Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00455

Experiment: Bas55

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00440 and fII are separated by 11 nucleotidesfII and HEPCGN_00450 are separated by 11 nucleotidesHEPCGN_00450 and HEPCGN_00455 overlap by 4 nucleotidesHEPCGN_00455 and yjdB are separated by 7 nucleotidesyjdB and HEPCGN_00465 are separated by 15 nucleotides HEPCGN_00440: HEPCGN_00440 - DNA-packaging protein FI, at 12,203 to 12,601 _00440 HEPCGN_00445: fII - Head-tail connector protein FII, at 12,613 to 12,966 fII HEPCGN_00450: HEPCGN_00450 - Tail completion protein Z, at 12,978 to 13,556 _00450 HEPCGN_00455: HEPCGN_00455 - phage tail protein, at 13,553 to 13,948 _00455 HEPCGN_00460: yjdB - phage tail protein, at 13,956 to 14,696 yjdB HEPCGN_00465: HEPCGN_00465 - phage minor tail protein G, at 14,712 to 15,134 _00465 Position (kb) 13 14Strain fitness (log2 ratio) -1 0 1at 12.729 kb on - strand, within fIIat 14.034 kb on + strand, within yjdB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas55
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12,729 - fII HEPCGN_00445 0.33 -0.2
14,034 + yjdB HEPCGN_00460 0.11 -0.4

Or see this region's nucleotide sequence