Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt opgE and mntS are separated by 271 nucleotides mntS and mntR are separated by 185 nucleotides mntR and ybiR overlap by 4 nucleotides
HEPCGN_01855: opgE - phosphoethanolamine transferase, at 294,543 to 296,126
opgE
HEPCGN_01860: mntS - manganase accumulation protein MntS, at 296,398 to 296,526
mntS
HEPCGN_01865: mntR - manganese-binding transcriptional regulator MntR, at 296,712 to 297,179
mntR
HEPCGN_01870: ybiR - Inner membrane protein YbiR, at 297,176 to 298,294
ybiR
Position (kb) 296
297 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 295.471 kb on + strand, within opgE at 295.471 kb on + strand, within opgE at 295.472 kb on - strand, within opgE at 295.472 kb on - strand, within opgE at 295.481 kb on - strand, within opgE at 295.512 kb on - strand, within opgE at 295.587 kb on - strand, within opgE at 295.587 kb on - strand, within opgE at 295.613 kb on + strand, within opgE at 295.773 kb on - strand, within opgE at 295.790 kb on - strand, within opgE at 295.790 kb on - strand, within opgE at 295.790 kb on - strand, within opgE at 295.862 kb on + strand, within opgE at 296.002 kb on + strand at 296.002 kb on + strand at 296.026 kb on - strand at 296.036 kb on + strand at 296.041 kb on - strand at 296.044 kb on - strand at 296.126 kb on + strand at 296.139 kb on + strand at 296.179 kb on - strand at 296.233 kb on + strand at 296.233 kb on + strand at 296.234 kb on - strand at 296.400 kb on - strand at 296.415 kb on + strand, within mntS at 296.455 kb on - strand, within mntS at 296.455 kb on - strand, within mntS at 296.455 kb on - strand, within mntS at 296.455 kb on - strand, within mntS at 296.506 kb on - strand, within mntS at 296.544 kb on + strand at 296.545 kb on - strand at 296.576 kb on + strand at 296.576 kb on + strand at 296.581 kb on - strand at 296.581 kb on - strand at 296.586 kb on + strand at 296.586 kb on + strand at 296.598 kb on + strand at 296.598 kb on + strand at 296.599 kb on - strand at 296.600 kb on + strand at 296.603 kb on + strand at 296.605 kb on + strand at 296.607 kb on + strand at 296.608 kb on - strand at 296.611 kb on + strand at 296.611 kb on + strand at 296.612 kb on - strand at 296.612 kb on - strand at 296.654 kb on + strand at 296.654 kb on + strand at 296.682 kb on - strand at 296.682 kb on - strand at 296.682 kb on - strand at 296.685 kb on + strand at 296.686 kb on - strand at 296.686 kb on - strand at 296.697 kb on + strand at 296.698 kb on - strand at 296.730 kb on - strand at 296.822 kb on + strand, within mntR at 296.822 kb on + strand, within mntR at 296.832 kb on + strand, within mntR at 296.833 kb on - strand, within mntR at 296.833 kb on - strand, within mntR at 297.043 kb on + strand, within mntR at 297.228 kb on + strand at 297.228 kb on + strand at 297.228 kb on + strand at 297.319 kb on - strand, within ybiR at 297.354 kb on + strand, within ybiR at 297.502 kb on + strand, within ybiR
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 295,471 + opgE HEPCGN_01855 0.59 -0.9 295,471 + opgE HEPCGN_01855 0.59 -0.6 295,472 - opgE HEPCGN_01855 0.59 -0.0 295,472 - opgE HEPCGN_01855 0.59 +0.4 295,481 - opgE HEPCGN_01855 0.59 +0.3 295,512 - opgE HEPCGN_01855 0.61 -1.0 295,587 - opgE HEPCGN_01855 0.66 -0.0 295,587 - opgE HEPCGN_01855 0.66 +0.1 295,613 + opgE HEPCGN_01855 0.68 +0.5 295,773 - opgE HEPCGN_01855 0.78 +0.4 295,790 - opgE HEPCGN_01855 0.79 +0.4 295,790 - opgE HEPCGN_01855 0.79 -1.6 295,790 - opgE HEPCGN_01855 0.79 +0.2 295,862 + opgE HEPCGN_01855 0.83 +0.1 296,002 + -1.3 296,002 + +0.4 296,026 - +0.7 296,036 + +1.6 296,041 - -1.5 296,044 - +0.6 296,126 + +0.9 296,139 + -0.6 296,179 - +0.8 296,233 + -0.3 296,233 + -0.9 296,234 - -2.0 296,400 - +0.4 296,415 + mntS HEPCGN_01860 0.13 +0.4 296,455 - mntS HEPCGN_01860 0.44 +0.7 296,455 - mntS HEPCGN_01860 0.44 -0.0 296,455 - mntS HEPCGN_01860 0.44 +0.8 296,455 - mntS HEPCGN_01860 0.44 -0.0 296,506 - mntS HEPCGN_01860 0.84 -0.3 296,544 + +0.4 296,545 - +0.6 296,576 + -0.5 296,576 + +1.0 296,581 - +0.2 296,581 - -1.0 296,586 + -0.7 296,586 + -0.2 296,598 + -0.3 296,598 + -0.5 296,599 - -0.1 296,600 + +2.3 296,603 + -0.7 296,605 + -0.7 296,607 + -0.4 296,608 - +0.2 296,611 + +0.8 296,611 + +0.5 296,612 - -0.3 296,612 - -0.2 296,654 + -1.4 296,654 + -0.9 296,682 - -0.7 296,682 - -0.5 296,682 - +2.0 296,685 + +0.8 296,686 - -0.3 296,686 - +3.0 296,697 + +0.8 296,698 - -0.0 296,730 - +0.7 296,822 + mntR HEPCGN_01865 0.24 +0.5 296,822 + mntR HEPCGN_01865 0.24 -0.6 296,832 + mntR HEPCGN_01865 0.26 -0.1 296,833 - mntR HEPCGN_01865 0.26 +0.7 296,833 - mntR HEPCGN_01865 0.26 +0.6 297,043 + mntR HEPCGN_01865 0.71 +0.2 297,228 + +0.2 297,228 + -0.2 297,228 + -1.0 297,319 - ybiR HEPCGN_01870 0.13 +0.1 297,354 + ybiR HEPCGN_01870 0.16 +0.5 297,502 + ybiR HEPCGN_01870 0.29 -0.6
Or see this region's nucleotide sequence