Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt selO and ydiE are separated by 3 nucleotides ydiE and aroH are separated by 131 nucleotides aroH and ppsR are separated by 156 nucleotides
HEPCGN_05490: selO - protein adenylyltransferase SelO, at 969,930 to 971,366
selO
HEPCGN_05495: ydiE - Uncharacterized protein YdiE, at 971,370 to 971,561
ydiE
HEPCGN_05500: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 971,693 to 972,739
aroH
HEPCGN_05505: ppsR - posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR, at 972,896 to 973,729
ppsR
Position (kb) 971
972
973 Strain fitness (log2 ratio) -1
0
1
2 at 970.772 kb on + strand, within selO at 970.773 kb on - strand, within selO at 970.850 kb on - strand, within selO at 970.850 kb on - strand, within selO at 970.878 kb on + strand, within selO at 970.878 kb on + strand, within selO at 970.879 kb on - strand, within selO at 970.879 kb on - strand, within selO at 971.010 kb on - strand, within selO at 971.247 kb on - strand at 971.310 kb on + strand at 971.311 kb on - strand at 971.311 kb on - strand at 971.364 kb on + strand at 971.365 kb on - strand at 971.371 kb on + strand at 971.552 kb on + strand at 971.552 kb on + strand at 971.553 kb on - strand at 971.553 kb on - strand at 971.583 kb on + strand at 971.596 kb on + strand at 971.631 kb on - strand at 971.845 kb on + strand, within aroH at 971.890 kb on + strand, within aroH at 971.970 kb on - strand, within aroH at 972.047 kb on - strand, within aroH at 972.050 kb on - strand, within aroH at 972.050 kb on - strand, within aroH at 972.081 kb on + strand, within aroH at 972.081 kb on + strand, within aroH at 972.081 kb on + strand, within aroH at 972.082 kb on - strand, within aroH at 972.082 kb on - strand, within aroH at 972.082 kb on - strand, within aroH at 972.082 kb on - strand, within aroH at 972.121 kb on + strand, within aroH at 972.121 kb on + strand, within aroH at 972.121 kb on + strand, within aroH at 972.122 kb on - strand, within aroH at 972.247 kb on + strand, within aroH at 972.386 kb on + strand, within aroH at 972.397 kb on + strand, within aroH at 972.528 kb on + strand, within aroH at 972.590 kb on - strand, within aroH at 972.606 kb on - strand, within aroH at 972.925 kb on + strand at 972.968 kb on - strand at 972.999 kb on + strand, within ppsR at 973.000 kb on - strand, within ppsR at 973.051 kb on - strand, within ppsR at 973.162 kb on + strand, within ppsR at 973.224 kb on + strand, within ppsR at 973.224 kb on + strand, within ppsR at 973.354 kb on - strand, within ppsR at 973.367 kb on - strand, within ppsR at 973.370 kb on - strand, within ppsR at 973.518 kb on + strand, within ppsR at 973.552 kb on - strand, within ppsR at 973.616 kb on - strand, within ppsR at 973.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 970,772 + selO HEPCGN_05490 0.59 -1.0 970,773 - selO HEPCGN_05490 0.59 -0.3 970,850 - selO HEPCGN_05490 0.64 +0.3 970,850 - selO HEPCGN_05490 0.64 +1.7 970,878 + selO HEPCGN_05490 0.66 -0.4 970,878 + selO HEPCGN_05490 0.66 +0.8 970,879 - selO HEPCGN_05490 0.66 -1.1 970,879 - selO HEPCGN_05490 0.66 +1.3 971,010 - selO HEPCGN_05490 0.75 +2.7 971,247 - +1.0 971,310 + -0.6 971,311 - +0.3 971,311 - -1.1 971,364 + +0.8 971,365 - +1.2 971,371 + -0.2 971,552 + +0.1 971,552 + -0.6 971,553 - +0.8 971,553 - +0.1 971,583 + +0.5 971,596 + +2.7 971,631 - +0.7 971,845 + aroH HEPCGN_05500 0.15 +0.0 971,890 + aroH HEPCGN_05500 0.19 +0.3 971,970 - aroH HEPCGN_05500 0.26 +0.9 972,047 - aroH HEPCGN_05500 0.34 -1.2 972,050 - aroH HEPCGN_05500 0.34 -0.1 972,050 - aroH HEPCGN_05500 0.34 +0.3 972,081 + aroH HEPCGN_05500 0.37 -1.0 972,081 + aroH HEPCGN_05500 0.37 +0.4 972,081 + aroH HEPCGN_05500 0.37 -1.0 972,082 - aroH HEPCGN_05500 0.37 -1.6 972,082 - aroH HEPCGN_05500 0.37 +0.1 972,082 - aroH HEPCGN_05500 0.37 -0.6 972,082 - aroH HEPCGN_05500 0.37 -1.3 972,121 + aroH HEPCGN_05500 0.41 +0.1 972,121 + aroH HEPCGN_05500 0.41 -0.7 972,121 + aroH HEPCGN_05500 0.41 +0.1 972,122 - aroH HEPCGN_05500 0.41 +0.7 972,247 + aroH HEPCGN_05500 0.53 -0.3 972,386 + aroH HEPCGN_05500 0.66 -0.4 972,397 + aroH HEPCGN_05500 0.67 -0.2 972,528 + aroH HEPCGN_05500 0.80 +0.6 972,590 - aroH HEPCGN_05500 0.86 -0.1 972,606 - aroH HEPCGN_05500 0.87 -0.3 972,925 + -0.2 972,968 - -0.0 972,999 + ppsR HEPCGN_05505 0.12 -0.3 973,000 - ppsR HEPCGN_05505 0.12 -0.0 973,051 - ppsR HEPCGN_05505 0.19 -0.0 973,162 + ppsR HEPCGN_05505 0.32 +0.9 973,224 + ppsR HEPCGN_05505 0.39 -0.6 973,224 + ppsR HEPCGN_05505 0.39 +0.9 973,354 - ppsR HEPCGN_05505 0.55 +0.0 973,367 - ppsR HEPCGN_05505 0.56 -0.8 973,370 - ppsR HEPCGN_05505 0.57 +0.2 973,518 + ppsR HEPCGN_05505 0.75 -0.6 973,552 - ppsR HEPCGN_05505 0.79 +0.2 973,616 - ppsR HEPCGN_05505 0.86 +0.0 973,696 + +1.7
Or see this region's nucleotide sequence