Experiment: Bas55
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_01230 and HEPCGN_01235 are separated by 263 nucleotides HEPCGN_01235 and HEPCGN_01240 are separated by 12 nucleotides
HEPCGN_01230: HEPCGN_01230 - FadR family transcriptional regulator, at 172,851 to 173,564
_01230
HEPCGN_01235: HEPCGN_01235 - dimethylmenaquinone methyltransferase, at 173,828 to 174,514
_01235
HEPCGN_01240: HEPCGN_01240 - alcohol dehydrogenase, at 174,527 to 175,540
_01240
Position (kb) 173
174
175 Strain fitness (log2 ratio) -1
0
1
2
3 at 172.849 kb on + strand at 172.850 kb on - strand at 173.050 kb on - strand, within HEPCGN_01230 at 173.050 kb on - strand, within HEPCGN_01230 at 173.062 kb on - strand, within HEPCGN_01230 at 173.070 kb on - strand, within HEPCGN_01230 at 173.130 kb on - strand, within HEPCGN_01230 at 173.130 kb on - strand, within HEPCGN_01230 at 173.241 kb on + strand, within HEPCGN_01230 at 173.254 kb on - strand, within HEPCGN_01230 at 173.254 kb on - strand, within HEPCGN_01230 at 173.277 kb on + strand, within HEPCGN_01230 at 173.415 kb on - strand, within HEPCGN_01230 at 173.507 kb on + strand at 173.663 kb on - strand at 173.704 kb on + strand at 173.704 kb on + strand at 173.879 kb on - strand at 173.915 kb on + strand, within HEPCGN_01235 at 173.917 kb on + strand, within HEPCGN_01235 at 173.918 kb on - strand, within HEPCGN_01235 at 173.962 kb on + strand, within HEPCGN_01235 at 173.962 kb on + strand, within HEPCGN_01235 at 174.105 kb on - strand, within HEPCGN_01235 at 174.132 kb on - strand, within HEPCGN_01235 at 174.263 kb on + strand, within HEPCGN_01235 at 174.263 kb on + strand, within HEPCGN_01235 at 174.263 kb on + strand, within HEPCGN_01235 at 174.313 kb on + strand, within HEPCGN_01235 at 174.382 kb on + strand, within HEPCGN_01235 at 174.507 kb on + strand at 174.652 kb on + strand, within HEPCGN_01240 at 174.652 kb on + strand, within HEPCGN_01240 at 174.835 kb on + strand, within HEPCGN_01240 at 174.905 kb on - strand, within HEPCGN_01240 at 174.972 kb on + strand, within HEPCGN_01240 at 174.972 kb on + strand, within HEPCGN_01240 at 174.997 kb on + strand, within HEPCGN_01240 at 175.083 kb on + strand, within HEPCGN_01240 at 175.192 kb on - strand, within HEPCGN_01240 at 175.292 kb on + strand, within HEPCGN_01240
Per-strain Table
Position Strand Gene LocusTag Fraction Bas55 remove 172,849 + +0.9 172,850 - -1.0 173,050 - HEPCGN_01230 0.28 -1.0 173,050 - HEPCGN_01230 0.28 -0.2 173,062 - HEPCGN_01230 0.30 -0.6 173,070 - HEPCGN_01230 0.31 +1.8 173,130 - HEPCGN_01230 0.39 -1.6 173,130 - HEPCGN_01230 0.39 -0.0 173,241 + HEPCGN_01230 0.55 -0.2 173,254 - HEPCGN_01230 0.56 +0.7 173,254 - HEPCGN_01230 0.56 -0.6 173,277 + HEPCGN_01230 0.60 +0.9 173,415 - HEPCGN_01230 0.79 -1.3 173,507 + +3.0 173,663 - +0.7 173,704 + -0.2 173,704 + +0.1 173,879 - +0.2 173,915 + HEPCGN_01235 0.13 +0.2 173,917 + HEPCGN_01235 0.13 -1.4 173,918 - HEPCGN_01235 0.13 +0.1 173,962 + HEPCGN_01235 0.20 -0.2 173,962 + HEPCGN_01235 0.20 -1.3 174,105 - HEPCGN_01235 0.40 +0.7 174,132 - HEPCGN_01235 0.44 -1.0 174,263 + HEPCGN_01235 0.63 -0.1 174,263 + HEPCGN_01235 0.63 +0.2 174,263 + HEPCGN_01235 0.63 -1.7 174,313 + HEPCGN_01235 0.71 -0.4 174,382 + HEPCGN_01235 0.81 +0.5 174,507 + +0.2 174,652 + HEPCGN_01240 0.12 -0.3 174,652 + HEPCGN_01240 0.12 -0.5 174,835 + HEPCGN_01240 0.30 +1.0 174,905 - HEPCGN_01240 0.37 +0.6 174,972 + HEPCGN_01240 0.44 -1.2 174,972 + HEPCGN_01240 0.44 -0.3 174,997 + HEPCGN_01240 0.46 +1.1 175,083 + HEPCGN_01240 0.55 +0.8 175,192 - HEPCGN_01240 0.66 +0.0 175,292 + HEPCGN_01240 0.75 -0.4
Or see this region's nucleotide sequence