Experiment: beta-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00365 and ABI39_RS00370 are separated by 503 nucleotides ABI39_RS00370 and ABI39_RS00375 overlap by 18 nucleotides ABI39_RS00375 and ABI39_RS00380 are separated by 106 nucleotides
ABI39_RS00365: ABI39_RS00365 - helix-turn-helix domain-containing protein, at 99,447 to 101,204
_RS00365
ABI39_RS00370: ABI39_RS00370 - DUF108 domain-containing protein, at 101,708 to 102,496
_RS00370
ABI39_RS00375: ABI39_RS00375 - dihydrofolate reductase, at 102,479 to 103,363
_RS00375
ABI39_RS00380: ABI39_RS00380 - TerB family tellurite resistance protein, at 103,470 to 104,252
_RS00380
Position (kb) 101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 100.744 kb on + strand, within ABI39_RS00365 at 100.874 kb on + strand, within ABI39_RS00365 at 100.944 kb on - strand, within ABI39_RS00365 at 100.944 kb on - strand, within ABI39_RS00365 at 100.944 kb on - strand, within ABI39_RS00365 at 100.949 kb on + strand, within ABI39_RS00365 at 100.950 kb on - strand, within ABI39_RS00365 at 100.952 kb on - strand, within ABI39_RS00365 at 100.965 kb on - strand, within ABI39_RS00365 at 101.007 kb on - strand, within ABI39_RS00365 at 101.029 kb on - strand at 101.049 kb on + strand at 101.050 kb on - strand at 101.071 kb on - strand at 101.083 kb on - strand at 101.160 kb on - strand at 101.387 kb on - strand at 101.390 kb on + strand at 101.391 kb on - strand at 101.400 kb on + strand at 101.400 kb on + strand at 101.401 kb on - strand at 101.409 kb on + strand at 101.410 kb on - strand at 101.454 kb on - strand at 101.468 kb on + strand at 101.591 kb on + strand at 101.625 kb on - strand at 101.673 kb on + strand at 101.679 kb on + strand at 101.679 kb on + strand at 101.680 kb on - strand at 101.680 kb on - strand at 101.680 kb on - strand at 101.692 kb on + strand at 101.697 kb on - strand at 101.723 kb on - strand at 101.727 kb on + strand at 101.805 kb on + strand, within ABI39_RS00370 at 102.142 kb on + strand, within ABI39_RS00370 at 102.280 kb on - strand, within ABI39_RS00370 at 102.286 kb on - strand, within ABI39_RS00370 at 102.326 kb on - strand, within ABI39_RS00370 at 102.334 kb on - strand, within ABI39_RS00370 at 102.368 kb on - strand, within ABI39_RS00370 at 102.419 kb on + strand at 102.427 kb on + strand at 102.489 kb on + strand at 102.489 kb on + strand at 102.558 kb on - strand at 102.558 kb on - strand at 102.619 kb on + strand, within ABI39_RS00375 at 102.697 kb on + strand, within ABI39_RS00375 at 102.698 kb on - strand, within ABI39_RS00375 at 102.861 kb on + strand, within ABI39_RS00375 at 102.864 kb on + strand, within ABI39_RS00375 at 102.865 kb on - strand, within ABI39_RS00375 at 102.907 kb on + strand, within ABI39_RS00375 at 103.026 kb on + strand, within ABI39_RS00375 at 103.031 kb on + strand, within ABI39_RS00375 at 103.031 kb on + strand, within ABI39_RS00375 at 103.127 kb on + strand, within ABI39_RS00375 at 103.141 kb on + strand, within ABI39_RS00375 at 103.177 kb on + strand, within ABI39_RS00375 at 103.198 kb on + strand, within ABI39_RS00375 at 103.199 kb on - strand, within ABI39_RS00375 at 103.211 kb on + strand, within ABI39_RS00375 at 103.212 kb on - strand, within ABI39_RS00375 at 103.276 kb on + strand at 103.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin (C) remove 100,744 + ABI39_RS00365 0.74 +0.8 100,874 + ABI39_RS00365 0.81 +0.1 100,944 - ABI39_RS00365 0.85 -0.2 100,944 - ABI39_RS00365 0.85 +0.3 100,944 - ABI39_RS00365 0.85 -1.1 100,949 + ABI39_RS00365 0.85 +0.2 100,950 - ABI39_RS00365 0.85 -0.4 100,952 - ABI39_RS00365 0.86 -0.7 100,965 - ABI39_RS00365 0.86 -0.4 101,007 - ABI39_RS00365 0.89 +0.1 101,029 - -0.2 101,049 + -0.3 101,050 - -0.3 101,071 - +0.7 101,083 - +0.6 101,160 - +0.4 101,387 - -1.6 101,390 + -0.3 101,391 - -2.3 101,400 + -0.2 101,400 + +0.5 101,401 - -1.8 101,409 + +0.4 101,410 - -2.1 101,454 - -1.7 101,468 + -0.5 101,591 + +0.1 101,625 - -3.2 101,673 + -0.9 101,679 + -0.4 101,679 + +0.7 101,680 - -3.4 101,680 - -2.0 101,680 - -3.1 101,692 + +0.2 101,697 - -0.6 101,723 - -1.6 101,727 + -0.0 101,805 + ABI39_RS00370 0.12 +0.3 102,142 + ABI39_RS00370 0.55 +0.2 102,280 - ABI39_RS00370 0.72 +0.4 102,286 - ABI39_RS00370 0.73 +0.2 102,326 - ABI39_RS00370 0.78 +0.0 102,334 - ABI39_RS00370 0.79 +0.2 102,368 - ABI39_RS00370 0.84 -0.6 102,419 + +0.2 102,427 + +0.6 102,489 + -0.4 102,489 + +0.5 102,558 - +0.1 102,558 - -0.7 102,619 + ABI39_RS00375 0.16 -0.1 102,697 + ABI39_RS00375 0.25 -0.8 102,698 - ABI39_RS00375 0.25 -0.3 102,861 + ABI39_RS00375 0.43 +0.0 102,864 + ABI39_RS00375 0.44 +0.4 102,865 - ABI39_RS00375 0.44 +0.2 102,907 + ABI39_RS00375 0.48 -0.1 103,026 + ABI39_RS00375 0.62 +0.3 103,031 + ABI39_RS00375 0.62 +0.2 103,031 + ABI39_RS00375 0.62 -0.2 103,127 + ABI39_RS00375 0.73 +0.7 103,141 + ABI39_RS00375 0.75 +0.6 103,177 + ABI39_RS00375 0.79 +0.3 103,198 + ABI39_RS00375 0.81 +0.9 103,199 - ABI39_RS00375 0.81 -0.8 103,211 + ABI39_RS00375 0.83 +0.9 103,212 - ABI39_RS00375 0.83 +0.1 103,276 + -0.9 103,394 - -0.4
Or see this region's nucleotide sequence