Experiment: beta-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01055 and ABI39_RS01060 are separated by 4 nucleotides ABI39_RS01060 and ABI39_RS01065 are separated by 73 nucleotides
ABI39_RS01055: ABI39_RS01055 - ABC transporter permease, at 339,147 to 340,403
_RS01055
ABI39_RS01060: ABI39_RS01060 - ABC transporter permease, at 340,408 to 341,649
_RS01060
ABI39_RS01065: ABI39_RS01065 - efflux RND transporter periplasmic adaptor subunit, at 341,723 to 342,817
_RS01065
Position (kb) 340
341
342 Strain fitness (log2 ratio) -1
0
1 at 339.484 kb on - strand, within ABI39_RS01055 at 339.495 kb on + strand, within ABI39_RS01055 at 339.496 kb on - strand, within ABI39_RS01055 at 339.520 kb on + strand, within ABI39_RS01055 at 339.520 kb on + strand, within ABI39_RS01055 at 339.521 kb on - strand, within ABI39_RS01055 at 339.694 kb on + strand, within ABI39_RS01055 at 339.697 kb on + strand, within ABI39_RS01055 at 339.697 kb on + strand, within ABI39_RS01055 at 339.699 kb on + strand, within ABI39_RS01055 at 339.706 kb on + strand, within ABI39_RS01055 at 339.716 kb on - strand, within ABI39_RS01055 at 339.769 kb on + strand, within ABI39_RS01055 at 339.781 kb on - strand, within ABI39_RS01055 at 339.815 kb on + strand, within ABI39_RS01055 at 339.816 kb on - strand, within ABI39_RS01055 at 339.886 kb on + strand, within ABI39_RS01055 at 339.886 kb on + strand, within ABI39_RS01055 at 339.887 kb on - strand, within ABI39_RS01055 at 340.001 kb on - strand, within ABI39_RS01055 at 340.037 kb on - strand, within ABI39_RS01055 at 340.044 kb on - strand, within ABI39_RS01055 at 340.113 kb on - strand, within ABI39_RS01055 at 340.118 kb on + strand, within ABI39_RS01055 at 340.129 kb on + strand, within ABI39_RS01055 at 340.155 kb on - strand, within ABI39_RS01055 at 340.170 kb on + strand, within ABI39_RS01055 at 340.174 kb on + strand, within ABI39_RS01055 at 340.175 kb on - strand, within ABI39_RS01055 at 340.294 kb on + strand at 340.300 kb on + strand at 340.300 kb on + strand at 340.551 kb on + strand, within ABI39_RS01060 at 340.896 kb on - strand, within ABI39_RS01060 at 340.940 kb on - strand, within ABI39_RS01060 at 340.957 kb on - strand, within ABI39_RS01060 at 340.957 kb on - strand, within ABI39_RS01060 at 340.960 kb on + strand, within ABI39_RS01060 at 341.094 kb on + strand, within ABI39_RS01060 at 341.095 kb on - strand, within ABI39_RS01060 at 341.102 kb on + strand, within ABI39_RS01060 at 341.129 kb on + strand, within ABI39_RS01060 at 341.141 kb on + strand, within ABI39_RS01060 at 341.167 kb on + strand, within ABI39_RS01060 at 341.317 kb on - strand, within ABI39_RS01060 at 341.317 kb on - strand, within ABI39_RS01060 at 341.319 kb on + strand, within ABI39_RS01060 at 341.489 kb on + strand, within ABI39_RS01060 at 341.574 kb on - strand at 341.578 kb on - strand at 341.636 kb on + strand at 