Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04205 and HEPCGN_04210 are separated by 191 nucleotides HEPCGN_04210 and HEPCGN_04215 are separated by 42 nucleotides
HEPCGN_04205: HEPCGN_04205 - hok/gef family protein, at 737,386 to 737,526
_04205
HEPCGN_04210: HEPCGN_04210 - Ogr/Delta-like zinc finger, at 737,718 to 737,978
_04210
HEPCGN_04215: HEPCGN_04215 - late control protein, at 738,021 to 739,130
_04215
Position (kb) 737
738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.508 kb on + strand at 736.596 kb on - strand at 736.724 kb on + strand at 736.777 kb on + strand at 736.791 kb on - strand at 736.820 kb on + strand at 736.820 kb on + strand at 736.821 kb on - strand at 736.821 kb on - strand at 736.857 kb on - strand at 736.857 kb on - strand at 736.896 kb on + strand at 736.899 kb on + strand at 737.013 kb on + strand at 737.018 kb on - strand at 737.060 kb on + strand at 737.062 kb on + strand at 737.083 kb on + strand at 737.084 kb on - strand at 737.084 kb on - strand at 737.084 kb on - strand at 737.084 kb on - strand at 737.105 kb on + strand at 737.106 kb on - strand at 737.106 kb on - strand at 737.106 kb on - strand at 737.107 kb on + strand at 737.133 kb on + strand at 737.133 kb on + strand at 737.133 kb on + strand at 737.134 kb on - strand at 737.229 kb on - strand at 737.244 kb on + strand at 737.249 kb on + strand at 737.250 kb on - strand at 737.250 kb on - strand at 737.259 kb on + strand at 737.344 kb on - strand at 737.401 kb on + strand, within HEPCGN_04205 at 737.402 kb on - strand, within HEPCGN_04205 at 737.402 kb on - strand, within HEPCGN_04205 at 737.461 kb on + strand, within HEPCGN_04205 at 737.461 kb on + strand, within HEPCGN_04205 at 737.509 kb on - strand, within HEPCGN_04205 at 737.561 kb on - strand at 737.581 kb on - strand at 737.581 kb on - strand at 737.680 kb on - strand at 737.720 kb on - strand at 737.789 kb on + strand, within HEPCGN_04210 at 737.882 kb on + strand, within HEPCGN_04210 at 737.883 kb on - strand, within HEPCGN_04210 at 738.147 kb on - strand, within HEPCGN_04215 at 738.235 kb on - strand, within HEPCGN_04215 at 738.329 kb on + strand, within HEPCGN_04215 at 738.329 kb on + strand, within HEPCGN_04215 at 738.330 kb on - strand, within HEPCGN_04215 at 738.331 kb on + strand, within HEPCGN_04215 at 738.332 kb on - strand, within HEPCGN_04215 at 738.415 kb on + strand, within HEPCGN_04215 at 738.419 kb on + strand, within HEPCGN_04215 at 738.451 kb on + strand, within HEPCGN_04215
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 736,508 + -0.5 736,596 - -0.4 736,724 + -0.6 736,777 + -0.3 736,791 - -0.5 736,820 + +0.6 736,820 + +0.5 736,821 - -0.1 736,821 - -0.5 736,857 - +0.0 736,857 - -0.2 736,896 + -0.1 736,899 + +1.1 737,013 + +0.5 737,018 - +0.8 737,060 + +0.6 737,062 + +0.3 737,083 + -0.4 737,084 - +0.5 737,084 - +0.5 737,084 - +0.8 737,084 - -0.2 737,105 + -0.3 737,106 - +0.7 737,106 - +0.3 737,106 - +1.2 737,107 + -0.2 737,133 + -0.0 737,133 + +1.8 737,133 + -1.3 737,134 - +0.6 737,229 - +0.5 737,244 + -0.2 737,249 + +0.8 737,250 - -2.4 737,250 - -0.4 737,259 + -0.4 737,344 - +0.1 737,401 + HEPCGN_04205 0.11 +1.2 737,402 - HEPCGN_04205 0.11 -0.7 737,402 - HEPCGN_04205 0.11 -0.9 737,461 + HEPCGN_04205 0.53 -0.4 737,461 + HEPCGN_04205 0.53 +0.5 737,509 - HEPCGN_04205 0.87 -0.1 737,561 - +0.3 737,581 - -1.8 737,581 - -0.1 737,680 - -0.3 737,720 - +1.1 737,789 + HEPCGN_04210 0.27 -0.1 737,882 + HEPCGN_04210 0.63 +0.1 737,883 - HEPCGN_04210 0.63 +0.4 738,147 - HEPCGN_04215 0.11 +0.7 738,235 - HEPCGN_04215 0.19 -1.4 738,329 + HEPCGN_04215 0.28 +0.6 738,329 + HEPCGN_04215 0.28 -1.4 738,330 - HEPCGN_04215 0.28 -1.4 738,331 + HEPCGN_04215 0.28 -0.9 738,332 - HEPCGN_04215 0.28 -0.1 738,415 + HEPCGN_04215 0.35 -0.4 738,419 + HEPCGN_04215 0.36 -0.9 738,451 + HEPCGN_04215 0.39 -1.3
Or see this region's nucleotide sequence