07795 0.53 +0.2 302,079 + frsA HEPCGN_07795 0.58 +0.7 302,130 - frsA HEPCGN_07795 0.62 -0.2 302,303 + frsA HEPCGN_07795 0.76 +0.4 302,343 - frsA HEPCGN_07795 0.79 +0.3 302,345 - frsA HEPCGN_07795 0.80 +0.3 302,476 - -0.5 302,517 + -1.1 302,530 + -0.2 302,553 + -0.2 302,553 + -0.6 302,620 + -0.6 302,631 - +0.3 302,962 - gpt HEPCGN_07800 0.59 -2.8 302,962 - gpt HEPCGN_07800 0.59 -0.8 303,052 + gpt HEPCGN_07800 0.79 +1.2 303,098 - gpt HEPCGN_07800 0.89 -1.4 303,136 - +0.8 303,174 - -0.4 303,181 - -0.9 303,202 + +0.2 303,217 + -0.4 303,219 + -0.8 303,220 - -0.6 303,246 - +1.1 303,246 - +2.2 303,317 + -0.4 303,318 - -0.2 303,318 - +0.2 303,374 + -0.9 303,405 + +0.1 303,405 + -0.1 303,405 + -0.9 303,406 - -1.5 303,428 + -0.6 303,428 + -1.1 303,471 + +0.1 303,471 + -0.5 303,472 - -0.1 303,472 - +0.1 303,472 - -1.2 303,564 - pepD HEPCGN_07805 0.11 +0.2 303,564 - pepD HEPCGN_07805 0.11 -0.4 303,567 + pepD HEPCGN_07805 0.11 -0.4 303,568 - pepD HEPCGN_07805 0.11 -0.7 303,600 + pepD HEPCGN_07805 0.13 +0.2 303,600 + pepD HEPCGN_07805 0.13 +0.4 303,661 - pepD HEPCGN_07805 0.17 +0.5 303,684 + pepD HEPCGN_07805 0.19 +1.8 303,704 - pepD HEPCGN_07805 0.20 +0.5 303,706 - pepD HEPCGN_07805 0.20 -0.4 303,766 - pepD HEPCGN_07805 0.24 +1.2 303,937 + pepD HEPCGN_07805 0.36 -0.0 303,937 + pepD HEPCGN_07805 0.36 +0.6 303,938 - pepD HEPCGN_07805 0.36 -0.2 303,938 - pepD HEPCGN_07805 0.36 +0.6 303,983 + pepD HEPCGN_07805 0.39 +0.3 304,031 + pepD HEPCGN_07805 0.43 -0.4 304,032 - pepD HEPCGN_07805 0.43 +0.2 304,032 - pepD HEPCGN_07805 0.43 -0.4
Or see this region's nucleotide sequence