341.636 kb on + strand at 341.647 kb on + strand at 341.875 kb on + strand, within ABI39_RS01065 at 341.944 kb on - strand, within ABI39_RS01065 at 341.946 kb on - strand, within ABI39_RS01065 at 341.946 kb on - strand, within ABI39_RS01065 at 341.947 kb on + strand, within ABI39_RS01065 at 342.223 kb on + strand, within ABI39_RS01065 at 342.248 kb on - strand, within ABI39_RS01065 at 342.262 kb on + strand, within ABI39_RS01065 at 342.283 kb on - strand, within ABI39_RS01065 at 342.483 kb on + strand, within ABI39_RS01065 at 342.493 kb on - strand, within ABI39_RS01065 at 342.565 kb on + strand, within ABI39_RS01065 at 342.628 kb on - strand, within ABI39_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin (C) remove 339,484 - ABI39_RS01055 0.27 -0.0 339,495 + ABI39_RS01055 0.28 -0.5 339,496 - ABI39_RS01055 0.28 -0.7 339,520 + ABI39_RS01055 0.30 +0.0 339,520 + ABI39_RS01055 0.30 -0.4 339,521 - ABI39_RS01055 0.30 +0.1 339,694 + ABI39_RS01055 0.44 -0.3 339,697 + ABI39_RS01055 0.44 -0.1 339,697 + ABI39_RS01055 0.44 -0.2 339,699 + ABI39_RS01055 0.44 -0.1 339,706 + ABI39_RS01055 0.44 -0.3 339,716 - ABI39_RS01055 0.45 +0.3 339,769 + ABI39_RS01055 0.49 +0.1 339,781 - ABI39_RS01055 0.50 -0.3 339,815 + ABI39_RS01055 0.53 +0.2 339,816 - ABI39_RS01055 0.53 +0.1 339,886 + ABI39_RS01055 0.59 -0.4 339,886 + ABI39_RS01055 0.59 -0.2 339,887 - ABI39_RS01055 0.59 -0.0 340,001 - ABI39_RS01055 0.68 -0.3 340,037 - ABI39_RS01055 0.71 +0.5 340,044 - ABI39_RS01055 0.71 -0.6 340,113 - ABI39_RS01055 0.77 -0.2 340,118 + ABI39_RS01055 0.77 +1.0 340,129 + ABI39_RS01055 0.78 -0.5 340,155 - ABI39_RS01055 0.80 +0.2 340,170 + ABI39_RS01055 0.81 -0.4 340,174 + ABI39_RS01055 0.82 +0.2 340,175 - ABI39_RS01055 0.82 -0.4 340,294 + -0.6 340,300 + -0.7 340,300 + -0.2 340,551 + ABI39_RS01060 0.12 +0.3 340,896 - ABI39_RS01060 0.39 -0.4 340,940 - ABI39_RS01060 0.43 -0.6 340,957 - ABI39_RS01060 0.44 +1.3 340,957 - ABI39_RS01060 0.44 -0.0 340,960 + ABI39_RS01060 0.44 -0.0 341,094 + ABI39_RS01060 0.55 -0.1 341,095 - ABI39_RS01060 0.55 +0.3 341,102 + ABI39_RS01060 0.56 -0.2 341,129 + ABI39_RS01060 0.58 -0.5 341,141 + ABI39_RS01060 0.59 -0.2 341,167 + ABI39_RS01060 0.61 +0.5 341,317 - ABI39_RS01060 0.73 -0.4 341,317 - ABI39_RS01060 0.73 +0.4 341,319 + ABI39_RS01060 0.73 +0.1 341,489 + ABI39_RS01060 0.87 +0.2 341,574 - -0.4 341,578 - -0.3 341,636 + +0.1 341,636 + +0.2 341,647 + -0.7 341,875 + ABI39_RS01065 0.14 +0.6 341,944 - ABI39_RS01065 0.20 -0.1 341,946 - ABI39_RS01065 0.20 +0.2 341,946 - ABI39_RS01065 0.20 +0.5 341,947 + ABI39_RS01065 0.20 +0.3 342,223 + ABI39_RS01065 0.46 -0.4 342,248 - ABI39_RS01065 0.48 +0.2 342,262 + ABI39_RS01065 0.49 +1.2 342,283 - ABI39_RS01065 0.51 +0.7 342,483 + ABI39_RS01065 0.69 -0.5 342,493 - ABI39_RS01065 0.70 -0.6 342,565 + ABI39_RS01065 0.77 +0.1 342,628 - ABI39_RS01065 0.83 -0.3
Or see this region's nucleotide sequence